Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Forward (+)

57419424 .. 57421667

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCGTGTTTTATTGACTTATGGCTTTGATCCTATAAATGGATCAGTACAAAACAAGTCACTTCTGAAACAAAAATCCGTTAAAAATGTAGTCCGTAAGTTGCTTCATAAGGTTGTCAAGCTGAGTTCAGTTCCAATAGATCCTAGTCTGCTACCTCCTCCGGTGATCAAAAAGCCACCCCCAAAAGTGAAGCAGCCTCCTCCCCCTCCAAGAAAACGAGTTGGGCGCAATGACATTGAGATGAAAAAAGGGGCCAGTGCTCTAATTGCCAGGTGCGACTTCATGAATTTTGCCAAGAACAGCCTGTGCCTGCAGTGTGATGCCAAGCGTCCAAAGAGACAGCTGCTTCCAGGAGAATGGGAATGCCCAGAGCAAGATATGATTCTACGCCCACCTGACGAATATATTGAGAATAACATGCAAGAAAAGCAACGTGGCCCTAGGACTAGGATGGATAAGACTGCGATTCGGCCCGAGGCCTCTAATGCCTGGAATTTTGATTTTGATGACAATGAGTCGGATGTTGCTGCTTTTGAATACGCAGATCCAGGATCTGAATCAGAAAACAGTGAAGGTCCAGACAATAATCTGCAAGCTCGCAAAACGAACACTCCATCTTACAATAAGCCATCCAAGTCTATGCATCGACGGGCAGCATTATCTGTCTCAGATGATGATGAAATTGATATAAATTCTGACGAAGACATTTCAGTTCTTCCCAAGTCCCAACCAGAGATCATGTCATCTGGGCTCTACTCTGATGTGGATGATTATCTAGATCAAAATATTAGATCCAGAGAAGGTAAACTGAACAAATTGGGTTCTGGGAGAAAAGCCTTTCAGAGGAGAAGAAATTTTGATAGTGATGATGATTCTGTGTCTGGTTCAAACAAAACAGTTTCAAAGGTGCACAATTTGAATCCAGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

311

Amino Acids

34.94

Weight (kDa)

8.71

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	23, 49, 134, 539, 559, 786
AcsI	RAATTY	4 cut(s)	286, 493, 691, 853
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	38, 843
AgsI	TTSAA	4 cut(s)	536, 888, 903, 919
AhdI	GACNNNNNGTC	1 cut(s)	514
AjnI	CCWGG	4 cut(s)	269, 349, 488, 547
AluBI	AGCT	3 cut(s)	121, 343, 596
AluI	AGCT	3 cut(s)	121, 343, 596
Alw21I	GWGCWC	2 cut(s)	262, 912
Alw26I	GTCTC	2 cut(s)	331, 670
Alw44I	GTGCAC	1 cut(s)	908
AlwI	GGATC	6 cut(s)	23, 49, 134, 539, 559, 786
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	4 cut(s)	252, 436, 470, 477
ApaLI	GTGCAC	1 cut(s)	908
ApeKI	GCWGC	4 cut(s)	193, 343, 527, 653
ApoI	RAATTY	4 cut(s)	286, 493, 691, 853
AspA2I	CCTAGG	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	4 cut(s)	252, 437, 471, 575
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	575
AvrII	CCTAGG	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	912
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	2 cut(s)	262, 912
BbvI	GCAGC	4 cut(s)	205, 330, 514, 665
BccI	CCATC	3 cut(s)	445, 622, 637
BciT130I	CCWGG	4 cut(s)	271, 351, 490, 549
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	331, 670
BfaI	CTAG	4 cut(s)	144, 441, 447, 776
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	4 cut(s)	194, 344, 528, 654
BlnI	CCTAGG	1 cut(s)	440
BlsI	GCNGC	4 cut(s)	195, 345, 529, 655
Bme1390I	CCNGG	4 cut(s)	271, 351, 490, 549
Bme18I	GGWCC	1 cut(s)	575
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	4 cut(s)	252, 437, 471, 575
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	4 cut(s)	271, 351, 490, 549
BmsI	GCATC	2 cut(s)	310, 652
BpiI	GAAGAC	1 cut(s)	708
BsaBI	GATNNNNATC	2 cut(s)	556, 771
BsaJI	CCNNGG	2 cut(s)	440, 474
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 843
Bse1I	ACTGG	2 cut(s)	255, 923
Bse3DI	GCAATG	1 cut(s)	235
Bse8I	GATNNNNATC	2 cut(s)	556, 771
BseBI	CCWGG	4 cut(s)	271, 351, 490, 549
BseDI	CCNNGG	2 cut(s)	440, 474
BseGI	GGATG	4 cut(s)	456, 526, 629, 772
BseJI	GATNNNNATC	2 cut(s)	556, 771
BseLI	CCNNNNNNNGG	2 cut(s)	38, 843
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	113, 681
BseNI	ACTGG	2 cut(s)	255, 923
BseRI	GAGGAG	3 cut(s)	147, 189, 859
BseSI	GKGCMC	1 cut(s)	912
BseXI	GCAGC	4 cut(s)	205, 330, 514, 665
BshFI	GGCC	4 cut(s)	254, 438, 472, 479
BsiHKAI	GWGCWC	2 cut(s)	262, 912
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	2 cut(s)	38, 843
BsmAI	GTCTC	2 cut(s)	331, 670
BsmFI	GGGAC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	254, 438, 472, 479
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	3 cut(s)	262, 753, 912
Bsp143I	GATC	9 cut(s)	28, 41, 139, 165, 544, 551, 735, 778, 791
BspANI	GGCC	4 cut(s)	254, 438, 472, 479
BspCNI	CTCAG	2 cut(s)	114, 680
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	6 cut(s)	23, 49, 134, 539, 559, 786
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	255, 923
BssECI	CCNNGG	2 cut(s)	440, 474
BssMI	GATC	9 cut(s)	28, 41, 139, 165, 544, 551, 735, 778, 791
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	4 cut(s)	271, 351, 490, 549
Bst4CI	ACNGT	2 cut(s)	569, 898
BstC8I	GCNNGC	3 cut(s)	311, 594, 598
BstDEI	CTNAG	2 cut(s)	122, 667
BstENI	CCTNNNNNAGG	1 cut(s)	841
BstF5I	GGATG	4 cut(s)	456, 526, 629, 772
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	9 cut(s)	31, 44, 142, 168, 547, 554, 738, 781, 794
BstMAI	GTCTC	2 cut(s)	331, 670
BstMBI	GATC	9 cut(s)	28, 41, 139, 165, 544, 551, 735, 778, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 427, 485
BstNI	CCWGG	4 cut(s)	271, 351, 490, 549
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	4 cut(s)	269, 349, 488, 547
BstSFI	CTRYAG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	912
BstV1I	GCAGC	4 cut(s)	205, 330, 514, 665
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	4 cut(s)	139, 544, 551, 791
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	4 cut(s)	139, 544, 551, 791
BsuRI	GGCC	4 cut(s)	254, 438, 472, 479
BtsCI	GGATG	4 cut(s)	456, 526, 629, 772
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	4 cut(s)	262, 320, 574, 930
Cac8I	GCNNGC	3 cut(s)	311, 594, 598
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	4 cut(s)	252, 437, 471, 575
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	3 cut(s)	283, 418, 739
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	2 cut(s)	122, 667
DpnI	GATC	9 cut(s)	30, 43, 141, 167, 546, 553, 737, 780, 793
DpnII	GATC	9 cut(s)	28, 41, 139, 165, 544, 551, 735, 778, 791
DriI	GACNNNNNGTC	1 cut(s)	514
Eam1105I	GACNNNNNGTC	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	753
Eco47I	GGWCC	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	841
EcoRII	CCWGG	4 cut(s)	269, 349, 488, 547
EcoT14I	CCWWGG	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	3 cut(s)	286, 421, 742
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	3 cut(s)	282, 417, 738
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	194, 344, 528, 654
FokI	GGATG	4 cut(s)	463, 533, 616, 779
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	4 cut(s)	194, 344, 528, 654
FspBI	CTAG	4 cut(s)	144, 441, 447, 776
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	4 cut(s)	194, 344, 528, 654
HaeIII	GGCC	4 cut(s)	254, 438, 472, 479
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	286, 421, 742
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	6 cut(s)	382, 466, 515, 557, 872, 919
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	806, 910
Hpy188I	TCNGA	8 cut(s)	66, 520, 556, 562, 670, 697, 760, 843
Hpy188III	TCNNGA	4 cut(s)	283, 578, 776, 795
Hpy8I	GTNNAC	2 cut(s)	806, 910
Hpy99I	CGWCG	1 cut(s)	651
HpyAV	CCTTC	2 cut(s)	566, 794
HpyCH4III	ACNGT	2 cut(s)	569, 898
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	313, 421, 592, 643, 910
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 427, 485
HpyF3I	CTNAG	2 cut(s)	122, 667
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	3 cut(s)	286, 421, 742
HspAI	GCGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	9 cut(s)	28, 41, 139, 165, 544, 551, 735, 778, 791
Lsp1109I	GCAGC	4 cut(s)	205, 330, 514, 665
LweI	GCATC	2 cut(s)	310, 652
MaeI	CTAG	4 cut(s)	144, 441, 447, 776
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	9 cut(s)	30, 43, 141, 167, 546, 553, 737, 780, 793
MboI	GATC	9 cut(s)	28, 41, 139, 165, 544, 551, 735, 778, 791
MboII	GAAGA	3 cut(s)	707, 713, 861
MflI	RGATCY	4 cut(s)	139, 544, 551, 791
MhlI	GDGCHC	3 cut(s)	262, 753, 912
MluCI	AATT	8 cut(s)	264, 286, 493, 681, 691, 815, 853, 913
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	8 cut(s)	165, 168, 207, 210, 216, 469, 490, 837
Mph1103I	ATGCAT	1 cut(s)	645
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	4 cut(s)	271, 351, 490, 549
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	4 cut(s)	271, 351, 490, 549
MwoI	GCNNNNNNNGC	3 cut(s)	266, 427, 485
NdeII	GATC	9 cut(s)	28, 41, 139, 165, 544, 551, 735, 778, 791
NlaIII	CATG	3 cut(s)	286, 421, 742
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	645
NspI	RCATGY	1 cut(s)	421
PagI	TCATGA	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	479
PctI	GAATGC	1 cut(s)	368
PfeI	GAWTC	5 cut(s)	382, 466, 557, 872, 919
PfoI	TCCNGGA	2 cut(s)	349, 547
PkrI	GCNGC	4 cut(s)	195, 345, 529, 655
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp6I	CCWGG	4 cut(s)	269, 349, 488, 547
PspGI	CCWGG	4 cut(s)	269, 349, 488, 547
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	4 cut(s)	252, 437, 471, 575
PstI	CTGCAG	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	4 cut(s)	139, 544, 551, 791
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	4 cut(s)	194, 344, 528, 654
Sau3AI	GATC	9 cut(s)	28, 41, 139, 165, 544, 551, 735, 778, 791
Sau96I	GGNCC	4 cut(s)	252, 437, 471, 575
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	4 cut(s)	271, 351, 490, 549
SduI	GDGCHC	3 cut(s)	262, 753, 912
SfaNI	GCATC	2 cut(s)	310, 652
SfcI	CTRYAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	8 cut(s)	264, 286, 493, 681, 691, 815, 853, 913
SseBI	AGGCCT	1 cut(s)	479
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	4 cut(s)	144, 441, 447, 776
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	4 cut(s)	269, 349, 488, 547
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	569, 898
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	1 cut(s)	646
TasI	AATT	8 cut(s)	264, 286, 493, 681, 691, 815, 853, 913
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	5 cut(s)	382, 466, 557, 872, 919
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	4 cut(s)	262, 320, 574, 930
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	4 cut(s)	193, 343, 527, 653
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	5 cut(s)	95, 257, 271, 299, 693
TspGWI	ACGGA	2 cut(s)	67, 83
TspRI	CASTG	4 cut(s)	262, 320, 574, 930
VneI	GTGCAC	1 cut(s)	908
VpaK11BI	GGWCC	1 cut(s)	575
XagI	CCTNNNNNAGG	1 cut(s)	841
XapI	RAATTY	4 cut(s)	286, 493, 691, 853
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	1 cut(s)	421
XmaJI	CCTAGG	1 cut(s)	440
XspI	CTAG	4 cut(s)	144, 441, 447, 776
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.