Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Forward (+)

4268341 .. 4272184

Gene Structure 3844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGGCACAATCCCCCTTCGTCTTCGACCAAATCGACGCCATTGAGAAAGACCGCTCCGACAAGGACCAAACCCTCCAAAAGATCCGAGCTTGGCGCGAATCCAAAAACCCCCAATCCCCAGAATTAGGGTTCGAAAATGCCCGCCTCGATTCGATTGGTCCCTCCGCCGACGTGGGACCGGAGAAGCCCGCGGCGGTGAAGAAGGAGGTGGAGGTGGTGCACCCGTGGCCGGAGTGGATTGAACTAATGGAGAGGCTGGTGCAGCAGAACTACTTTGACCATAGGAGGAAGGACGAGGACAGAATGGTCCAAGAAATGGGCTTTGATGCCTCTGAAATCCATGATGATTCCCAGGGTTTGGATTTCAGGGATTTCAAGGCTGTTCATACTGCCTGTCTTAATTTCGGGAAGGACCGGTTTGATGTTTTCAGGTCCTTGTCGAGACAGGATATTCAAATTTTGGTGGGTTTTGGATGCCCGAGTACGGACAAGAAGGTGGTTTTCTCTTCGAAGCTGTTAAGGAAGCACACCCACCTCGATGAAGGAGATGTATGTAGTTCCTGCAGTTTAAGGAATTCCTGTGAAAGAGCATATCTGATTACTAACAAAGAGGATGAGGCGCGGACTATTGATATAATGCGTGTTTTATTGACTTATGGCTTTGATCCTATAAATGGATCAGTACAAAACAGGTCACTTCTAAAACAAAAAACCGTTAAAACTGTAGTCCGTAAGTTGCTTCATCAGGTTGTCAAGCTGAGTTCAGTTCCAATAGATCCTAGTCTACCTCCTCCGGTGATCAAAAAGCCACCCCCAAAAGTGAAGCAGCCTCCTCCCCCTCCAAGAAAACGAGTTGGACGTGATGACATTGAGATGAAAAAAGGGGACTGGCTATGCTCTAAGTGCGACTTCATGAATTTTGCCAAGAACAGCCTGTGCCTGCAGTGTGATGCCAAGCGTCCAAAGAGACAGCTGCTTCCAGGAGAATGGGAGTGCCCAGAGTGCAACTTTTTAAATTACAGGAGAAATATGGCATGTTTTCATTGTGATTGCAAGCGCCCACCTGATGAATATATTGAGAACAACATGCAAGAAAAGCAACGTGGCCCTAGGACTAGGATGGATAAGACTGCGATTCGGCCTGAGGCCTCTAATGCCTGGAATTTTGATTTTGATGACAATGAGTCAGATGGGGCAGATGTTGCTGCTTTTGAGTATGCGGATCCAGTAATGAGTGAAGGGTCTCTTGACACCCAGGCTCAAGGGGAAAATTTTCGACGTCCTGAATACGATTTCAGTAAAAATAGGAGAGTGTCAAGGGTTGACAATGAAGAATATTCTGATGCTGACACTATTAAGCCAGGCAGAGGGTTTGATGATTTTGATGATGAAGATGATGATATTGACAATTACGAGTTGGACACTCGTCCTAAAGATACAGCACAGAACACTTCTTCAATTGATTTTTCTGAATTGGAGGGATCTGAATCAGAAAACAGTGAAGGTCCAGACAATAATTTGCATGCTCGCAAAACACTCTCTCCATCTTACAATAAGCCATCTAAGTATATGCATCGACGGGCTGCATTATCTGTCTCAGATGATGATGAAATTGATTTAAATTCTGACAAAGACCTTTCAGTTCTTCCCAACCGAAGATCAAGTCATGTTGCTGATTCTAGATCAAGAGGTAGGGGTAGAAACTCAACTAGTCCATCAAAGAGAGTAAGCTTTGTATCTGATGATGAAGCTGGGCTCTACTCTGATGTGGATGATGATCTAGATCAAAATATTAGATCCAGACAAGGTAAACTGAACAAATTGAGTCCTGGGAGAAAAGACTTTCAGAGGAGAAGAAATTTTGATAGTGAAGATGATTCAATGTCTGGTTCAGAATCAGAGAATGATGATTTTCATTCTCATAAAAATAGGCACAGAGGAAATAAACCAAACAGTTTCAAAGGTGCACAATTTAAATCCAGCGGAATGAAGAGTGGCAGGAAGAACTCTTTCAGCGATGATGACTTTGATAGACCAACCCGAGGGTCTCGTGATAACAGAGGATTTCGAGGGAATGATTTTGATGGCAAGAGAATGAGTAACAGAGGTGTTGATAGGCAGAATTTTAAGGGGCCTAAAAGAGAAGCATTTGGAAATGGTGGTAGGAGAAACTCTTTTGGTGACGATTTTGATAGATCTAAACAAGTATCTCGTGGTAATAACAGAGGATTTCGGGAAAACAACTTTGATGGGCAGAGAATGAGTAACCGTGGCTTTGATAAACACGATTTTAAGGGACCTAAAAGAGAAGGATTTGGAAAGCAGCAGCGTGAAAGATTTAATAATGATTGGGACAAGGACAGGGACTTTGGTAACTTCAGCAATAGTCGACGCGTTATTGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

802

Amino Acids

92.25

Weight (kDa)

6.77

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	293 - 321	3.8e-08	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AatII	GACGTC	1 cut(s)	1282
AccB7I	CCANNNNNTGG	2 cut(s)	316, 358
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	2 cut(s)	784, 2389
AccII	CGCG	4 cut(s)	96, 191, 622, 2394
AciI	CCGC	9 cut(s)	52, 142, 165, 189, 191, 194, 622, 1220, 1983
AclWI	GGATC	8 cut(s)	76, 659, 685, 770, 1217, 1230, 1489, 1791
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	8 cut(s)	456, 574, 916, 1162, 1270, 1621, 1858, 2122
AcuI	CTGAAG	1 cut(s)	2362
AcyI	GRCGYC	2 cut(s)	36, 1279
AfaI	GTAC	2 cut(s)	484, 684
AfiI	CCNNNNNNNGG	8 cut(s)	125, 229, 316, 358, 484, 674, 1367, 2042
AflIII	ACRYGT	1 cut(s)	2392
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	7 cut(s)	242, 376, 455, 1458, 1881, 1960, 2402
AhdI	GACNNNNNGTC	1 cut(s)	1183
AhlI	ACTAGT	1 cut(s)	1709
AjiI	CACGTC	2 cut(s)	172, 860
AjnI	CCWGG	6 cut(s)	351, 979, 1157, 1254, 1360, 1828
AluBI	AGCT	6 cut(s)	89, 514, 757, 973, 1731, 1751
AluI	AGCT	6 cut(s)	89, 514, 757, 973, 1731, 1751
Alw21I	GWGCWC	2 cut(s)	222, 1969
Alw26I	GTCTC	5 cut(s)	436, 961, 1248, 1600, 2052
Alw44I	GTGCAC	2 cut(s)	218, 1965
AlwI	GGATC	8 cut(s)	76, 659, 685, 770, 1217, 1230, 1489, 1791
Ama87I	CYCGRG	2 cut(s)	478, 2040
AoxI	GGCC	5 cut(s)	227, 1105, 1139, 1146, 2132
ApaLI	GTGCAC	2 cut(s)	218, 1965
ApeKI	GCWGC	7 cut(s)	262, 826, 973, 1205, 1583, 2323, 2326
ApoI	RAATTY	8 cut(s)	456, 574, 916, 1162, 1270, 1621, 1858, 2122
ArsI	GACNNNNNNTTYG	4 cut(s)	1648, 1680, 2351, 2383
AsiGI	ACCGGT	1 cut(s)	414
Asp700I	GAANNNNTTC	2 cut(s)	1272, 2009
AspA2I	CCTAGG	1 cut(s)	1109
AspLEI	GCGC	3 cut(s)	96, 622, 1059
AsuHPI	GGTGA	3 cut(s)	208, 808, 2192
AsuII	TTCGAA	2 cut(s)	132, 509
AvaI	CYCGRG	2 cut(s)	478, 2040
AvaII	GGWCC	8 cut(s)	64, 158, 176, 307, 412, 432, 1505, 2297
AvrII	CCTAGG	1 cut(s)	1109
AxyI	CCTNAGG	1 cut(s)	1143
BaeGI	GKGCMC	3 cut(s)	222, 998, 1969
BamHI	GGATCC	1 cut(s)	1222
BanII	GRGCYC	1 cut(s)	1758
BauI	CACGAG	2 cut(s)	2049, 2211
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	222, 1969
BbvI	GCAGC	7 cut(s)	274, 838, 960, 1192, 1570, 2335, 2338
BccI	CCATC	7 cut(s)	1114, 1184, 1552, 1567, 1723, 2078, 2243
BciT130I	CCWGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
BclI	TGATCA	1 cut(s)	798
BcoDI	GTCTC	5 cut(s)	436, 961, 1248, 1600, 2052
BcuI	ACTAGT	1 cut(s)	1709
BfaI	CTAG	6 cut(s)	780, 1110, 1116, 1680, 1710, 1781
BfmI	CTRYAG	3 cut(s)	562, 723, 941
BfoI	RGCGCY	1 cut(s)	1060
BglII	AGATCT	1 cut(s)	2195
BisI	GCNGC	8 cut(s)	192, 263, 827, 974, 1206, 1584, 2324, 2327
BlnI	CCTAGG	1 cut(s)	1109
BlsI	GCNGC	8 cut(s)	193, 264, 828, 975, 1207, 1585, 2325, 2328
Bme1390I	CCNGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
Bme18I	GGWCC	8 cut(s)	64, 158, 176, 307, 412, 432, 1505, 2297
BmeRI	GACNNNNNGTC	1 cut(s)	1183
BmeT110I	CYCGRG	2 cut(s)	478, 2040
BmgBI	CACGTC	2 cut(s)	172, 860
BmiI	GGNNCC	5 cut(s)	160, 177, 1224, 2133, 2298
BmrFI	CCNGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
BmsI	GCATC	5 cut(s)	316, 464, 940, 1333, 1582
BoxI	GACNNNNGTC	1 cut(s)	1425
BpiI	GAAGAC	1 cut(s)	13
Bpu14I	TTCGAA	2 cut(s)	132, 509
BpuEI	CTTGAG	1 cut(s)	1245
BsaBI	GATNNNNATC	3 cut(s)	1486, 1776, 1782
BsaHI	GRCGYC	2 cut(s)	36, 1279
BsaI	GGTCTC	2 cut(s)	1248, 2052
BsaJI	CCNNGG	9 cut(s)	189, 224, 351, 352, 1109, 1254, 1829, 2041, 2269
BsaWI	WCCGGW	3 cut(s)	178, 414, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	1525, 1555
Bsc4I	CCNNNNNNNGG	8 cut(s)	125, 229, 316, 358, 484, 674, 1367, 2042
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	2 cut(s)	893, 1226
Bse21I	CCTNAGG	1 cut(s)	1143
Bse8I	GATNNNNATC	3 cut(s)	1486, 1776, 1782
BseBI	CCWGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
BseDI	CCNNGG	9 cut(s)	189, 224, 351, 352, 1109, 1254, 1829, 2041, 2269
BseGI	GGATG	4 cut(s)	479, 619, 1125, 1777
BseJI	GATNNNNATC	3 cut(s)	1486, 1776, 1782
BseLI	CCNNNNNNNGG	8 cut(s)	125, 229, 316, 358, 484, 674, 1367, 2042
BseMII	CTCAG	3 cut(s)	749, 1134, 1611
BseNI	ACTGG	2 cut(s)	893, 1226
BseRI	GAGGAG	3 cut(s)	780, 822, 1864
BseSI	GKGCMC	3 cut(s)	222, 998, 1969
BseXI	GCAGC	7 cut(s)	274, 838, 960, 1192, 1570, 2335, 2338
BseYI	CCCAGC	1 cut(s)	1751
BsgI	GTGCAG	1 cut(s)	281
Bsh1236I	CGCG	4 cut(s)	96, 191, 622, 2394
BshFI	GGCC	5 cut(s)	229, 1107, 1141, 1148, 2134
BshTI	ACCGGT	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	222, 1969
BsiHKCI	CYCGRG	2 cut(s)	478, 2040
BsiSI	CCGG	4 cut(s)	179, 230, 415, 794
BslFI	GGGAC	6 cut(s)	144, 189, 899, 2310, 2366, 2378
BslI	CCNNNNNNNGG	8 cut(s)	125, 229, 316, 358, 484, 674, 1367, 2042
BsmAI	GTCTC	5 cut(s)	436, 961, 1248, 1600, 2052
BsmFI	GGGAC	6 cut(s)	144, 189, 899, 2310, 2366, 2378
BsnI	GGCC	5 cut(s)	229, 1107, 1141, 1148, 2134
Bso31I	GGTCTC	2 cut(s)	1248, 2052
BsoBI	CYCGRG	2 cut(s)	478, 2040
Bsp119I	TTCGAA	2 cut(s)	132, 509
Bsp1286I	GDGCHC	4 cut(s)	222, 998, 1758, 1969
BspACI	CCGC	9 cut(s)	52, 142, 165, 189, 191, 194, 622, 1220, 1983
BspANI	GGCC	5 cut(s)	229, 1107, 1141, 1148, 2134
BspCNI	CTCAG	3 cut(s)	750, 1135, 1610
BspFNI	CGCG	4 cut(s)	96, 191, 622, 2394
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	5 cut(s)	160, 177, 1224, 2133, 2298
BspMAI	CTGCAG	2 cut(s)	566, 945
BspPI	GGATC	8 cut(s)	76, 659, 685, 770, 1217, 1230, 1489, 1791
BspT104I	TTCGAA	2 cut(s)	132, 509
BspTNI	GGTCTC	2 cut(s)	1248, 2052
BsrBI	CCGCTC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	893, 1226
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	9 cut(s)	189, 224, 351, 352, 1109, 1254, 1829, 2041, 2269
BssNI	GRCGYC	2 cut(s)	36, 1279
BssSI	CACGAG	2 cut(s)	2049, 2211
BssT1I	CCWWGG	1 cut(s)	1109
Bst2BI	CACGAG	2 cut(s)	2049, 2211
Bst2UI	CCWGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
Bst4CI	ACNGT	5 cut(s)	715, 724, 1499, 1955, 2270
Bst6I	CTCTTC	2 cut(s)	511, 1985
BstACI	GRCGYC	2 cut(s)	36, 1279
BstAPI	GCANNNNNTGC	1 cut(s)	1202
BstBI	TTCGAA	2 cut(s)	132, 509
BstC8I	GCNNGC	6 cut(s)	142, 189, 941, 1055, 1524, 1528
BstDEI	CTNAG	5 cut(s)	758, 900, 1143, 1563, 1597
BstDSI	CCRYGG	3 cut(s)	189, 224, 2269
BstF5I	GGATG	4 cut(s)	479, 619, 1125, 1777
BstFNI	CGCG	4 cut(s)	96, 191, 622, 2394
BstH2I	RGCGCY	1 cut(s)	1060
BstHHI	GCGC	3 cut(s)	96, 622, 1059
BstMAI	GTCTC	5 cut(s)	436, 961, 1248, 1600, 2052
BstMWI	GCNNNNNNNGC	7 cut(s)	226, 262, 903, 1002, 1096, 1154, 1202
BstNI	CCWGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
BstNSI	RCATGY	3 cut(s)	1038, 1090, 1526
BstPAI	GACNNNNGTC	1 cut(s)	1425
BstSCI	CCNGG	6 cut(s)	351, 979, 1157, 1254, 1360, 1828
BstSFI	CTRYAG	3 cut(s)	562, 723, 941
BstSLI	GKGCMC	3 cut(s)	222, 998, 1969
BstUI	CGCG	4 cut(s)	96, 191, 622, 2394
BstV1I	GCAGC	7 cut(s)	274, 838, 960, 1192, 1570, 2335, 2338
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	6 cut(s)	81, 775, 1222, 1481, 1796, 2195
BstXI	CCANNNNNNTGG	1 cut(s)	987
BstYI	RGATCY	6 cut(s)	81, 775, 1222, 1481, 1796, 2195
Bsu36I	CCTNAGG	1 cut(s)	1143
BsuRI	GGCC	5 cut(s)	229, 1107, 1141, 1148, 2134
BtgI	CCRYGG	3 cut(s)	189, 224, 2269
BtgZI	GCGATG	1 cut(s)	2031
BtrI	CACGTC	2 cut(s)	172, 860
BtsCI	GGATG	4 cut(s)	479, 619, 1125, 1777
BtsI	GCAGTG	1 cut(s)	950
BtsIMutI	CAGTG	2 cut(s)	950, 1504
Cac8I	GCNNGC	6 cut(s)	142, 189, 941, 1055, 1524, 1528
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	3 cut(s)	96, 622, 1059
Cfr10I	RCCGGY	1 cut(s)	414
Cfr42I	CCGCGG	1 cut(s)	192
CseI	GACGC	3 cut(s)	44, 947, 2400
Csp6I	GTAC	2 cut(s)	483, 683
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	6 cut(s)	341, 913, 1035, 1087, 1523, 1667
CviQI	GTAC	2 cut(s)	483, 683
DdeI	CTNAG	5 cut(s)	758, 900, 1143, 1563, 1597
DraI	TTTAAA	3 cut(s)	1014, 1620, 1975
DrdI	GACNNNNNNGTC	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	1183
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	2 cut(s)	511, 1985
Eam1105I	GACNNNNNGTC	1 cut(s)	1183
EarI	CTCTTC	2 cut(s)	511, 1985
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	1109
Eco147I	AGGCCT	1 cut(s)	1148
Eco24I	GRGCYC	1 cut(s)	1758
Eco31I	GGTCTC	2 cut(s)	1248, 2052
Eco47I	GGWCC	8 cut(s)	64, 158, 176, 307, 412, 432, 1505, 2297
Eco57I	CTGAAG	1 cut(s)	2362
Eco81I	CCTNAGG	1 cut(s)	1143
Eco88I	CYCGRG	2 cut(s)	478, 2040
EcoO109I	RGGNCCY	3 cut(s)	432, 2132, 2297
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	6 cut(s)	351, 979, 1157, 1254, 1360, 1828
EcoT14I	CCWWGG	1 cut(s)	1109
EcoT22I	ATGCAT	1 cut(s)	1575
EcoT38I	GRGCYC	1 cut(s)	1758
ErhI	CCWWGG	1 cut(s)	1109
FaeI	CATG	6 cut(s)	344, 916, 1038, 1090, 1526, 1670
FalI	AAGNNNNNCTT	4 cut(s)	893, 925, 1230, 1262
FaqI	GGGAC	6 cut(s)	144, 189, 899, 2310, 2366, 2378
FatI	CATG	6 cut(s)	340, 912, 1034, 1086, 1522, 1666
FauI	CCCGC	2 cut(s)	149, 196
FbaI	TGATCA	1 cut(s)	798
FblI	GTMKAC	2 cut(s)	784, 2389
Fnu4HI	GCNGC	8 cut(s)	192, 263, 827, 974, 1206, 1584, 2324, 2327
FokI	GGATG	4 cut(s)	486, 626, 1132, 1784
FriOI	GRGCYC	1 cut(s)	1758
Fsp4HI	GCNGC	8 cut(s)	192, 263, 827, 974, 1206, 1584, 2324, 2327
FspBI	CTAG	6 cut(s)	780, 1110, 1116, 1680, 1710, 1781
GlaI	GCGC	3 cut(s)	95, 621, 1058
GluI	GCNGC	8 cut(s)	192, 263, 827, 974, 1206, 1584, 2324, 2327
GsaI	CCCAGC	1 cut(s)	1755
HaeII	RGCGCY	1 cut(s)	1060
HaeIII	GGCC	5 cut(s)	229, 1107, 1141, 1148, 2134
HapII	CCGG	4 cut(s)	179, 230, 415, 794
HgaI	GACGC	3 cut(s)	44, 947, 2400
HhaI	GCGC	3 cut(s)	96, 622, 1059
Hin1I	GRCGYC	2 cut(s)	36, 1279
Hin1II	CATG	6 cut(s)	344, 916, 1038, 1090, 1526, 1670
Hin6I	GCGC	3 cut(s)	94, 620, 1057
HinP1I	GCGC	3 cut(s)	94, 620, 1057
HincII	GTYRAC	2 cut(s)	1324, 2390
HindII	GTYRAC	2 cut(s)	1324, 2390
HindIII	AAGCTT	1 cut(s)	1729
HpaII	CCGG	4 cut(s)	179, 230, 415, 794
HphI	GGTGA	3 cut(s)	208, 808, 2192
Hpy166II	GTNNAC	6 cut(s)	220, 785, 1324, 1811, 1967, 2390
Hpy8I	GTNNAC	6 cut(s)	220, 785, 1324, 1811, 1967, 2390
Hpy99I	CGWCG	5 cut(s)	38, 173, 1281, 1581, 2394
HpyAV	CCTTC	9 cut(s)	25, 196, 283, 403, 487, 536, 1232, 1496, 2303
HpyCH4III	ACNGT	5 cut(s)	715, 724, 1499, 1955, 2270
HpyCH4IV	ACGT	4 cut(s)	171, 859, 1102, 1279
HpyF10VI	GCNNNNNNNGC	7 cut(s)	226, 262, 903, 1002, 1096, 1154, 1202
HpyF3I	CTNAG	5 cut(s)	758, 900, 1143, 1563, 1597
HpySE526I	ACGT	4 cut(s)	171, 859, 1102, 1279
Hsp92I	GRCGYC	2 cut(s)	36, 1279
Hsp92II	CATG	6 cut(s)	344, 916, 1038, 1090, 1526, 1670
HspAI	GCGC	3 cut(s)	94, 620, 1057
Ksp22I	TGATCA	1 cut(s)	798
KspI	CCGCGG	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	7 cut(s)	274, 838, 960, 1192, 1570, 2335, 2338
LweI	GCATC	5 cut(s)	316, 464, 940, 1333, 1582
MaeI	CTAG	6 cut(s)	780, 1110, 1116, 1680, 1710, 1781
MaeII	ACGT	4 cut(s)	171, 859, 1102, 1279
MaeIII	GTNAC	5 cut(s)	693, 2099, 2180, 2264, 2372
MbiI	CCGCTC	1 cut(s)	54
MfeI	CAATTG	1 cut(s)	1458
MflI	RGATCY	6 cut(s)	81, 775, 1222, 1481, 1796, 2195
MhlI	GDGCHC	4 cut(s)	222, 998, 1758, 1969
MluI	ACGCGT	1 cut(s)	2392
MlyI	GAGTC	2 cut(s)	1193, 1834
MmeI	TCCRAC	3 cut(s)	81, 835, 1398
Mph1103I	ATGCAT	1 cut(s)	1575
MroXI	GAANNNNTTC	2 cut(s)	1272, 2009
MslI	CAYNNNNRTG	2 cut(s)	537, 872
MspA1I	CMGCKG	3 cut(s)	191, 973, 1983
MspI	CCGG	4 cut(s)	179, 230, 415, 794
MspR9I	CCNGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
MunI	CAATTG	1 cut(s)	1458
MvaI	CCWGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
MvnI	CGCG	4 cut(s)	96, 191, 622, 2394
MwoI	GCNNNNNNNGC	7 cut(s)	226, 262, 903, 1002, 1096, 1154, 1202
NlaIII	CATG	6 cut(s)	344, 916, 1038, 1090, 1526, 1670
NlaIV	GGNNCC	5 cut(s)	160, 177, 1224, 2133, 2298
NmuCI	GTSAC	2 cut(s)	693, 2180
NsiI	ATGCAT	1 cut(s)	1575
NspI	RCATGY	3 cut(s)	1038, 1090, 1526
NspV	TTCGAA	2 cut(s)	132, 509
PaeI	GCATGC	1 cut(s)	1526
PagI	TCATGA	1 cut(s)	912
PasI	CCCWGGG	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	1148
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 856
PdmI	GAANNNNTTC	2 cut(s)	1272, 2009
PfeI	GAWTC	8 cut(s)	98, 149, 347, 1135, 1487, 1676, 1877, 1895
PflMI	CCANNNNNTGG	2 cut(s)	316, 358
PfoI	TCCNGGA	1 cut(s)	979
PinAI	ACCGGT	1 cut(s)	414
PkrI	GCNGC	8 cut(s)	193, 264, 828, 975, 1207, 1585, 2325, 2328
PleI	GAGTC	2 cut(s)	1192, 1833
PpsI	GAGTC	2 cut(s)	1192, 1833
PpuMI	RGGWCCY	2 cut(s)	432, 2297
PshAI	GACNNNNGTC	1 cut(s)	1425
Psp5II	RGGWCCY	2 cut(s)	432, 2297
Psp6I	CCWGG	6 cut(s)	351, 979, 1157, 1254, 1360, 1828
PspFI	CCCAGC	1 cut(s)	1751
PspGI	CCWGG	6 cut(s)	351, 979, 1157, 1254, 1360, 1828
PspN4I	GGNNCC	5 cut(s)	160, 177, 1224, 2133, 2298
PspPPI	RGGWCCY	2 cut(s)	432, 2297
PstI	CTGCAG	2 cut(s)	566, 945
PsuI	RGATCY	6 cut(s)	81, 775, 1222, 1481, 1796, 2195
PvuII	CAGCTG	1 cut(s)	973
RsaI	GTAC	2 cut(s)	484, 684
RsaNI	GTAC	2 cut(s)	483, 683
RseI	CAYNNNNRTG	2 cut(s)	537, 872
SacII	CCGCGG	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	2388
SatI	GCNGC	8 cut(s)	192, 263, 827, 974, 1206, 1584, 2324, 2327
SchI	GAGTC	2 cut(s)	1193, 1834
ScrFI	CCNGG	6 cut(s)	353, 981, 1159, 1256, 1362, 1830
SduI	GDGCHC	4 cut(s)	222, 998, 1758, 1969
SfaNI	GCATC	5 cut(s)	316, 464, 940, 1333, 1582
SfcI	CTRYAG	3 cut(s)	562, 723, 941
Sfr303I	CCGCGG	1 cut(s)	192
SfuI	TTCGAA	2 cut(s)	132, 509
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	8 cut(s)	64, 158, 176, 307, 412, 432, 1505, 2297
SmiI	ATTTAAAT	2 cut(s)	1620, 1975
SmiMI	CAYNNNNRTG	2 cut(s)	537, 872
SmlI	CTYRAG	1 cut(s)	1260
SmoI	CTYRAG	1 cut(s)	1260
SpeI	ACTAGT	1 cut(s)	1709
SphI	GCATGC	1 cut(s)	1526
SseBI	AGGCCT	1 cut(s)	1148
SsiI	CCGC	9 cut(s)	52, 142, 165, 189, 191, 194, 622, 1220, 1983
SspI	AATATT	2 cut(s)	1337, 1792
SspMI	CTAG	6 cut(s)	780, 1110, 1116, 1680, 1710, 1781
StuI	AGGCCT	1 cut(s)	1148
StyD4I	CCNGG	6 cut(s)	351, 979, 1157, 1254, 1360, 1828
StyI	CCWWGG	1 cut(s)	1109
SwaI	ATTTAAAT	2 cut(s)	1620, 1975
TaaI	ACNGT	5 cut(s)	715, 724, 1499, 1955, 2270
TaiI	ACGT	4 cut(s)	174, 862, 1105, 1282
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	8 cut(s)	98, 149, 347, 1135, 1487, 1676, 1877, 1895
TscAI	CASTG	2 cut(s)	950, 1504
TseFI	GTSAC	2 cut(s)	693, 2180
TseI	GCWGC	7 cut(s)	262, 826, 973, 1205, 1583, 2323, 2326
Tsp45I	GTSAC	2 cut(s)	693, 2180
TspGWI	ACGGA	2 cut(s)	500, 719
TspRI	CASTG	2 cut(s)	950, 1504
Van91I	CCANNNNNTGG	2 cut(s)	316, 358
VneI	GTGCAC	2 cut(s)	218, 1965
VpaK11BI	GGWCC	8 cut(s)	64, 158, 176, 307, 412, 432, 1505, 2297
XapI	RAATTY	8 cut(s)	456, 574, 916, 1162, 1270, 1621, 1858, 2122
XbaI	TCTAGA	2 cut(s)	1679, 1780
XceI	RCATGY	3 cut(s)	1038, 1090, 1526
XmaJI	CCTAGG	1 cut(s)	1109
XmiI	GTMKAC	2 cut(s)	784, 2389
XmnI	GAANNNNTTC	2 cut(s)	1272, 2009
XspI	CTAG	6 cut(s)	780, 1110, 1116, 1680, 1710, 1781
ZraI	GACGTC	1 cut(s)	1280
Zsp2I	ATGCAT	1 cut(s)	1575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.