Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Reverse (-)

10119441 .. 10130453

Gene Structure 11013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G005240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGGATTTGATGCCTCTGAAATCCATGATGATTCCCAGGGTTTGGATTTCAGGGATTTCAAGGCTTTAAGGGAGCACACCCACCTTGATGAAGGAGATGTTTATAGTTCCTGCAGTTTAAGGAATTCCTGTGAAAGAGCATATCTGATTACTAACAAAGAGGATGAGGCGCGGACCATTGATATAATGCGTGTTTTACTGACTTATGGCTTTGATCCTATAAATGGATCAGTACAAAACAAGTCACTTCTGAAACAAAAATCCGTTAAAAATGTAGTCCGTAAGTTGCTTCATCAGGTTGTCAAGCTGAGTTCAGTTCCAATAGATCCTAGTCTACCTCCTCCGGTGATCAAAAAGCCAACCCCAAAAGTGAAGCCGCCTCCTCCCCCTCCAAGAAAACGAGTTGGGCGCGATGACATTGTGATGAAAAAAGGGGACTGCCTATGCTTAAAGTGGGACTTCATGAATTTTGCCAAGAACAGCCTGTGCCTGCAGTCTGATGCCAAGCGTCCAAAGAGACAGCTGCTTCCAGGAGAATGGGAATGCCCAGAGTGCAACTTTTTAAATTACAGGAGAAATATGGCATGTTTTCATTGTGATTGCAAGCGCCCACCTGACGAATATATTGAGAACAACATGCAAGAAAAAAAACTAATGCCTGGAATTTTGATTTTGATGACAATGAGTCGGATGAGAGTGTCAAGGGTTGACGATGAAGAACATTCTGATGCTGATGTTATTAAGCCAGGCAGAGGGTTTGATGATTTTGGTGATGAAGATGATGATATTGACAATTACGAATCTGAATCGGAAAACAGTGAAGGTCCAGACAATAATCTGCATGCTCGCAAAACAAACTCTCCATCTCACAATAAGCCATCTAATAAGTCTATGCATCGACGGGCAGCTAGTCCATCAAAGAGAGTAAGCTTTGTATCTGATGATGAAGCTGGGCTCTACTCTGATATAAGTAAACTGAACAAATTGGGTTCTGGGAGAAAAGACTTTCAGAGGAGAAGAAATTTTGATAGTGATGATGATTCTGTGTCTGGGTCTCGTGATAACAGAGGATTTCGAGGGAATGATTTTGATGGGCAGAGAATGAGTAACAGAGGTGTTGATAGGCAGAATTTTAAGGGGCCTAAAGGGAAAAAAGAAAGATTTGGAAATGGTGGTAGGAGAAACTCTTTTGGTGACGATTTTGATAGATCTAAACAAGTATCTCGTGGTAATAACAGAGGATTTCGGGAAAACTACTTTGATGGGCACAGAATGAGTAACCAAGGATTTGGAAAGCAGCAGCATGAAAGATTTAACAATGATAGGGATAAGGACAGGGACTTTGGTAACTTCAGCAATAGTCGACGTGTTATTGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

460

Amino Acids

52.9

Weight (kDa)

8.99

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccI	GTMKAC	2 cut(s)	334, 1363
AccII	CGCG	2 cut(s)	172, 411
AciI	CCGC	2 cut(s)	172, 377
AclWI	GGATC	3 cut(s)	209, 235, 320
AcsI	RAATTY	5 cut(s)	124, 466, 663, 1021, 1129
AcuI	CTGAAG	1 cut(s)	1336
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	43, 224, 752
AflIII	ACRYGT	1 cut(s)	1366
AgsI	TTSAA	2 cut(s)	61, 1376
AhdI	GACNNNNNGTC	1 cut(s)	684
AjiI	CACGTC	1 cut(s)	1367
AjnI	CCWGG	4 cut(s)	36, 529, 658, 745
AluBI	AGCT	5 cut(s)	307, 523, 908, 930, 950
AluI	AGCT	5 cut(s)	307, 523, 908, 930, 950
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	511, 1059
AlwI	GGATC	3 cut(s)	209, 235, 320
AoxI	GGCC	1 cut(s)	1139
ApeKI	GCWGC	4 cut(s)	523, 905, 1297, 1300
ApoI	RAATTY	5 cut(s)	124, 466, 663, 1021, 1129
ArsI	GACNNNNNNTTYG	2 cut(s)	1325, 1357
AspLEI	GCGC	3 cut(s)	172, 411, 609
AspS9I	GGNCC	3 cut(s)	174, 824, 1139
AsuHPI	GGTGA	3 cut(s)	358, 782, 1205
AvaII	GGWCC	2 cut(s)	174, 824
BaeGI	GKGCMC	1 cut(s)	1269
BanII	GRGCYC	1 cut(s)	957
BauI	CACGAG	2 cut(s)	1056, 1224
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	510, 917, 1309, 1312
BccI	CCATC	5 cut(s)	871, 886, 922, 1085, 1256
BciT130I	CCWGG	4 cut(s)	38, 531, 660, 747
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	511, 1059
BfaI	CTAG	2 cut(s)	330, 909
BfmI	CTRYAG	2 cut(s)	112, 491
BfoI	RGCGCY	1 cut(s)	610
BglII	AGATCT	1 cut(s)	1208
BisI	GCNGC	5 cut(s)	377, 524, 906, 1298, 1301
BlsI	GCNGC	5 cut(s)	378, 525, 907, 1299, 1302
Bme1390I	CCNGG	4 cut(s)	38, 531, 660, 747
Bme18I	GGWCC	2 cut(s)	174, 824
BmeRI	GACNNNNNGTC	1 cut(s)	684
BmgBI	CACGTC	1 cut(s)	1367
BmgT120I	GGNCC	3 cut(s)	174, 824, 1139
BmiI	GGNNCC	1 cut(s)	1140
BmrFI	CCNGG	4 cut(s)	38, 531, 660, 747
BmsI	GCATC	3 cut(s)	490, 718, 904
BsaI	GGTCTC	1 cut(s)	1059
BsaJI	CCNNGG	3 cut(s)	36, 37, 1282
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 224, 752
BseBI	CCWGG	4 cut(s)	38, 531, 660, 747
BseDI	CCNNGG	3 cut(s)	36, 37, 1282
BseGI	GGATG	2 cut(s)	169, 696
BseLI	CCNNNNNNNGG	3 cut(s)	43, 224, 752
BseMII	CTCAG	1 cut(s)	299
BseRI	GAGGAG	3 cut(s)	330, 372, 1027
BseSI	GKGCMC	1 cut(s)	1269
BseXI	GCAGC	4 cut(s)	510, 917, 1309, 1312
BseYI	CCCAGC	1 cut(s)	950
Bsh1236I	CGCG	2 cut(s)	172, 411
BshFI	GGCC	1 cut(s)	1141
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	3 cut(s)	449, 470, 1352
BslI	CCNNNNNNNGG	3 cut(s)	43, 224, 752
BsmAI	GTCTC	2 cut(s)	511, 1059
BsmFI	GGGAC	3 cut(s)	449, 470, 1352
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	1141
Bso31I	GGTCTC	1 cut(s)	1059
Bsp1286I	GDGCHC	3 cut(s)	78, 957, 1269
Bsp143I	GATC	5 cut(s)	214, 227, 325, 348, 1208
BspACI	CCGC	2 cut(s)	172, 377
BspANI	GGCC	1 cut(s)	1141
BspCNI	CTCAG	1 cut(s)	300
BspFNI	CGCG	2 cut(s)	172, 411
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	1140
BspMAI	CTGCAG	2 cut(s)	116, 495
BspPI	GGATC	3 cut(s)	209, 235, 320
BspTNI	GGTCTC	1 cut(s)	1059
BssECI	CCNNGG	3 cut(s)	36, 37, 1282
BssMI	GATC	5 cut(s)	214, 227, 325, 348, 1208
BssSI	CACGAG	2 cut(s)	1056, 1224
BssT1I	CCWWGG	1 cut(s)	1282
Bst2BI	CACGAG	2 cut(s)	1056, 1224
Bst2UI	CCWGG	4 cut(s)	38, 531, 660, 747
Bst4CI	ACNGT	1 cut(s)	818
BstC8I	GCNNGC	4 cut(s)	491, 605, 843, 847
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	169, 696
BstFNI	CGCG	2 cut(s)	172, 411
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	3 cut(s)	172, 411, 609
BstKTI	GATC	5 cut(s)	217, 230, 328, 351, 1211
BstMAI	GTCTC	2 cut(s)	511, 1059
BstMBI	GATC	5 cut(s)	214, 227, 325, 348, 1208
BstMWI	GCNNNNNNNGC	1 cut(s)	552
BstNI	CCWGG	4 cut(s)	38, 531, 660, 747
BstNSI	RCATGY	3 cut(s)	588, 640, 845
BstSCI	CCNGG	4 cut(s)	36, 529, 658, 745
BstSFI	CTRYAG	2 cut(s)	112, 491
BstSLI	GKGCMC	1 cut(s)	1269
BstUI	CGCG	2 cut(s)	172, 411
BstV1I	GCAGC	4 cut(s)	510, 917, 1309, 1312
BstX2I	RGATCY	2 cut(s)	325, 1208
BstXI	CCANNNNNNTGG	2 cut(s)	537, 1289
BstYI	RGATCY	2 cut(s)	325, 1208
BsuRI	GGCC	1 cut(s)	1141
BtgZI	GCGATG	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	1367
BtsCI	GGATG	2 cut(s)	169, 696
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	4 cut(s)	491, 605, 843, 847
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	3 cut(s)	172, 411, 609
Cfr13I	GGNCC	3 cut(s)	174, 824, 1139
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	6 cut(s)	26, 463, 585, 637, 842, 1304
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	5 cut(s)	216, 229, 327, 350, 1210
DpnII	GATC	5 cut(s)	214, 227, 325, 348, 1208
DraI	TTTAAA	1 cut(s)	564
DriI	GACNNNNNGTC	1 cut(s)	684
Eam1105I	GACNNNNNGTC	1 cut(s)	684
Eco130I	CCWWGG	1 cut(s)	1282
Eco24I	GRGCYC	1 cut(s)	957
Eco31I	GGTCTC	1 cut(s)	1059
Eco47I	GGWCC	2 cut(s)	174, 824
Eco57I	CTGAAG	1 cut(s)	1336
EcoO109I	RGGNCCY	1 cut(s)	1139
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	4 cut(s)	36, 529, 658, 745
EcoT14I	CCWWGG	1 cut(s)	1282
EcoT22I	ATGCAT	1 cut(s)	897
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	1 cut(s)	1282
FaeI	CATG	6 cut(s)	29, 466, 588, 640, 845, 1307
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	3 cut(s)	449, 470, 1352
FatI	CATG	6 cut(s)	25, 462, 584, 636, 841, 1303
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	2 cut(s)	334, 1363
Fnu4HI	GCNGC	5 cut(s)	377, 524, 906, 1298, 1301
FokI	GGATG	2 cut(s)	176, 703
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	5 cut(s)	377, 524, 906, 1298, 1301
FspBI	CTAG	2 cut(s)	330, 909
GlaI	GCGC	3 cut(s)	171, 410, 608
GluI	GCNGC	5 cut(s)	377, 524, 906, 1298, 1301
GsaI	CCCAGC	1 cut(s)	954
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	1 cut(s)	1141
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	3 cut(s)	172, 411, 609
Hin1II	CATG	6 cut(s)	29, 466, 588, 640, 845, 1307
Hin6I	GCGC	3 cut(s)	170, 409, 607
HinP1I	GCGC	3 cut(s)	170, 409, 607
HincII	GTYRAC	2 cut(s)	709, 1364
HindII	GTYRAC	2 cut(s)	709, 1364
HindIII	AAGCTT	1 cut(s)	928
HinfI	GANTC	5 cut(s)	32, 685, 800, 806, 1040
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	3 cut(s)	358, 782, 1205
Hpy166II	GTNNAC	4 cut(s)	335, 709, 974, 1364
Hpy188III	TCNNGA	4 cut(s)	463, 827, 1058, 1247
Hpy8I	GTNNAC	4 cut(s)	335, 709, 974, 1364
Hpy99I	CGWCG	2 cut(s)	903, 1368
HpyAV	CCTTC	2 cut(s)	86, 815
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4IV	ACGT	1 cut(s)	1366
HpyCH4V	TGCA	7 cut(s)	114, 493, 555, 603, 640, 841, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	552
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	1366
Hsp92II	CATG	6 cut(s)	29, 466, 588, 640, 845, 1307
HspAI	GCGC	3 cut(s)	170, 409, 607
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	5 cut(s)	214, 227, 325, 348, 1208
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	4 cut(s)	510, 917, 1309, 1312
LweI	GCATC	3 cut(s)	490, 718, 904
MaeI	CTAG	2 cut(s)	330, 909
MaeII	ACGT	1 cut(s)	1366
MaeIII	GTNAC	5 cut(s)	243, 1106, 1193, 1277, 1346
MalI	GATC	5 cut(s)	216, 229, 327, 350, 1210
MboI	GATC	5 cut(s)	214, 227, 325, 348, 1208
MboII	GAAGA	3 cut(s)	728, 788, 1029
MflI	RGATCY	2 cut(s)	325, 1208
MhlI	GDGCHC	3 cut(s)	78, 957, 1269
MluCI	AATT	8 cut(s)	124, 466, 565, 663, 793, 983, 1021, 1129
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	668
Mph1103I	ATGCAT	1 cut(s)	897
MseI	TTAA	8 cut(s)	68, 119, 267, 449, 563, 741, 1134, 1314
MslI	CAYNNNNRTG	3 cut(s)	87, 422, 726
MspA1I	CMGCKG	1 cut(s)	523
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	4 cut(s)	38, 531, 660, 747
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	4 cut(s)	38, 531, 660, 747
MvnI	CGCG	2 cut(s)	172, 411
MwoI	GCNNNNNNNGC	1 cut(s)	552
NdeII	GATC	5 cut(s)	214, 227, 325, 348, 1208
NlaIII	CATG	6 cut(s)	29, 466, 588, 640, 845, 1307
NlaIV	GGNNCC	1 cut(s)	1140
NmuCI	GTSAC	2 cut(s)	243, 1193
NsiI	ATGCAT	1 cut(s)	897
NspI	RCATGY	3 cut(s)	588, 640, 845
PaeI	GCATGC	1 cut(s)	845
PagI	TCATGA	1 cut(s)	462
PasI	CCCWGGG	1 cut(s)	37
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	4 cut(s)	32, 800, 806, 1040
PflMI	CCANNNNNTGG	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	5 cut(s)	378, 525, 907, 1299, 1302
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp6I	CCWGG	4 cut(s)	36, 529, 658, 745
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	4 cut(s)	36, 529, 658, 745
PspN4I	GGNNCC	1 cut(s)	1140
PspPI	GGNCC	3 cut(s)	174, 824, 1139
PstI	CTGCAG	2 cut(s)	116, 495
PsuI	RGATCY	2 cut(s)	325, 1208
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	3 cut(s)	87, 422, 726
SalI	GTCGAC	1 cut(s)	1362
SaqAI	TTAA	8 cut(s)	68, 119, 267, 449, 563, 741, 1134, 1314
SatI	GCNGC	5 cut(s)	377, 524, 906, 1298, 1301
Sau3AI	GATC	5 cut(s)	214, 227, 325, 348, 1208
Sau96I	GGNCC	3 cut(s)	174, 824, 1139
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	4 cut(s)	38, 531, 660, 747
SduI	GDGCHC	3 cut(s)	78, 957, 1269
SfaNI	GCATC	3 cut(s)	490, 718, 904
SfcI	CTRYAG	2 cut(s)	112, 491
SinI	GGWCC	2 cut(s)	174, 824
SmiMI	CAYNNNNRTG	3 cut(s)	87, 422, 726
SphI	GCATGC	1 cut(s)	845
Sse9I	AATT	8 cut(s)	124, 466, 565, 663, 793, 983, 1021, 1129
SsiI	CCGC	2 cut(s)	172, 377
SspMI	CTAG	2 cut(s)	330, 909
StyD4I	CCNGG	4 cut(s)	36, 529, 658, 745
StyI	CCWWGG	1 cut(s)	1282
TaaI	ACNGT	1 cut(s)	818
TaiI	ACGT	1 cut(s)	1369
TaqI	TCGA	3 cut(s)	898, 1075, 1363
TasI	AATT	8 cut(s)	124, 466, 565, 663, 793, 983, 1021, 1129
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	4 cut(s)	32, 800, 806, 1040
Tru1I	TTAA	8 cut(s)	68, 119, 267, 449, 563, 741, 1134, 1314
Tru9I	TTAA	8 cut(s)	68, 119, 267, 449, 563, 741, 1134, 1314
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	2 cut(s)	243, 1193
TseI	GCWGC	4 cut(s)	523, 905, 1297, 1300
Tsp45I	GTSAC	2 cut(s)	243, 1193
TspGWI	ACGGA	2 cut(s)	253, 269
TspRI	CASTG	1 cut(s)	823
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	174, 824
XapI	RAATTY	5 cut(s)	124, 466, 663, 1021, 1129
XceI	RCATGY	3 cut(s)	588, 640, 845
XmiI	GTMKAC	2 cut(s)	334, 1363
XspI	CTAG	2 cut(s)	330, 909
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.