Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Forward (+)

134607 .. 138729

Gene Structure 4123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

atggcacaatctccgtactctctcctcctcctcaggcgtttgatctctcgctattccttaaaccccaaaccctctccgcctctcttctctctcctaaaacccttctctacctcctcctcgaacccaaacccttcctctctctccgctcgcctcagcttcgtcttcgaccaaatcgacgccattgagaaagaccgctccgacaaggaccaaaccctccaaaagatccgagcttggcgcgaatccaaaaacccccaatccccagaattagggttcgaaaatgcccgcctcgattcgattggtccctccgccgacgtgggaccggagaagcccgcggcggcggtgaagaaggaggtggaggtggtgcacccgtggccggagtggattgaactgatggagaggctggtgcagcagaactactttgaccataggaggaaggacgaggacagaatggtccaagaaatgggctttgatgcctctgaaatccatgatgattcccagggtttggatttcagggatttcaaggctgttcatactgcctgtcttaatttcgggaaggaccggtttgatgttttcaggtccttgtcgagacaggatattcaaattttggtgggttttggatgcccgagtacggacaagaaggtggttttctcttcgaagctgttaaggaagcacacccaccttgacgaaggagatgttgtcaagctgagttcagttccaatagatcctagtctacctcctccggtgatcaaaaagccacccccaaaagtgaagcagcctcctctccctccaagaaaacgagttggacgtgatgacattgagatgaaaaacggggactggctatgctctaagtgcgacttcatgaattttgccaagaacagcctgtgcctgcagtgtgatgccaagcgtccaaagagacagctgcttccaggagaatgggagtgcccagagtgcaactttttaaattacaggagaaatatggcatgttttcattgtgattgcaagcgcccacctgatgaatatattgagaacaacatgcaagaaaagcaacgtggccctaggactaggatggataagactgcgattcggcctgaggcatctaatgcctggaattttgattttgatgacaatgagtcagatggggcagatgttgctgcttttgagtatgcggatccagtaaggagtgaagggtctcttgacacccaggctcaaggggaaaattttcgacgtcctgaatacgatttcagtaaaaataggagagtgtcaagggttgacaatgaagaatattctgatgctgacactattaagccaggcagagggtttgatgattttgatgatgaagatgatgatattgacaattacgagttggacactcgtcctaaagattcagcacagaacacttcttcaattgatttttctgaattggagggatctgaatcagaaaacagtgaaggtccagacaataatttgcatgctcacaaaacactctctccatcttacaataagccatctaagtctatgcatcgacgggcagcattatctgtctcagatgatgatgaaattgatttaaattctgacaaagacctttcagttcttcccaaccgaagatcaagtcaggttgctgattctagatcaagaggtaggggtagaaactcaactagtccatcaaagagagtaagctttgtatctgatgatgaagctgggctctactctgatgtggatgatgatctagatcaaaatattagatccagacaaggtaaactgaacaaattgagtcctgggagaaaagactttcagaggagaagaaattttgatagtgaagatgattcaatgtctggttcagaatcagagaatgatgattttcattctcataaaaataggcacagaggaaataaaccaaacagtttcaaaggtgcacaatttaaatccagcggaatgaagagtggcaggaagaactctttcagcgatgatgactttgatagaccaacccgagggtctcgtgataacagaggatttcgagggaatgattttgatggcaagagaatgagtaacagaggtgttgataggcagaattttaaggggcctaaaagagaagcatttggaaatggtggtaggagaaactcttttggtgacgattttgatagatctaaacaagtatctcgtggtaataacagaggatttcgggaaaacaactttgatgggcagagaatgagtaaccgtggctttgataaacacgattttaagggacctaaaagagaaggatttggaaagcagcagcgtgaaagatttaataatgattgggacaaggacagggactttggtaactttagcaatagtcgacgcgttattgaaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

784

Amino Acids

89.88

Weight (kDa)

6.75

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
AatII	GACGTC	1 cut(s)	1228
AccB7I	CCANNNNNTGG	2 cut(s)	460, 502
AccBSI	CCGCTC	2 cut(s)	146, 195
AccI	GTMKAC	2 cut(s)	730, 2335
AccII	CGCG	3 cut(s)	237, 332, 2340
AclWI	GGATC	6 cut(s)	217, 716, 1163, 1176, 1435, 1737
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	7 cut(s)	600, 862, 1108, 1216, 1567, 1804, 2068
AcyI	GRCGYC	2 cut(s)	177, 1225
AfaI	GTAC	2 cut(s)	17, 628
AfiI	CCNNNNNNNGG	7 cut(s)	266, 373, 460, 502, 628, 1313, 1988
AflIII	ACRYGT	1 cut(s)	2338
AgeI	ACCGGT	1 cut(s)	558
AgsI	TTSAA	7 cut(s)	386, 520, 599, 1404, 1827, 1906, 2348
AhdI	GACNNNNNGTC	1 cut(s)	1129
AhlI	ACTAGT	1 cut(s)	1655
AjiI	CACGTC	2 cut(s)	313, 806
AjnI	CCWGG	6 cut(s)	495, 925, 1103, 1200, 1306, 1774
AluBI	AGCT	7 cut(s)	156, 230, 658, 703, 919, 1677, 1697
AluI	AGCT	7 cut(s)	156, 230, 658, 703, 919, 1677, 1697
Alw21I	GWGCWC	2 cut(s)	366, 1915
Alw26I	GTCTC	5 cut(s)	580, 907, 1194, 1546, 1998
Alw44I	GTGCAC	2 cut(s)	362, 1911
AlwI	GGATC	6 cut(s)	217, 716, 1163, 1176, 1435, 1737
Ama87I	CYCGRG	2 cut(s)	622, 1986
AoxI	GGCC	4 cut(s)	371, 1051, 1085, 2078
ApaLI	GTGCAC	2 cut(s)	362, 1911
ApeKI	GCWGC	7 cut(s)	406, 772, 919, 1151, 1529, 2269, 2272
ApoI	RAATTY	7 cut(s)	600, 862, 1108, 1216, 1567, 1804, 2068
ArsI	GACNNNNNNTTYG	4 cut(s)	1594, 1626, 2297, 2329
AsiGI	ACCGGT	1 cut(s)	558
Asp700I	GAANNNNTTC	2 cut(s)	1218, 1955
AspA2I	CCTAGG	1 cut(s)	1055
AspLEI	GCGC	2 cut(s)	237, 1005
AsuHPI	GGTGA	3 cut(s)	352, 754, 2138
AsuII	TTCGAA	2 cut(s)	273, 653
AvaI	CYCGRG	2 cut(s)	622, 1986
AvaII	GGWCC	8 cut(s)	205, 299, 317, 451, 556, 576, 1451, 2243
AvrII	CCTAGG	1 cut(s)	1055
AxyI	CCTNAGG	2 cut(s)	32, 1089
BaeGI	GKGCMC	3 cut(s)	366, 944, 1915
BamHI	GGATCC	1 cut(s)	1168
BanII	GRGCYC	1 cut(s)	1704
BauI	CACGAG	2 cut(s)	1995, 2157
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	366, 1915
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	7 cut(s)	418, 784, 906, 1138, 1541, 2281, 2284
BccI	CCATC	8 cut(s)	385, 1060, 1130, 1498, 1513, 1669, 2024, 2189
BciT130I	CCWGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
BclI	TGATCA	1 cut(s)	744
BcoDI	GTCTC	5 cut(s)	580, 907, 1194, 1546, 1998
BcuI	ACTAGT	1 cut(s)	1655
BfaI	CTAG	6 cut(s)	726, 1056, 1062, 1626, 1656, 1727
BfmI	CTRYAG	1 cut(s)	887
BfoI	RGCGCY	1 cut(s)	1006
BglII	AGATCT	1 cut(s)	2141
BisI	GCNGC	9 cut(s)	333, 336, 407, 773, 920, 1152, 1530, 2270, 2273
BlnI	CCTAGG	1 cut(s)	1055
BlsI	GCNGC	9 cut(s)	334, 337, 408, 774, 921, 1153, 1531, 2271, 2274
Bme1390I	CCNGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
Bme18I	GGWCC	8 cut(s)	205, 299, 317, 451, 556, 576, 1451, 2243
BmeRI	GACNNNNNGTC	1 cut(s)	1129
BmeT110I	CYCGRG	2 cut(s)	622, 1986
BmgBI	CACGTC	2 cut(s)	313, 806
BmiI	GGNNCC	5 cut(s)	301, 318, 1170, 2079, 2244
BmrFI	CCNGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
BmsI	GCATC	6 cut(s)	460, 608, 886, 1103, 1279, 1528
BoxI	GACNNNNGTC	1 cut(s)	1371
BpiI	GAAGAC	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	2 cut(s)	273, 653
BpuEI	CTTGAG	1 cut(s)	1191
BsaBI	GATNNNNATC	3 cut(s)	1432, 1722, 1728
BsaHI	GRCGYC	2 cut(s)	177, 1225
BsaI	GGTCTC	2 cut(s)	1194, 1998
BsaJI	CCNNGG	9 cut(s)	330, 368, 495, 496, 1055, 1200, 1775, 1987, 2215
BsaWI	WCCGGW	3 cut(s)	319, 558, 739
BsaXI	ACNNNNNCTCC	4 cut(s)	681, 711, 1471, 1501
Bsc4I	CCNNNNNNNGG	7 cut(s)	266, 373, 460, 502, 628, 1313, 1988
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	2 cut(s)	839, 1172
Bse21I	CCTNAGG	2 cut(s)	32, 1089
Bse8I	GATNNNNATC	3 cut(s)	1432, 1722, 1728
BseBI	CCWGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
BseDI	CCNNGG	9 cut(s)	330, 368, 495, 496, 1055, 1200, 1775, 1987, 2215
BseGI	GGATG	3 cut(s)	623, 1071, 1723
BseJI	GATNNNNATC	3 cut(s)	1432, 1722, 1728
BseLI	CCNNNNNNNGG	7 cut(s)	266, 373, 460, 502, 628, 1313, 1988
BseMII	CTCAG	5 cut(s)	46, 166, 695, 1080, 1557
BseNI	ACTGG	2 cut(s)	839, 1172
BseRI	GAGGAG	8 cut(s)	14, 17, 20, 103, 106, 726, 768, 1810
BseSI	GKGCMC	3 cut(s)	366, 944, 1915
BseXI	GCAGC	7 cut(s)	418, 784, 906, 1138, 1541, 2281, 2284
BseYI	CCCAGC	1 cut(s)	1697
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	3 cut(s)	237, 332, 2340
BshFI	GGCC	4 cut(s)	373, 1053, 1087, 2080
BshTI	ACCGGT	1 cut(s)	558
BsiHKAI	GWGCWC	2 cut(s)	366, 1915
BsiHKCI	CYCGRG	2 cut(s)	622, 1986
BsiSI	CCGG	4 cut(s)	320, 374, 559, 740
BslFI	GGGAC	6 cut(s)	285, 330, 845, 2256, 2312, 2324
BslI	CCNNNNNNNGG	7 cut(s)	266, 373, 460, 502, 628, 1313, 1988
BsmAI	GTCTC	5 cut(s)	580, 907, 1194, 1546, 1998
BsmFI	GGGAC	6 cut(s)	285, 330, 845, 2256, 2312, 2324
BsnI	GGCC	4 cut(s)	373, 1053, 1087, 2080
Bso31I	GGTCTC	2 cut(s)	1194, 1998
BsoBI	CYCGRG	2 cut(s)	622, 1986
Bsp119I	TTCGAA	2 cut(s)	273, 653
Bsp1286I	GDGCHC	4 cut(s)	366, 944, 1704, 1915
BspANI	GGCC	4 cut(s)	373, 1053, 1087, 2080
BspCNI	CTCAG	5 cut(s)	45, 165, 696, 1081, 1556
BspFNI	CGCG	3 cut(s)	237, 332, 2340
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	5 cut(s)	301, 318, 1170, 2079, 2244
BspMAI	CTGCAG	1 cut(s)	891
BspPI	GGATC	6 cut(s)	217, 716, 1163, 1176, 1435, 1737
BspT104I	TTCGAA	2 cut(s)	273, 653
BspTNI	GGTCTC	2 cut(s)	1194, 1998
BsrBI	CCGCTC	2 cut(s)	146, 195
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	839, 1172
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	9 cut(s)	330, 368, 495, 496, 1055, 1200, 1775, 1987, 2215
BssNI	GRCGYC	2 cut(s)	177, 1225
BssSI	CACGAG	2 cut(s)	1995, 2157
BssT1I	CCWWGG	1 cut(s)	1055
Bst2BI	CACGAG	2 cut(s)	1995, 2157
Bst2UI	CCWGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
Bst4CI	ACNGT	3 cut(s)	1445, 1901, 2216
Bst6I	CTCTTC	3 cut(s)	89, 655, 1931
BstACI	GRCGYC	2 cut(s)	177, 1225
BstAPI	GCANNNNNTGC	2 cut(s)	1100, 1148
BstBI	TTCGAA	2 cut(s)	273, 653
BstC8I	GCNNGC	6 cut(s)	148, 283, 330, 887, 1001, 1470
BstDEI	CTNAG	7 cut(s)	32, 152, 704, 846, 1089, 1509, 1543
BstDSI	CCRYGG	3 cut(s)	330, 368, 2215
BstF5I	GGATG	3 cut(s)	623, 1071, 1723
BstFNI	CGCG	3 cut(s)	237, 332, 2340
BstH2I	RGCGCY	1 cut(s)	1006
BstHHI	GCGC	2 cut(s)	237, 1005
BstMAI	GTCTC	5 cut(s)	580, 907, 1194, 1546, 1998
BstMWI	GCNNNNNNNGC	7 cut(s)	370, 406, 849, 948, 1042, 1100, 1148
BstNI	CCWGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
BstNSI	RCATGY	3 cut(s)	984, 1036, 1472
BstPAI	GACNNNNGTC	1 cut(s)	1371
BstSCI	CCNGG	6 cut(s)	495, 925, 1103, 1200, 1306, 1774
BstSFI	CTRYAG	1 cut(s)	887
BstSLI	GKGCMC	3 cut(s)	366, 944, 1915
BstUI	CGCG	3 cut(s)	237, 332, 2340
BstV1I	GCAGC	7 cut(s)	418, 784, 906, 1138, 1541, 2281, 2284
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	6 cut(s)	222, 721, 1168, 1427, 1742, 2141
BstXI	CCANNNNNNTGG	1 cut(s)	933
BstYI	RGATCY	6 cut(s)	222, 721, 1168, 1427, 1742, 2141
Bsu36I	CCTNAGG	2 cut(s)	32, 1089
BsuRI	GGCC	4 cut(s)	373, 1053, 1087, 2080
BtgI	CCRYGG	3 cut(s)	330, 368, 2215
BtgZI	GCGATG	1 cut(s)	1977
BtrI	CACGTC	2 cut(s)	313, 806
BtsCI	GGATG	3 cut(s)	623, 1071, 1723
BtsI	GCAGTG	1 cut(s)	896
BtsIMutI	CAGTG	2 cut(s)	896, 1450
Cac8I	GCNNGC	6 cut(s)	148, 283, 330, 887, 1001, 1470
CciI	TCATGA	1 cut(s)	858
CfoI	GCGC	2 cut(s)	237, 1005
Cfr10I	RCCGGY	1 cut(s)	558
Cfr42I	CCGCGG	1 cut(s)	333
CseI	GACGC	3 cut(s)	185, 893, 2346
Csp6I	GTAC	2 cut(s)	16, 627
CspAI	ACCGGT	1 cut(s)	558
CviAII	CATG	5 cut(s)	485, 859, 981, 1033, 1469
CviQI	GTAC	2 cut(s)	16, 627
DdeI	CTNAG	7 cut(s)	32, 152, 704, 846, 1089, 1509, 1543
DraI	TTTAAA	3 cut(s)	960, 1566, 1921
DrdI	GACNNNNNNGTC	1 cut(s)	449
DriI	GACNNNNNGTC	1 cut(s)	1129
DseDI	GACNNNNNNGTC	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	371
Eam1104I	CTCTTC	3 cut(s)	89, 655, 1931
Eam1105I	GACNNNNNGTC	1 cut(s)	1129
EarI	CTCTTC	3 cut(s)	89, 655, 1931
EciI	GGCGGA	2 cut(s)	66, 295
Eco130I	CCWWGG	1 cut(s)	1055
Eco24I	GRGCYC	1 cut(s)	1704
Eco31I	GGTCTC	2 cut(s)	1194, 1998
Eco47I	GGWCC	8 cut(s)	205, 299, 317, 451, 556, 576, 1451, 2243
Eco81I	CCTNAGG	2 cut(s)	32, 1089
Eco88I	CYCGRG	2 cut(s)	622, 1986
EcoO109I	RGGNCCY	3 cut(s)	576, 2078, 2243
EcoRII	CCWGG	6 cut(s)	495, 925, 1103, 1200, 1306, 1774
EcoT14I	CCWWGG	1 cut(s)	1055
EcoT22I	ATGCAT	1 cut(s)	1521
EcoT38I	GRGCYC	1 cut(s)	1704
ErhI	CCWWGG	1 cut(s)	1055
FaeI	CATG	5 cut(s)	488, 862, 984, 1036, 1472
FalI	AAGNNNNNCTT	4 cut(s)	839, 871, 1176, 1208
FaqI	GGGAC	6 cut(s)	285, 330, 845, 2256, 2312, 2324
FatI	CATG	5 cut(s)	484, 858, 980, 1032, 1468
FauI	CCCGC	2 cut(s)	290, 337
FbaI	TGATCA	1 cut(s)	744
FblI	GTMKAC	2 cut(s)	730, 2335
Fnu4HI	GCNGC	9 cut(s)	333, 336, 407, 773, 920, 1152, 1530, 2270, 2273
FokI	GGATG	3 cut(s)	630, 1078, 1730
FriOI	GRGCYC	1 cut(s)	1704
Fsp4HI	GCNGC	9 cut(s)	333, 336, 407, 773, 920, 1152, 1530, 2270, 2273
FspBI	CTAG	6 cut(s)	726, 1056, 1062, 1626, 1656, 1727
GlaI	GCGC	2 cut(s)	236, 1004
GluI	GCNGC	9 cut(s)	333, 336, 407, 773, 920, 1152, 1530, 2270, 2273
GsaI	CCCAGC	1 cut(s)	1701
HaeII	RGCGCY	1 cut(s)	1006
HaeIII	GGCC	4 cut(s)	373, 1053, 1087, 2080
HapII	CCGG	4 cut(s)	320, 374, 559, 740
HgaI	GACGC	3 cut(s)	185, 893, 2346
HhaI	GCGC	2 cut(s)	237, 1005
Hin1I	GRCGYC	2 cut(s)	177, 1225
Hin1II	CATG	5 cut(s)	488, 862, 984, 1036, 1472
Hin6I	GCGC	2 cut(s)	235, 1003
HinP1I	GCGC	2 cut(s)	235, 1003
HincII	GTYRAC	2 cut(s)	1270, 2336
HindII	GTYRAC	2 cut(s)	1270, 2336
HindIII	AAGCTT	1 cut(s)	1675
HpaII	CCGG	4 cut(s)	320, 374, 559, 740
HphI	GGTGA	3 cut(s)	352, 754, 2138
Hpy166II	GTNNAC	6 cut(s)	364, 731, 1270, 1757, 1913, 2336
Hpy8I	GTNNAC	6 cut(s)	364, 731, 1270, 1757, 1913, 2336
Hpy99I	CGWCG	5 cut(s)	179, 314, 1227, 1527, 2340
HpyCH4III	ACNGT	3 cut(s)	1445, 1901, 2216
HpyCH4IV	ACGT	4 cut(s)	312, 805, 1048, 1225
HpyCH4V	TGCA	9 cut(s)	364, 406, 889, 951, 999, 1036, 1468, 1519, 1913
HpyF10VI	GCNNNNNNNGC	7 cut(s)	370, 406, 849, 948, 1042, 1100, 1148
HpyF3I	CTNAG	7 cut(s)	32, 152, 704, 846, 1089, 1509, 1543
HpySE526I	ACGT	4 cut(s)	312, 805, 1048, 1225
Hsp92I	GRCGYC	2 cut(s)	177, 1225
Hsp92II	CATG	5 cut(s)	488, 862, 984, 1036, 1472
HspAI	GCGC	2 cut(s)	235, 1003
Ksp22I	TGATCA	1 cut(s)	744
KspI	CCGCGG	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	7 cut(s)	418, 784, 906, 1138, 1541, 2281, 2284
LweI	GCATC	6 cut(s)	460, 608, 886, 1103, 1279, 1528
MaeI	CTAG	6 cut(s)	726, 1056, 1062, 1626, 1656, 1727
MaeII	ACGT	4 cut(s)	312, 805, 1048, 1225
MaeIII	GTNAC	4 cut(s)	2045, 2126, 2210, 2318
MbiI	CCGCTC	2 cut(s)	146, 195
MfeI	CAATTG	1 cut(s)	1404
MflI	RGATCY	6 cut(s)	222, 721, 1168, 1427, 1742, 2141
MhlI	GDGCHC	4 cut(s)	366, 944, 1704, 1915
MluI	ACGCGT	1 cut(s)	2338
MlyI	GAGTC	2 cut(s)	1139, 1780
MmeI	TCCRAC	3 cut(s)	222, 781, 1344
Mph1103I	ATGCAT	1 cut(s)	1521
MroXI	GAANNNNTTC	2 cut(s)	1218, 1955
MslI	CAYNNNNRTG	1 cut(s)	818
MspA1I	CMGCKG	3 cut(s)	332, 919, 1929
MspI	CCGG	4 cut(s)	320, 374, 559, 740
MspR9I	CCNGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
MunI	CAATTG	1 cut(s)	1404
MvaI	CCWGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
MvnI	CGCG	3 cut(s)	237, 332, 2340
MwoI	GCNNNNNNNGC	7 cut(s)	370, 406, 849, 948, 1042, 1100, 1148
NlaIII	CATG	5 cut(s)	488, 862, 984, 1036, 1472
NlaIV	GGNNCC	5 cut(s)	301, 318, 1170, 2079, 2244
NmuCI	GTSAC	1 cut(s)	2126
NsiI	ATGCAT	1 cut(s)	1521
NspI	RCATGY	3 cut(s)	984, 1036, 1472
NspV	TTCGAA	2 cut(s)	273, 653
PaeI	GCATGC	1 cut(s)	1472
PagI	TCATGA	1 cut(s)	858
PasI	CCCWGGG	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 802
PdmI	GAANNNNTTC	2 cut(s)	1218, 1955
PfeI	GAWTC	9 cut(s)	239, 290, 491, 1081, 1382, 1433, 1622, 1823, 1841
PflMI	CCANNNNNTGG	2 cut(s)	460, 502
PfoI	TCCNGGA	1 cut(s)	925
PinAI	ACCGGT	1 cut(s)	558
PkrI	GCNGC	9 cut(s)	334, 337, 408, 774, 921, 1153, 1531, 2271, 2274
PleI	GAGTC	2 cut(s)	1138, 1779
PpsI	GAGTC	2 cut(s)	1138, 1779
PpuMI	RGGWCCY	2 cut(s)	576, 2243
PshAI	GACNNNNGTC	1 cut(s)	1371
Psp5II	RGGWCCY	2 cut(s)	576, 2243
Psp6I	CCWGG	6 cut(s)	495, 925, 1103, 1200, 1306, 1774
PspFI	CCCAGC	1 cut(s)	1697
PspGI	CCWGG	6 cut(s)	495, 925, 1103, 1200, 1306, 1774
PspN4I	GGNNCC	5 cut(s)	301, 318, 1170, 2079, 2244
PspPPI	RGGWCCY	2 cut(s)	576, 2243
PstI	CTGCAG	1 cut(s)	891
PsuI	RGATCY	6 cut(s)	222, 721, 1168, 1427, 1742, 2141
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	2 cut(s)	17, 628
RsaNI	GTAC	2 cut(s)	16, 627
RseI	CAYNNNNRTG	1 cut(s)	818
SacII	CCGCGG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	2334
SatI	GCNGC	9 cut(s)	333, 336, 407, 773, 920, 1152, 1530, 2270, 2273
SchI	GAGTC	2 cut(s)	1139, 1780
ScrFI	CCNGG	6 cut(s)	497, 927, 1105, 1202, 1308, 1776
SduI	GDGCHC	4 cut(s)	366, 944, 1704, 1915
SfaNI	GCATC	6 cut(s)	460, 608, 886, 1103, 1279, 1528
SfcI	CTRYAG	1 cut(s)	887
Sfr303I	CCGCGG	1 cut(s)	333
SfuI	TTCGAA	2 cut(s)	273, 653
SgrBI	CCGCGG	1 cut(s)	333
SinI	GGWCC	8 cut(s)	205, 299, 317, 451, 556, 576, 1451, 2243
SmiI	ATTTAAAT	2 cut(s)	1566, 1921
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	1 cut(s)	1206
SmoI	CTYRAG	1 cut(s)	1206
SpeI	ACTAGT	1 cut(s)	1655
SphI	GCATGC	1 cut(s)	1472
SspI	AATATT	2 cut(s)	1283, 1738
SspMI	CTAG	6 cut(s)	726, 1056, 1062, 1626, 1656, 1727
StyD4I	CCNGG	6 cut(s)	495, 925, 1103, 1200, 1306, 1774
StyI	CCWWGG	1 cut(s)	1055
SwaI	ATTTAAAT	2 cut(s)	1566, 1921
TaaI	ACNGT	3 cut(s)	1445, 1901, 2216
TaiI	ACGT	4 cut(s)	315, 808, 1051, 1228
TauI	GCSGC	2 cut(s)	335, 338
TfiI	GAWTC	9 cut(s)	239, 290, 491, 1081, 1382, 1433, 1622, 1823, 1841
TscAI	CASTG	2 cut(s)	896, 1450
TseFI	GTSAC	1 cut(s)	2126
TseI	GCWGC	7 cut(s)	406, 772, 919, 1151, 1529, 2269, 2272
Tsp45I	GTSAC	1 cut(s)	2126
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	896, 1450
Van91I	CCANNNNNTGG	2 cut(s)	460, 502
VneI	GTGCAC	2 cut(s)	362, 1911
VpaK11BI	GGWCC	8 cut(s)	205, 299, 317, 451, 556, 576, 1451, 2243
XapI	RAATTY	7 cut(s)	600, 862, 1108, 1216, 1567, 1804, 2068
XbaI	TCTAGA	2 cut(s)	1625, 1726
XceI	RCATGY	3 cut(s)	984, 1036, 1472
XmaJI	CCTAGG	1 cut(s)	1055
XmiI	GTMKAC	2 cut(s)	730, 2335
XmnI	GAANNNNTTC	2 cut(s)	1218, 1955
XspI	CTAG	6 cut(s)	726, 1056, 1062, 1626, 1656, 1727
ZraI	GACGTC	1 cut(s)	1226
Zsp2I	ATGCAT	1 cut(s)	1521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.