Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013000.1

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Reverse (-)

46814 .. 48866

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013000.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgcgtgttttattgacttatggctttgatcctataaatggatcagtacaaaacaggtcacttctaaaacaaaaaaccgttaaaactgtagtccgtaagttgcttcatcaggttgtcaagctgagttcagttccaatagatcctagtctacctcctccggtgatcaaaaagccacccccaaaagtgaataagcctcctccccctccaagaaaacgagttggacgtgatgacattgagatgaaaaaaggggactggctatgctctaagtgcgacttcatgaattttgccaagaacagcctgtgcctgcagtgtgatgccaagcgtccaaagagacagctgcttccaggagaatgggagtgcccagagtgcaactttttaaattacaggagaaatatggcatgttttcattgtgattgcaagcgcccacctgacgaatatattgagaacaacatgcaagaaaaaaaactaatgcctggaattttgattttgatgacaatgagtcggatgttgctgcttttgaatatgcagatccaagggtttgatgattttggtgatgaagatgatgatattgacaattacgagttggacactcgtcctaaagattcagcacagaacacttcttcaattgatttttctgaattggagggatctgaatcagaaaacagtgaatgtccagacaataatttgcatgctcacaaaacactctctccatcttacaataagccatctaagtctatgcatcgacgggcagcattatctgtctcagatgatgatgaaattgatttaaattctgacaaagacctttcagttcttcccaaccgaagatcaagtcaggttgctgattctagatcaagaggtaggggtagaaactcaactagtccatcaaagagagtaagctttgtatctgatgatgaagctgggctctactctgatgtggatgatgatctagatcaaaatattagatccagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

323

Amino Acids

36.76

Weight (kDa)

6.55

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	148
AclWI	GGATC	6 cut(s)	23, 49, 134, 523, 655, 957
AcsI	RAATTY	3 cut(s)	280, 477, 787
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	520, 624
AhdI	GACNNNNNGTC	1 cut(s)	498
AhlI	ACTAGT	1 cut(s)	875
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	343, 472
AluBI	AGCT	4 cut(s)	121, 337, 897, 917
AluI	AGCT	4 cut(s)	121, 337, 897, 917
Alw26I	GTCTC	2 cut(s)	325, 766
AlwI	GGATC	6 cut(s)	23, 49, 134, 523, 655, 957
ApeKI	GCWGC	3 cut(s)	337, 511, 749
ApoI	RAATTY	3 cut(s)	280, 477, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	814, 846
AspLEI	GCGC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	172, 563
BaeGI	GKGCMC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	924
BbvI	GCAGC	3 cut(s)	324, 498, 761
BccI	CCATC	3 cut(s)	718, 733, 889
BciT130I	CCWGG	2 cut(s)	345, 474
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	325, 766
BcuI	ACTAGT	1 cut(s)	875
BfaI	CTAG	4 cut(s)	144, 846, 876, 947
BfmI	CTRYAG	2 cut(s)	87, 305
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	3 cut(s)	338, 512, 750
BlsI	GCNGC	3 cut(s)	339, 513, 751
Bme1390I	CCNGG	2 cut(s)	345, 474
BmeRI	GACNNNNNGTC	1 cut(s)	498
BmgBI	CACGTC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	345, 474
BmsI	GCATC	2 cut(s)	304, 748
BoxI	GACNNNNGTC	1 cut(s)	591
BsaBI	GATNNNNATC	3 cut(s)	652, 942, 948
BsaJI	CCNNGG	1 cut(s)	532
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	3 cut(s)	652, 942, 948
BseBI	CCWGG	2 cut(s)	345, 474
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	2 cut(s)	510, 943
BseJI	GATNNNNATC	3 cut(s)	652, 942, 948
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	113, 777
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	144, 186
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	324, 498, 761
BseYI	CCCAGC	1 cut(s)	917
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	325, 766
BsmFI	GGGAC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	362, 924
BspCNI	CTCAG	2 cut(s)	114, 776
BspHI	TCATGA	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	6 cut(s)	23, 49, 134, 523, 655, 957
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	532
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	2 cut(s)	345, 474
Bst4CI	ACNGT	3 cut(s)	79, 88, 665
BstC8I	GCNNGC	3 cut(s)	305, 419, 690
BstDEI	CTNAG	4 cut(s)	122, 264, 729, 763
BstF5I	GGATG	2 cut(s)	510, 943
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstMAI	GTCTC	2 cut(s)	325, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 366
BstNI	CCWGG	2 cut(s)	345, 474
BstNSI	RCATGY	3 cut(s)	402, 454, 692
BstPAI	GACNNNNGTC	1 cut(s)	591
BstSCI	CCNGG	2 cut(s)	343, 472
BstSFI	CTRYAG	2 cut(s)	87, 305
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	324, 498, 761
BstX2I	RGATCY	4 cut(s)	139, 528, 647, 962
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	4 cut(s)	139, 528, 647, 962
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	510, 943
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	2 cut(s)	314, 670
Cac8I	GCNNGC	3 cut(s)	305, 419, 690
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	1 cut(s)	423
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	4 cut(s)	277, 399, 451, 689
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	4 cut(s)	122, 264, 729, 763
DraI	TTTAAA	2 cut(s)	378, 786
DriI	GACNNNNNGTC	1 cut(s)	498
Eam1105I	GACNNNNNGTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	924
EcoRII	CCWGG	2 cut(s)	343, 472
EcoT14I	CCWWGG	1 cut(s)	532
EcoT22I	ATGCAT	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	4 cut(s)	280, 402, 454, 692
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	4 cut(s)	276, 398, 450, 688
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	338, 512, 750
FokI	GGATG	2 cut(s)	517, 950
FriOI	GRGCYC	1 cut(s)	924
Fsp4HI	GCNGC	3 cut(s)	338, 512, 750
FspBI	CTAG	4 cut(s)	144, 846, 876, 947
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	3 cut(s)	338, 512, 750
GsaI	CCCAGC	1 cut(s)	921
HaeII	RGCGCY	1 cut(s)	424
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	4 cut(s)	280, 402, 454, 692
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	895
HinfI	GANTC	4 cut(s)	499, 602, 653, 842
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	172, 563
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	8 cut(s)	504, 637, 652, 658, 766, 793, 907, 931
Hpy188III	TCNNGA	6 cut(s)	277, 674, 846, 852, 947, 966
Hpy8I	GTNNAC	1 cut(s)	149
Hpy99I	CGWCG	1 cut(s)	747
HpyCH4III	ACNGT	3 cut(s)	79, 88, 665
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	7 cut(s)	307, 369, 417, 454, 526, 688, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 366
HpyF3I	CTNAG	4 cut(s)	122, 264, 729, 763
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	4 cut(s)	280, 402, 454, 692
HspAI	GCGC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	162
Lsp1109I	GCAGC	3 cut(s)	324, 498, 761
LweI	GCATC	2 cut(s)	304, 748
MaeI	CTAG	4 cut(s)	144, 846, 876, 947
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	57
MboII	GAAGA	4 cut(s)	569, 612, 803, 834
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	4 cut(s)	139, 528, 647, 962
MhlI	GDGCHC	2 cut(s)	362, 924
MluCI	AATT	9 cut(s)	280, 379, 477, 574, 624, 638, 682, 777, 787
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	3 cut(s)	199, 482, 564
MnlI	CCTC	7 cut(s)	162, 165, 204, 207, 213, 637, 848
Mph1103I	ATGCAT	1 cut(s)	741
MseI	TTAA	3 cut(s)	81, 377, 785
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	345, 474
MunI	CAATTG	1 cut(s)	624
MvaI	CCWGG	2 cut(s)	345, 474
MwoI	GCNNNNNNNGC	2 cut(s)	267, 366
NlaIII	CATG	4 cut(s)	280, 402, 454, 692
NmuCI	GTSAC	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	741
NspI	RCATGY	3 cut(s)	402, 454, 692
PaeI	GCATGC	1 cut(s)	692
PagI	TCATGA	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	602, 653, 842
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	339, 513, 751
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PshAI	GACNNNNGTC	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	343, 472
PspFI	CCCAGC	1 cut(s)	917
PspGI	CCWGG	2 cut(s)	343, 472
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	4 cut(s)	139, 528, 647, 962
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	81, 377, 785
SatI	GCNGC	3 cut(s)	338, 512, 750
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	2 cut(s)	345, 474
SduI	GDGCHC	2 cut(s)	362, 924
SfaNI	GCATC	2 cut(s)	304, 748
SfcI	CTRYAG	2 cut(s)	87, 305
SmiI	ATTTAAAT	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	875
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	9 cut(s)	280, 379, 477, 574, 624, 638, 682, 777, 787
SspI	AATATT	1 cut(s)	958
SspMI	CTAG	4 cut(s)	144, 846, 876, 947
StyD4I	CCNGG	2 cut(s)	343, 472
StyI	CCWWGG	1 cut(s)	532
SwaI	ATTTAAAT	1 cut(s)	786
TaaI	ACNGT	3 cut(s)	79, 88, 665
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	742
TasI	AATT	9 cut(s)	280, 379, 477, 574, 624, 638, 682, 777, 787
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	602, 653, 842
Tru1I	TTAA	3 cut(s)	81, 377, 785
Tru9I	TTAA	3 cut(s)	81, 377, 785
TscAI	CASTG	2 cut(s)	314, 670
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	3 cut(s)	337, 511, 749
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	8 cut(s)	95, 254, 265, 293, 395, 570, 789, 927
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	314, 670
XapI	RAATTY	3 cut(s)	280, 477, 787
XbaI	TCTAGA	2 cut(s)	845, 946
XceI	RCATGY	3 cut(s)	402, 454, 692
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	4 cut(s)	144, 846, 876, 947
Zsp2I	ATGCAT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.