Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Reverse (-)

7757797 .. 7758225

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0046100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGGGAATGGGAGCTTATTAGGCAAGCTCATGGGCAGGTTTTGGTTGCTTTGTTTTTGTCAAATGTGGTGCTTTCGAGTTCGGTGGTGGATGCTTATGCCAAGTGTGGGGAGATGGCGGATGCTAGGAGATTGTTCGATGAGATGGCTGTGAGTGATGTTCTTGCTTGGACCACACTGGTTTCGGGATATGCCAAATGGGGTGATATGAAATCAGCTAGTGAGTTGTTTGATCGGATGCCTGAGAAGAACCCGGTGTCATGGACATCTATGATTTCGGGGTATGCTAGGAATGGATTGGGGCATGAAGCGCTTGCATTGTTTGCAGAGATGATGCTGTTTCAAATCAGGCCTGATCAGTTTACTTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTTAAGCATGGTAAAGCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

142

Amino Acids

15.68

Weight (kDa)

5.54

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	56 - 84	1.2e-07	PPR repeat
PPR_2	PF13041	84 - 131	1e-11	PPR repeat family
PPR	PF01535	86 - 112	4e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AciI	CCGC	1 cut(s)	119
AfeI	AGCGCT	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	4 cut(s)	16, 29, 218, 401
AluI	AGCT	4 cut(s)	16, 29, 218, 401
Aor51HI	AGCGCT	1 cut(s)	312
AoxI	GGCC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	171
BccI	CCATC	2 cut(s)	109, 139
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	254
BfaI	CTAG	4 cut(s)	126, 219, 288, 393
BfoI	RGCGCY	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	4 cut(s)	82, 112, 228, 324
BpuMI	CCSGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	97, 127, 243
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	108
BsnI	GGCC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	232, 355
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	235
BspMI	ACCTGC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	232, 355
BstAFI	CTTAAG	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	27, 315
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	97, 127, 243
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	2 cut(s)	235, 358
BstMBI	GATC	2 cut(s)	232, 355
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 310, 323, 398
BstSCI	CCNGG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	97, 127, 243
BtsIMutI	CAGTG	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	27, 315
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	171
CviAII	CATG	5 cut(s)	32, 261, 305, 413, 423
CviJI	RGCY	6 cut(s)	16, 29, 149, 218, 352, 401
CviKI_1	RGCY	6 cut(s)	16, 29, 149, 218, 352, 401
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	234, 357
DpnII	GATC	2 cut(s)	232, 355
EciI	GGCGGA	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	171
Eco47III	AGCGCT	1 cut(s)	312
FaeI	CATG	5 cut(s)	35, 264, 308, 416, 426
FatI	CATG	5 cut(s)	31, 260, 304, 412, 422
FbaI	TGATCA	1 cut(s)	355
FokI	GGATG	3 cut(s)	104, 134, 250
FspBI	CTAG	4 cut(s)	126, 219, 288, 393
GlaI	GCGC	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	5 cut(s)	35, 264, 308, 416, 426
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	317, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 310, 323, 398
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	35, 264, 308, 416, 426
HspAI	GCGC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	232, 355
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	23, 164, 255, 267, 334, 366
LweI	GCATC	4 cut(s)	82, 112, 228, 324
MaeI	CTAG	4 cut(s)	126, 219, 288, 393
MalI	GATC	2 cut(s)	234, 357
MboI	GATC	2 cut(s)	232, 355
MboII	GAAGA	1 cut(s)	259
MseI	TTAA	1 cut(s)	408
MspCI	CTTAAG	1 cut(s)	407
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	22, 310, 323, 398
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	2 cut(s)	232, 355
NlaIII	CATG	5 cut(s)	35, 264, 308, 416, 426
PceI	AGGCCT	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	232, 355
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	5 cut(s)	18, 31, 42, 220, 403
SfaNI	GCATC	4 cut(s)	82, 112, 228, 324
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	4 cut(s)	126, 219, 288, 393
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	252
TaqI	TCGA	2 cut(s)	77, 138
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	183
TspDTI	ATGAA	2 cut(s)	224, 321
TspRI	CASTG	1 cut(s)	183
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	171
XspI	CTAG	4 cut(s)	126, 219, 288, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.