Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002502.1

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1197

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002502.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggcacaatctccgtactctctcctcctcctcaggcgtttgatctctcgctattccttaaaccccaaaccctctccgcctctcttctctctcctaaaacccttctctacctcctcctcgaacccaaacccttcctctctctccgctcgcctcagcttcgtcttcgaccaaatcgacgccattgagaaagaccgctccgacaaggaccaaaccctccaaaagatccgagcttggcgcgaatccaaaaacccccaatccccagaattagggttcgaaaatgcccgcctcgattcgattggtccctccgccgacgtgggaccggagaagcccgcggcggcggtgaagaaggaggtggaggtggtgcacccgtggccggagtggattgaactgatggagaggctggtgcagcagaactactttgaccataggaggaaggacgaggacagaatggtccaagaaatgggctttgatgcctctgaaatccatgatgattcccagggtttggatctcagggatttcaaggctgttcatactgcctgtcttaatttcgggaaggaccggtttgatattttcaggtccttgtcgagacaggatattcaaattttggtgggttttggatgcccgagtacggacaagaaggtggttttctcttcgaagctgttaaggaagcacacccaccttgatgaaggagat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

231

Amino Acids

26.4

Weight (kDa)

6.32

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
AccB7I	CCANNNNNTGG	2 cut(s)	460, 502
AccBSI	CCGCTC	2 cut(s)	146, 195
AccII	CGCG	2 cut(s)	237, 332
AciI	CCGC	9 cut(s)	77, 144, 193, 283, 306, 330, 332, 335, 338
AclWI	GGATC	2 cut(s)	217, 513
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	17, 628
AfiI	CCNNNNNNNGG	5 cut(s)	266, 373, 460, 502, 628
AgeI	ACCGGT	1 cut(s)	558
AgsI	TTSAA	3 cut(s)	386, 520, 599
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	3 cut(s)	156, 230, 658
AluI	AGCT	3 cut(s)	156, 230, 658
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	580
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	217, 513
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	600
AsiGI	ACCGGT	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	6 cut(s)	205, 299, 317, 451, 556, 576
AsuHPI	GGTGA	1 cut(s)	352
AsuII	TTCGAA	2 cut(s)	273, 653
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	6 cut(s)	205, 299, 317, 451, 556, 576
AxyI	CCTNAGG	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	580
BisI	GCNGC	3 cut(s)	333, 336, 407
BlsI	GCNGC	3 cut(s)	334, 337, 408
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	6 cut(s)	205, 299, 317, 451, 556, 576
BmeT110I	CYCGRG	1 cut(s)	622
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	6 cut(s)	205, 299, 317, 451, 556, 576
BmiI	GGNNCC	2 cut(s)	301, 318
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	460, 608
BpiI	GAAGAC	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	2 cut(s)	273, 653
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	330, 368, 495, 496
BsaWI	WCCGGW	2 cut(s)	319, 558
Bsc4I	CCNNNNNNNGG	5 cut(s)	266, 373, 460, 502, 628
Bse118I	RCCGGY	1 cut(s)	558
Bse21I	CCTNAGG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	4 cut(s)	330, 368, 495, 496
BseGI	GGATG	1 cut(s)	623
BseLI	CCNNNNNNNGG	5 cut(s)	266, 373, 460, 502, 628
BseMII	CTCAG	3 cut(s)	46, 166, 523
BseRI	GAGGAG	5 cut(s)	14, 17, 20, 103, 106
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	237, 332
BshFI	GGCC	1 cut(s)	373
BshTI	ACCGGT	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	3 cut(s)	320, 374, 559
BslFI	GGGAC	2 cut(s)	285, 330
BslI	CCNNNNNNNGG	5 cut(s)	266, 373, 460, 502, 628
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	2 cut(s)	285, 330
BsnI	GGCC	1 cut(s)	373
BsoBI	CYCGRG	1 cut(s)	622
Bsp119I	TTCGAA	2 cut(s)	273, 653
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	42, 222, 505
BspACI	CCGC	9 cut(s)	77, 144, 193, 283, 306, 330, 332, 335, 338
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	3 cut(s)	45, 165, 522
BspFNI	CGCG	2 cut(s)	237, 332
BspLI	GGNNCC	2 cut(s)	301, 318
BspPI	GGATC	2 cut(s)	217, 513
BspT104I	TTCGAA	2 cut(s)	273, 653
BsrBI	CCGCTC	2 cut(s)	146, 195
BsrFI	RCCGGY	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	4 cut(s)	330, 368, 495, 496
BssMI	GATC	3 cut(s)	42, 222, 505
BssNI	GRCGYC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	497
Bst6I	CTCTTC	2 cut(s)	89, 655
BstACI	GRCGYC	1 cut(s)	177
BstBI	TTCGAA	2 cut(s)	273, 653
BstC8I	GCNNGC	3 cut(s)	148, 283, 330
BstDEI	CTNAG	3 cut(s)	32, 152, 509
BstDSI	CCRYGG	2 cut(s)	330, 368
BstF5I	GGATG	1 cut(s)	623
BstFNI	CGCG	2 cut(s)	237, 332
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	3 cut(s)	45, 225, 508
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	3 cut(s)	42, 222, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 406
BstNI	CCWGG	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	366
BstUI	CGCG	2 cut(s)	237, 332
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	222, 505
BstYI	RGATCY	2 cut(s)	222, 505
Bsu36I	CCTNAGG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	373
BtgI	CCRYGG	2 cut(s)	330, 368
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	623
Cac8I	GCNNGC	3 cut(s)	148, 283, 330
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	6 cut(s)	205, 299, 317, 451, 556, 576
Cfr42I	CCGCGG	1 cut(s)	333
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	16, 627
CspAI	ACCGGT	1 cut(s)	558
CviAII	CATG	1 cut(s)	485
CviJI	RGCY	8 cut(s)	156, 230, 328, 373, 400, 465, 524, 658
CviKI_1	RGCY	8 cut(s)	156, 230, 328, 373, 400, 465, 524, 658
CviQI	GTAC	2 cut(s)	16, 627
DdeI	CTNAG	3 cut(s)	32, 152, 509
DpnI	GATC	3 cut(s)	44, 224, 507
DpnII	GATC	3 cut(s)	42, 222, 505
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	371
Eam1104I	CTCTTC	2 cut(s)	89, 655
EarI	CTCTTC	2 cut(s)	89, 655
EciI	GGCGGA	2 cut(s)	66, 295
Eco47I	GGWCC	6 cut(s)	205, 299, 317, 451, 556, 576
Eco81I	CCTNAGG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	495
FaeI	CATG	1 cut(s)	488
FaiI	YATR	3 cut(s)	426, 486, 531
FaqI	GGGAC	2 cut(s)	285, 330
FatI	CATG	1 cut(s)	484
FauI	CCCGC	2 cut(s)	290, 337
Fnu4HI	GCNGC	3 cut(s)	333, 336, 407
FokI	GGATG	1 cut(s)	630
Fsp4HI	GCNGC	3 cut(s)	333, 336, 407
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	333, 336, 407
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	3 cut(s)	320, 374, 559
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	488
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	239, 290, 491
HpaII	CCGG	3 cut(s)	320, 374, 559
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	199, 227, 478
Hpy188III	TCNNGA	2 cut(s)	550, 585
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	2 cut(s)	179, 314
HpyAV	CCTTC	7 cut(s)	112, 141, 340, 427, 547, 631, 680
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	364, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 406
HpyF3I	CTNAG	3 cut(s)	32, 152, 509
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	488
HspAI	GCGC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	42, 222, 505
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	2 cut(s)	460, 608
MaeII	ACGT	1 cut(s)	312
MalI	GATC	3 cut(s)	44, 224, 507
MbiI	CCGCTC	2 cut(s)	146, 195
MboI	GATC	3 cut(s)	42, 222, 505
MboII	GAAGA	4 cut(s)	76, 154, 355, 642
MflI	RGATCY	2 cut(s)	222, 505
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	3 cut(s)	263, 544, 600
MmeI	TCCRAC	1 cut(s)	222
MseI	TTAA	3 cut(s)	59, 543, 662
MslI	CAYNNNNRTG	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	3 cut(s)	320, 374, 559
MspR9I	CCNGG	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	497
MvnI	CGCG	2 cut(s)	237, 332
MwoI	GCNNNNNNNGC	2 cut(s)	370, 406
NdeII	GATC	3 cut(s)	42, 222, 505
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	2 cut(s)	301, 318
NspV	TTCGAA	2 cut(s)	273, 653
PasI	CCCWGGG	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	239, 290, 491
PflMI	CCANNNNNTGG	2 cut(s)	460, 502
PinAI	ACCGGT	1 cut(s)	558
PkrI	GCNGC	3 cut(s)	334, 337, 408
PpuMI	RGGWCCY	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	301, 318
PspPI	GGNCC	6 cut(s)	205, 299, 317, 451, 556, 576
PspPPI	RGGWCCY	1 cut(s)	576
PsuI	RGATCY	2 cut(s)	222, 505
RsaI	GTAC	2 cut(s)	17, 628
RsaNI	GTAC	2 cut(s)	16, 627
RseI	CAYNNNNRTG	1 cut(s)	681
SacII	CCGCGG	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	59, 543, 662
SatI	GCNGC	3 cut(s)	333, 336, 407
Sau3AI	GATC	3 cut(s)	42, 222, 505
Sau96I	GGNCC	6 cut(s)	205, 299, 317, 451, 556, 576
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	2 cut(s)	460, 608
Sfr303I	CCGCGG	1 cut(s)	333
SfuI	TTCGAA	2 cut(s)	273, 653
SgrBI	CCGCGG	1 cut(s)	333
SinI	GGWCC	6 cut(s)	205, 299, 317, 451, 556, 576
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	3 cut(s)	263, 544, 600
SsiI	CCGC	9 cut(s)	77, 144, 193, 283, 306, 330, 332, 335, 338
StyD4I	CCNGG	1 cut(s)	495
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	8 cut(s)	119, 165, 174, 273, 288, 293, 584, 653
TasI	AATT	3 cut(s)	263, 544, 600
TauI	GCSGC	2 cut(s)	335, 338
TfiI	GAWTC	3 cut(s)	239, 290, 491
Tru1I	TTAA	3 cut(s)	59, 543, 662
Tru9I	TTAA	3 cut(s)	59, 543, 662
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	644
Van91I	CCANNNNNTGG	2 cut(s)	460, 502
VneI	GTGCAC	1 cut(s)	362
VpaK11BI	GGWCC	6 cut(s)	205, 299, 317, 451, 556, 576
XapI	RAATTY	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.