Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Reverse (-)

45434217 .. 45438248

Gene Structure 4032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGGCACAATCTCCGTACTCTCTACTCCTCCTCAGGCGTTTGATCTCTCGCTATTCCTTAAACCCAAAACCCTCCCCGCCTCTCTTCTCTCTCCTAAAACCCTTCTCTACCTCCTCCTCGAACCCAAACCCCTCCTCTCTCTCCGCTCGCCTCAGCTTCGTCTTCGACCAAATCGACGCCATCGAGAAAGACCGCTCCGACAAGGACCAAACCCTCCAAAAGATCCGAGCTTGGCGCGAATCTAAAAACCCCCAATCCCCAGAATTAGGGTTCGAAAATCCCCACCTCGATTCGATTGGTCCCTCCGCCGCCGCCGGCGATGTGGGACCGCAGAAGCCCGCGGCGGCGGTGAAGAAGGAGGTGGAGGTGGTGCACCCGTGGCCGGAGTGGATTGAATTGATGGAGAGGCTGGTGCAGCAGAACTACTTTGACCATAGGAGGAAGGACGAGGACAGAATGGTCCAAGAAATGGGCTTTGATGCCTCTGAAATACATGATGATTCCCAGGGTTTGGATTTCAGGGATTTCAAGGCTGTTCATACTGCTTGTCTTAATTTCGGGAAGGACCGGTTTGATATTTTCAGGTCCTTGTCGAGACAGGATATTCAAATTTTGGTGGGTTTTGGATGCCCGAGTACGGACAAGAAGGTGGTTTTCTCTTCGAAGCTGTTAAGGAAGCACACCCACCTTGATGAAGGAGATGTTTGTAGTTCCTGCAGTTTAAGGAATTCCTGTGAAAGAGCATATCTGATTACTAACAAAGAGGATGAGGCACGGACTATTGATATAATGCGTGTTTTATTGACCTATGGCTTTGATCCTATAAATGGATCAGTACAAAACAGGTCACTTCTAAAACAAAAAGCCGTTAAAACTGTAGTCCGTAAGTTGCTTCATCAGGTTGTCAAGATGAGTTCAGTTCCAATAGATCCTAGTCTACCTCCTCCGGTGATCAAAAAGCCACCCCCAAAAGTGAAGCAGCCTCCTCCCCATCCAAGAAAACGAGTTGGACGTGATGACATTGAGATGAAAAAAGGGGACTGGCTATGCTCTAAGTGCGACTTTATGAATTTTGCCAAGAACAGCCTGTGCCTGCAGTGTGATGCCAAGCGTCCAAAGAGACAGCTGCTTCCAGGAGAATGGGAGTGCCCAGAGTGCAACTTTTTAAATTACAGGAGAAATATGGCATGTTTTCATTGTGATTGCAAGCGCCCACCTGATGAATATATTGAGAACAACATGCAAGAAAAGCAACGTGGCCCTAGGACTAGGATGGATAAGACTGCGATTCGGCCTGAGGCCTCTAATGCCTGGAATTTTGATTTTGATGACAATGAGTCAGATGGGGCAGATGTTGCTGCTTTTGAGTACGCGGATCCAGTAACGAGTGAAGGGTCTCTTGACACCCAGGCTCAAGGGGAAAATTTTCGACGTCCTGAATACGATTTCAGTAAAAATAGGAGAGTATCAAGGTTTGACAATGAAGAATATTCTGATGCTGACACTATTAAGCCAGGCAGAGGTTTTGATGATTTTGATAATGAAGATGATGATATTGACAATTACGAGTTGGACACTCATACTAAAGATTCAGCAAAGAACACTTCTTCAATTGATTTTTCTGAATTGGAGGGATCTGAATCAGAAAACAGTGAAGGTCCAGACAATAATTTGCATGCTCGCAAAACAAACTCTCCATCTTACAATAAGCCTTTTAAGTCTATGCATCGACGGGCAGCATTATCTGTCTCAGATGATGATGAAATTGATATAAATTCTGACGAAGACCTTTCAATTCTTCCCAACCGAAGATCAAGTCATGTTGCTGATTCTAGATCAAGAGGTAGGGGTAGAAACTCAACCGGTCCATCAAAGAGAGTAAGCTTTGTATCTGATGATGAAGCTGGGCTCTACTCTGATGTGGATGATGATCTAGATCAAAATATTAGATCCAGACAAGGTAAACTGAACAAATTGAGTTCTGGGAGAAAAGACTTTCAGAGGAGAAGAAATTTTGATAGTGAAGATGATTCAATGTCTGGTTCAGAATCAGAGAACGATGATTTTCATTCTCATAAAAATAGGCACAGAGGAAATAAACCAAACAGTTTCAAAGGTGCACAATTTAAATCCAGCGGAATGAAGAGTGGCAGGAAGAACTCTTTCAGCGATGATGACTTTGATAGACCAACCCGAGGGTCTCGTGATAGCAGAGGATTTCGAGGGAATGATTTTGATGGGCAGAGAATGAGTAACAGAGGTGTTGATAGGCAGAATTTTAAGGGGCCTAAAAGAGAAGCGTTTGGAAATGGTGGTAGGAGAAACTCTTTTGGTGACGATTTTGATAGATCTAAACAGGTATCTCGTGGTAATAACAGAGGATTTCGGGAAAACAACTTTGATGGGCAGAGAATGAGTAACCGTGGCTTTGATAAACACGATTTTAAGGGACCTAAAAGAGAAGGATTTGGAAAGCAGAATGATAGGGACAAGGACAGGGACTTTGGTAACTTTAGCAATAGTCGACGCGTTATTGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

848

Amino Acids

96.81

Weight (kDa)

7.84

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	344 - 372	4.1e-08	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	458
AatII	GACGTC	1 cut(s)	1435
AccB7I	CCANNNNNTGG	2 cut(s)	469, 511
AccBSI	CCGCTC	2 cut(s)	146, 195
AccI	GTMKAC	2 cut(s)	937, 2524
AccII	CGCG	4 cut(s)	237, 341, 1373, 2529
AclWI	GGATC	8 cut(s)	217, 812, 838, 923, 1370, 1383, 1642, 1944
AcoI	YGGCCR	1 cut(s)	380
AcsI	RAATTY	8 cut(s)	609, 727, 1069, 1315, 1423, 1774, 2011, 2275
AcyI	GRCGYC	2 cut(s)	177, 1432
AfaI	GTAC	4 cut(s)	17, 637, 837, 1370
AfiI	CCNNNNNNNGG	8 cut(s)	266, 382, 469, 511, 637, 827, 1520, 2195
AflIII	ACRYGT	1 cut(s)	2527
AgeI	ACCGGT	2 cut(s)	567, 1862
AgsI	TTSAA	8 cut(s)	395, 529, 608, 1611, 1794, 2034, 2113, 2537
AhdI	GACNNNNNGTC	1 cut(s)	1336
AjiI	CACGTC	1 cut(s)	1013
AjnI	CCWGG	5 cut(s)	504, 1132, 1310, 1407, 1513
AluBI	AGCT	6 cut(s)	156, 230, 667, 1126, 1884, 1904
AluI	AGCT	6 cut(s)	156, 230, 667, 1126, 1884, 1904
Alw21I	GWGCWC	2 cut(s)	375, 2122
Alw26I	GTCTC	5 cut(s)	589, 1114, 1401, 1753, 2205
Alw44I	GTGCAC	2 cut(s)	371, 2118
AlwI	GGATC	8 cut(s)	217, 812, 838, 923, 1370, 1383, 1642, 1944
Ama87I	CYCGRG	2 cut(s)	631, 2193
AoxI	GGCC	5 cut(s)	380, 1258, 1292, 1299, 2285
ApaLI	GTGCAC	2 cut(s)	371, 2118
ApeKI	GCWGC	5 cut(s)	415, 979, 1126, 1358, 1736
ApoI	RAATTY	8 cut(s)	609, 727, 1069, 1315, 1423, 1774, 2011, 2275
ArsI	GACNNNNNNTTYG	4 cut(s)	1801, 1833, 2486, 2518
AsiGI	ACCGGT	2 cut(s)	567, 1862
Asp700I	GAANNNNTTC	2 cut(s)	1425, 2162
AspA2I	CCTAGG	1 cut(s)	1262
AspLEI	GCGC	2 cut(s)	237, 1212
AsuHPI	GGTGA	3 cut(s)	361, 961, 2345
AsuII	TTCGAA	2 cut(s)	273, 662
AvaI	CYCGRG	2 cut(s)	631, 2193
AvaII	GGWCC	9 cut(s)	205, 299, 326, 460, 565, 585, 1658, 1865, 2450
AvrII	CCTAGG	1 cut(s)	1262
AxyI	CCTNAGG	2 cut(s)	32, 1296
BaeGI	GKGCMC	3 cut(s)	375, 1151, 2122
BamHI	GGATCC	1 cut(s)	1375
BanII	GRGCYC	1 cut(s)	1911
BauI	CACGAG	2 cut(s)	2202, 2364
BbsI	GAAGAC	2 cut(s)	154, 1791
Bbv12I	GWGCWC	2 cut(s)	375, 2122
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	5 cut(s)	427, 991, 1113, 1345, 1748
BccI	CCATC	9 cut(s)	188, 394, 999, 1267, 1337, 1705, 1876, 2231, 2396
BceAI	ACGGC	1 cut(s)	851
BciT130I	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	5 cut(s)	589, 1114, 1401, 1753, 2205
BfaI	CTAG	5 cut(s)	933, 1263, 1269, 1833, 1934
BfmI	CTRYAG	3 cut(s)	715, 876, 1094
BfoI	RGCGCY	1 cut(s)	1213
BglII	AGATCT	1 cut(s)	2348
BisI	GCNGC	9 cut(s)	309, 312, 342, 345, 416, 980, 1127, 1359, 1737
BlnI	CCTAGG	1 cut(s)	1262
BlsI	GCNGC	9 cut(s)	310, 313, 343, 346, 417, 981, 1128, 1360, 1738
Bme1390I	CCNGG	5 cut(s)	506, 1134, 1312, 1409, 1515
Bme18I	GGWCC	9 cut(s)	205, 299, 326, 460, 565, 585, 1658, 1865, 2450
BmeRI	GACNNNNNGTC	1 cut(s)	1336
BmeT110I	CYCGRG	2 cut(s)	631, 2193
BmgBI	CACGTC	1 cut(s)	1013
BmiI	GGNNCC	5 cut(s)	301, 327, 1377, 2286, 2451
BmrFI	CCNGG	5 cut(s)	506, 1134, 1312, 1409, 1515
BmsI	GCATC	5 cut(s)	469, 617, 1093, 1486, 1735
BpiI	GAAGAC	2 cut(s)	154, 1791
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	2 cut(s)	273, 662
BpuEI	CTTGAG	1 cut(s)	1398
BsaBI	GATNNNNATC	3 cut(s)	1639, 1929, 1935
BsaHI	GRCGYC	2 cut(s)	177, 1432
BsaI	GGTCTC	2 cut(s)	1401, 2205
BsaJI	CCNNGG	8 cut(s)	339, 377, 504, 505, 1262, 1407, 2194, 2422
BsaWI	WCCGGW	3 cut(s)	567, 946, 1862
BsaXI	ACNNNNNCTCC	2 cut(s)	1678, 1708
Bsc4I	CCNNNNNNNGG	8 cut(s)	266, 382, 469, 511, 637, 827, 1520, 2195
Bse118I	RCCGGY	3 cut(s)	314, 567, 1862
Bse1I	ACTGG	2 cut(s)	1046, 1379
Bse21I	CCTNAGG	2 cut(s)	32, 1296
Bse8I	GATNNNNATC	3 cut(s)	1639, 1929, 1935
BseBI	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
BseDI	CCNNGG	8 cut(s)	339, 377, 504, 505, 1262, 1407, 2194, 2422
BseGI	GGATG	5 cut(s)	632, 772, 991, 1278, 1930
BseJI	GATNNNNATC	3 cut(s)	1639, 1929, 1935
BseLI	CCNNNNNNNGG	8 cut(s)	266, 382, 469, 511, 637, 827, 1520, 2195
BseMII	CTCAG	4 cut(s)	46, 166, 1287, 1764
BseNI	ACTGG	2 cut(s)	1046, 1379
BseRI	GAGGAG	8 cut(s)	17, 20, 103, 106, 124, 933, 975, 2017
BseSI	GKGCMC	3 cut(s)	375, 1151, 2122
BseXI	GCAGC	5 cut(s)	427, 991, 1113, 1345, 1748
BseYI	CCCAGC	1 cut(s)	1904
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	4 cut(s)	237, 341, 1373, 2529
BshFI	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
BshTI	ACCGGT	2 cut(s)	567, 1862
BsiHKAI	GWGCWC	2 cut(s)	375, 2122
BsiHKCI	CYCGRG	2 cut(s)	631, 2193
BsiSI	CCGG	5 cut(s)	315, 383, 568, 947, 1863
BslFI	GGGAC	6 cut(s)	285, 339, 1052, 2463, 2501, 2513
BslI	CCNNNNNNNGG	8 cut(s)	266, 382, 469, 511, 637, 827, 1520, 2195
BsmAI	GTCTC	5 cut(s)	589, 1114, 1401, 1753, 2205
BsmFI	GGGAC	6 cut(s)	285, 339, 1052, 2463, 2501, 2513
BsnI	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
Bso31I	GGTCTC	2 cut(s)	1401, 2205
BsoBI	CYCGRG	2 cut(s)	631, 2193
Bsp119I	TTCGAA	2 cut(s)	273, 662
Bsp1286I	GDGCHC	4 cut(s)	375, 1151, 1911, 2122
BspANI	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
BspCNI	CTCAG	4 cut(s)	45, 165, 1288, 1763
BspFNI	CGCG	4 cut(s)	237, 341, 1373, 2529
BspLI	GGNNCC	5 cut(s)	301, 327, 1377, 2286, 2451
BspMAI	CTGCAG	2 cut(s)	719, 1098
BspPI	GGATC	8 cut(s)	217, 812, 838, 923, 1370, 1383, 1642, 1944
BspT104I	TTCGAA	2 cut(s)	273, 662
BspTNI	GGTCTC	2 cut(s)	1401, 2205
BsrBI	CCGCTC	2 cut(s)	146, 195
BsrFI	RCCGGY	3 cut(s)	314, 567, 1862
BsrI	ACTGG	2 cut(s)	1046, 1379
BssAI	RCCGGY	3 cut(s)	314, 567, 1862
BssECI	CCNNGG	8 cut(s)	339, 377, 504, 505, 1262, 1407, 2194, 2422
BssNI	GRCGYC	2 cut(s)	177, 1432
BssSI	CACGAG	2 cut(s)	2202, 2364
BssT1I	CCWWGG	1 cut(s)	1262
Bst2BI	CACGAG	2 cut(s)	2202, 2364
Bst2UI	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
Bst4CI	ACNGT	4 cut(s)	877, 1652, 2108, 2423
Bst6I	CTCTTC	3 cut(s)	89, 664, 2138
BstACI	GRCGYC	2 cut(s)	177, 1432
BstAPI	GCANNNNNTGC	1 cut(s)	1355
BstBI	TTCGAA	2 cut(s)	273, 662
BstC8I	GCNNGC	7 cut(s)	148, 316, 339, 1094, 1208, 1677, 1681
BstDEI	CTNAG	5 cut(s)	32, 152, 1053, 1296, 1750
BstDSI	CCRYGG	3 cut(s)	339, 377, 2422
BstF5I	GGATG	5 cut(s)	632, 772, 991, 1278, 1930
BstFNI	CGCG	4 cut(s)	237, 341, 1373, 2529
BstH2I	RGCGCY	1 cut(s)	1213
BstHHI	GCGC	2 cut(s)	237, 1212
BstMAI	GTCTC	5 cut(s)	589, 1114, 1401, 1753, 2205
BstMWI	GCNNNNNNNGC	7 cut(s)	379, 415, 1056, 1155, 1249, 1307, 1355
BstNI	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
BstNSI	RCATGY	3 cut(s)	1191, 1243, 1679
BstSCI	CCNGG	5 cut(s)	504, 1132, 1310, 1407, 1513
BstSFI	CTRYAG	3 cut(s)	715, 876, 1094
BstSLI	GKGCMC	3 cut(s)	375, 1151, 2122
BstUI	CGCG	4 cut(s)	237, 341, 1373, 2529
BstV1I	GCAGC	5 cut(s)	427, 991, 1113, 1345, 1748
BstV2I	GAAGAC	2 cut(s)	154, 1791
BstX2I	RGATCY	6 cut(s)	222, 928, 1375, 1634, 1949, 2348
BstXI	CCANNNNNNTGG	1 cut(s)	1140
BstYI	RGATCY	6 cut(s)	222, 928, 1375, 1634, 1949, 2348
Bsu36I	CCTNAGG	2 cut(s)	32, 1296
BsuRI	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
BtgI	CCRYGG	3 cut(s)	339, 377, 2422
BtgZI	GCGATG	2 cut(s)	333, 2184
BtrI	CACGTC	1 cut(s)	1013
BtsCI	GGATG	5 cut(s)	632, 772, 991, 1278, 1930
BtsI	GCAGTG	1 cut(s)	1103
BtsIMutI	CAGTG	2 cut(s)	1103, 1657
Cac8I	GCNNGC	7 cut(s)	148, 316, 339, 1094, 1208, 1677, 1681
CfoI	GCGC	2 cut(s)	237, 1212
Cfr10I	RCCGGY	3 cut(s)	314, 567, 1862
Cfr42I	CCGCGG	1 cut(s)	342
CseI	GACGC	3 cut(s)	185, 1100, 2535
Csp6I	GTAC	4 cut(s)	16, 636, 836, 1369
CspAI	ACCGGT	2 cut(s)	567, 1862
CviAII	CATG	5 cut(s)	494, 1188, 1240, 1676, 1820
CviQI	GTAC	4 cut(s)	16, 636, 836, 1369
DdeI	CTNAG	5 cut(s)	32, 152, 1053, 1296, 1750
DraI	TTTAAA	2 cut(s)	1167, 2128
DrdI	GACNNNNNNGTC	1 cut(s)	458
DriI	GACNNNNNGTC	1 cut(s)	1336
DseDI	GACNNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	3 cut(s)	89, 664, 2138
Eam1105I	GACNNNNNGTC	1 cut(s)	1336
EarI	CTCTTC	3 cut(s)	89, 664, 2138
EciI	GGCGGA	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	1262
Eco147I	AGGCCT	1 cut(s)	1301
Eco24I	GRGCYC	1 cut(s)	1911
Eco31I	GGTCTC	2 cut(s)	1401, 2205
Eco47I	GGWCC	9 cut(s)	205, 299, 326, 460, 565, 585, 1658, 1865, 2450
Eco81I	CCTNAGG	2 cut(s)	32, 1296
Eco88I	CYCGRG	2 cut(s)	631, 2193
EcoO109I	RGGNCCY	3 cut(s)	585, 2285, 2450
EcoRI	GAATTC	1 cut(s)	727
EcoRII	CCWGG	5 cut(s)	504, 1132, 1310, 1407, 1513
EcoT14I	CCWWGG	1 cut(s)	1262
EcoT22I	ATGCAT	1 cut(s)	1728
EcoT38I	GRGCYC	1 cut(s)	1911
ErhI	CCWWGG	1 cut(s)	1262
FaeI	CATG	5 cut(s)	497, 1191, 1243, 1679, 1823
FalI	AAGNNNNNCTT	4 cut(s)	1046, 1078, 1383, 1415
FaqI	GGGAC	6 cut(s)	285, 339, 1052, 2463, 2501, 2513
FatI	CATG	5 cut(s)	493, 1187, 1239, 1675, 1819
FauI	CCCGC	2 cut(s)	84, 346
FbaI	TGATCA	1 cut(s)	951
FblI	GTMKAC	2 cut(s)	937, 2524
Fnu4HI	GCNGC	9 cut(s)	309, 312, 342, 345, 416, 980, 1127, 1359, 1737
FokI	GGATG	5 cut(s)	639, 779, 978, 1285, 1937
FriOI	GRGCYC	1 cut(s)	1911
Fsp4HI	GCNGC	9 cut(s)	309, 312, 342, 345, 416, 980, 1127, 1359, 1737
FspBI	CTAG	5 cut(s)	933, 1263, 1269, 1833, 1934
GlaI	GCGC	2 cut(s)	236, 1211
GluI	GCNGC	9 cut(s)	309, 312, 342, 345, 416, 980, 1127, 1359, 1737
GsaI	CCCAGC	1 cut(s)	1908
HaeII	RGCGCY	1 cut(s)	1213
HaeIII	GGCC	5 cut(s)	382, 1260, 1294, 1301, 2287
HapII	CCGG	5 cut(s)	315, 383, 568, 947, 1863
HgaI	GACGC	3 cut(s)	185, 1100, 2535
HhaI	GCGC	2 cut(s)	237, 1212
Hin1I	GRCGYC	2 cut(s)	177, 1432
Hin1II	CATG	5 cut(s)	497, 1191, 1243, 1679, 1823
Hin6I	GCGC	2 cut(s)	235, 1210
HinP1I	GCGC	2 cut(s)	235, 1210
HincII	GTYRAC	1 cut(s)	2525
HindII	GTYRAC	1 cut(s)	2525
HindIII	AAGCTT	1 cut(s)	1882
HpaII	CCGG	5 cut(s)	315, 383, 568, 947, 1863
HphI	GGTGA	3 cut(s)	361, 961, 2345
Hpy166II	GTNNAC	5 cut(s)	373, 938, 1964, 2120, 2525
Hpy8I	GTNNAC	5 cut(s)	373, 938, 1964, 2120, 2525
Hpy99I	CGWCG	4 cut(s)	179, 1434, 1734, 2529
HpyAV	CCTTC	9 cut(s)	112, 349, 436, 556, 640, 689, 1385, 1649, 2456
HpyCH4III	ACNGT	4 cut(s)	877, 1652, 2108, 2423
HpyCH4IV	ACGT	3 cut(s)	1012, 1255, 1432
HpyF10VI	GCNNNNNNNGC	7 cut(s)	379, 415, 1056, 1155, 1249, 1307, 1355
HpyF3I	CTNAG	5 cut(s)	32, 152, 1053, 1296, 1750
HpySE526I	ACGT	3 cut(s)	1012, 1255, 1432
Hsp92I	GRCGYC	2 cut(s)	177, 1432
Hsp92II	CATG	5 cut(s)	497, 1191, 1243, 1679, 1823
HspAI	GCGC	2 cut(s)	235, 1210
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	951
KspI	CCGCGG	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	5 cut(s)	427, 991, 1113, 1345, 1748
LweI	GCATC	5 cut(s)	469, 617, 1093, 1486, 1735
MaeI	CTAG	5 cut(s)	933, 1263, 1269, 1833, 1934
MaeII	ACGT	3 cut(s)	1012, 1255, 1432
MaeIII	GTNAC	6 cut(s)	846, 1381, 2252, 2333, 2417, 2507
MbiI	CCGCTC	2 cut(s)	146, 195
MfeI	CAATTG	1 cut(s)	1611
MflI	RGATCY	6 cut(s)	222, 928, 1375, 1634, 1949, 2348
MhlI	GDGCHC	4 cut(s)	375, 1151, 1911, 2122
MluI	ACGCGT	1 cut(s)	2527
MlyI	GAGTC	1 cut(s)	1346
MmeI	TCCRAC	3 cut(s)	222, 988, 1551
Mph1103I	ATGCAT	1 cut(s)	1728
MreI	CGCCGGCG	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	314
MroXI	GAANNNNTTC	2 cut(s)	1425, 2162
MslI	CAYNNNNRTG	2 cut(s)	690, 1025
MspA1I	CMGCKG	3 cut(s)	341, 1126, 2136
MspI	CCGG	5 cut(s)	315, 383, 568, 947, 1863
MspR9I	CCNGG	5 cut(s)	506, 1134, 1312, 1409, 1515
MunI	CAATTG	1 cut(s)	1611
MvaI	CCWGG	5 cut(s)	506, 1134, 1312, 1409, 1515
MvnI	CGCG	4 cut(s)	237, 341, 1373, 2529
MwoI	GCNNNNNNNGC	7 cut(s)	379, 415, 1056, 1155, 1249, 1307, 1355
NaeI	GCCGGC	1 cut(s)	316
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	5 cut(s)	497, 1191, 1243, 1679, 1823
NlaIV	GGNNCC	5 cut(s)	301, 327, 1377, 2286, 2451
NmuCI	GTSAC	2 cut(s)	846, 2333
NsiI	ATGCAT	1 cut(s)	1728
NspI	RCATGY	3 cut(s)	1191, 1243, 1679
NspV	TTCGAA	2 cut(s)	273, 662
PaeI	GCATGC	1 cut(s)	1679
PasI	CCCWGGG	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	1301
PcsI	WCGNNNNNNNCGW	3 cut(s)	171, 180, 1009
PdiI	GCCGGC	1 cut(s)	316
PdmI	GAANNNNTTC	2 cut(s)	1425, 2162
PfeI	GAWTC	9 cut(s)	239, 290, 500, 1288, 1589, 1640, 1829, 2030, 2048
PflMI	CCANNNNNTGG	2 cut(s)	469, 511
PfoI	TCCNGGA	1 cut(s)	1132
PinAI	ACCGGT	2 cut(s)	567, 1862
PkrI	GCNGC	9 cut(s)	310, 313, 343, 346, 417, 981, 1128, 1360, 1738
PleI	GAGTC	1 cut(s)	1345
PpsI	GAGTC	1 cut(s)	1345
PpuMI	RGGWCCY	2 cut(s)	585, 2450
Psp5II	RGGWCCY	2 cut(s)	585, 2450
Psp6I	CCWGG	5 cut(s)	504, 1132, 1310, 1407, 1513
PspFI	CCCAGC	1 cut(s)	1904
PspGI	CCWGG	5 cut(s)	504, 1132, 1310, 1407, 1513
PspN4I	GGNNCC	5 cut(s)	301, 327, 1377, 2286, 2451
PspPPI	RGGWCCY	2 cut(s)	585, 2450
PstI	CTGCAG	2 cut(s)	719, 1098
PsuI	RGATCY	6 cut(s)	222, 928, 1375, 1634, 1949, 2348
PvuII	CAGCTG	1 cut(s)	1126
RsaI	GTAC	4 cut(s)	17, 637, 837, 1370
RsaNI	GTAC	4 cut(s)	16, 636, 836, 1369
RseI	CAYNNNNRTG	2 cut(s)	690, 1025
SacII	CCGCGG	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	2523
SatI	GCNGC	9 cut(s)	309, 312, 342, 345, 416, 980, 1127, 1359, 1737
SchI	GAGTC	1 cut(s)	1346
ScrFI	CCNGG	5 cut(s)	506, 1134, 1312, 1409, 1515
SduI	GDGCHC	4 cut(s)	375, 1151, 1911, 2122
SfaNI	GCATC	5 cut(s)	469, 617, 1093, 1486, 1735
SfcI	CTRYAG	3 cut(s)	715, 876, 1094
Sfr303I	CCGCGG	1 cut(s)	342
SfuI	TTCGAA	2 cut(s)	273, 662
SgrAI	CRCCGGYG	1 cut(s)	314
SgrBI	CCGCGG	1 cut(s)	342
SinI	GGWCC	9 cut(s)	205, 299, 326, 460, 565, 585, 1658, 1865, 2450
SmiI	ATTTAAAT	1 cut(s)	2128
SmiMI	CAYNNNNRTG	2 cut(s)	690, 1025
SmlI	CTYRAG	1 cut(s)	1413
SmoI	CTYRAG	1 cut(s)	1413
SphI	GCATGC	1 cut(s)	1679
SseBI	AGGCCT	1 cut(s)	1301
SspI	AATATT	2 cut(s)	1490, 1945
SspMI	CTAG	5 cut(s)	933, 1263, 1269, 1833, 1934
StuI	AGGCCT	1 cut(s)	1301
StyD4I	CCNGG	5 cut(s)	504, 1132, 1310, 1407, 1513
StyI	CCWWGG	1 cut(s)	1262
SwaI	ATTTAAAT	1 cut(s)	2128
TaaI	ACNGT	4 cut(s)	877, 1652, 2108, 2423
TaiI	ACGT	3 cut(s)	1015, 1258, 1435
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	4 cut(s)	311, 314, 344, 347
TfiI	GAWTC	9 cut(s)	239, 290, 500, 1288, 1589, 1640, 1829, 2030, 2048
TscAI	CASTG	2 cut(s)	1103, 1657
TseFI	GTSAC	2 cut(s)	846, 2333
TseI	GCWGC	5 cut(s)	415, 979, 1126, 1358, 1736
Tsp45I	GTSAC	2 cut(s)	846, 2333
TspGWI	ACGGA	3 cut(s)	653, 790, 872
TspRI	CASTG	2 cut(s)	1103, 1657
Van91I	CCANNNNNTGG	2 cut(s)	469, 511
VneI	GTGCAC	2 cut(s)	371, 2118
VpaK11BI	GGWCC	9 cut(s)	205, 299, 326, 460, 565, 585, 1658, 1865, 2450
XapI	RAATTY	8 cut(s)	609, 727, 1069, 1315, 1423, 1774, 2011, 2275
XbaI	TCTAGA	2 cut(s)	1832, 1933
XceI	RCATGY	3 cut(s)	1191, 1243, 1679
XmaJI	CCTAGG	1 cut(s)	1262
XmiI	GTMKAC	2 cut(s)	937, 2524
XmnI	GAANNNNTTC	2 cut(s)	1425, 2162
XspI	CTAG	5 cut(s)	933, 1263, 1269, 1833, 1934
ZraI	GACGTC	1 cut(s)	1433
Zsp2I	ATGCAT	1 cut(s)	1728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.