Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006072

Physical Location & Seq

Genomic Coordinates Forward (+)

57219415 .. 57220627

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00325480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCATGTTTTCATTGTGATTGCAAGCGCCCACCTGACGAATATATTGAGAATAACATGCAAGAAAAGCAACGTGGCCCTAGGACTAGGATGGATAAGACTGCGATTCGGCCCGAGGCCTCTAATGCCTGGAATTTTGATTTTGATAACAATGAGTCGGATGTTGCTGCTTTTGAATATGCAGATCCAGGATCTGAATCAGAAAACAGTGAAGGTCCAGACAATAATCTGCAAGCTCGCAAAACGAACACTCCATCTTACAATAAGCCATCTAAGTCTATGCATCGATGGGCAGCATTATCTGTCTCAGATGATGATGAAATTGATATAAATGCAGACGAAGACATTTCAGTTCTTCCCAACCGGAGATCATGTCATGTTGCTGATTCTAGATCAAGAGGTAGGGGTAGAAACTCAACTGGTCCATCAAAGAGAGTAAGCTTTGTATCTGATGATGAAGCTGGGCTCCACTCTGATGTGGATGATTATCTAGATCAAAATATTAGATCCAGAGAAGGTAAACTGAACAAATTGGGTTCTGGGAGAAAAGACTTTCAGAGGAGAAGAAATTTTGGTAGTGGTGATGATTCTGTGACTGGTTCAAACCAAACAGTCAAAGGTGCACAATTTAAATCCAGTGGAACGAAGAGTGGCACGAAGAACTCTTTCAGCGATGATGACTTTGATAGACCAACCCGGGGGTCTCGTGATAACAGAGGATTTCGAGGGAATGATTTTGATGGGAAGAGAATGAGTAACAGAGGTGTTGATAGGCAGAGAGATTTGGAAATGGTGGCAGGAAACTCTTTTGGTGACGATTTTGATAGATCTAATAACAGAGGATTTCGGGAAAACAACTTTGATGAGCACAGAATGAGTAACCGTGGCTTTGATAAACACGATTTTAGGGGACCTAAAAGAGATGGATTTGGAAAGCAGCAGCGTAAAAGATTAAATAAAGATTTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

323

Amino Acids

36.68

Weight (kDa)

7.69

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55040
fragaria_vesca	FvH4_6g06160
malus_domestica	MD04G1203800.v1.1 MD12G1217600.v1.1
prunus_persica	Prupe.6G323900_v2.0.a1 Prupe.6G323900_v2.0.a1
pyrus_communis	pycom04g18030 pycom12g20320
rosa_chinensis	RchiOBHm_Chr1g0324471 RchiOBHm_Chr3g0455171
rosa_laevigata	RLG00000025382 RLG00000030198
rosa_multiflora	Rmu_sc0002169.1_g000027 Rmu_sc0002502.1_g000001 Rmu_sc0013000.1_g000010
rosa_roxburghii	Rroxscaffold_4G00325480 Rroxscaffold_6G00424520
rosa_rugosa	Rorug01G0046100 Rorug03G0004100 Rorug03G0004200
rosa_samantha	Rh1AG061900 Rh3AG065000 Rh3BG067100 Rh3CG065500 Rh3DG067000
rosa_wichuraiana	Rw1G005240 Rw3G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	179, 199, 501
AcsI	RAATTY	2 cut(s)	133, 568
AfiI	CCNNNNNNNGG	1 cut(s)	698
AgsI	TTSAA	2 cut(s)	176, 603
AjnI	CCWGG	2 cut(s)	128, 187
AluBI	AGCT	3 cut(s)	236, 441, 461
AluI	AGCT	3 cut(s)	236, 441, 461
Alw21I	GWGCWC	2 cut(s)	625, 870
Alw26I	GTCTC	2 cut(s)	310, 708
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	179, 199, 501
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	2 cut(s)	113, 696
AoxI	GGCC	3 cut(s)	76, 110, 117
ApaLI	GTGCAC	1 cut(s)	621
ApeKI	GCWGC	4 cut(s)	167, 293, 937, 940
ApoI	RAATTY	2 cut(s)	133, 568
Asp700I	GAANNNNTTC	1 cut(s)	665
AspA2I	CCTAGG	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	5 cut(s)	77, 111, 215, 422, 911
AsuC2I	CCSGG	2 cut(s)	697, 698
AsuHPI	GGTGA	2 cut(s)	593, 824
AvaI	CYCGRG	2 cut(s)	113, 696
AvaII	GGWCC	3 cut(s)	215, 422, 911
AvrII	CCTAGG	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	625, 870
BbvI	GCAGC	4 cut(s)	154, 305, 949, 952
BccI	CCATC	7 cut(s)	85, 262, 277, 282, 433, 734, 917
BciT130I	CCWGG	2 cut(s)	130, 189
BcnI	CCSGG	2 cut(s)	697, 698
BcoDI	GTCTC	2 cut(s)	310, 708
BfaI	CTAG	4 cut(s)	81, 87, 390, 491
BfoI	RGCGCY	1 cut(s)	31
BglII	AGATCT	1 cut(s)	827
BisI	GCNGC	4 cut(s)	168, 294, 938, 941
BlnI	CCTAGG	1 cut(s)	80
BlsI	GCNGC	4 cut(s)	169, 295, 939, 942
Bme1390I	CCNGG	4 cut(s)	130, 189, 697, 698
Bme18I	GGWCC	3 cut(s)	215, 422, 911
BmeT110I	CYCGRG	2 cut(s)	113, 696
BmgT120I	GGNCC	5 cut(s)	77, 111, 215, 422, 911
BmiI	GGNNCC	2 cut(s)	467, 912
BmrFI	CCNGG	4 cut(s)	130, 189, 697, 698
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	697, 698
Bsa29I	ATCGAT	1 cut(s)	286
BsaBI	GATNNNNATC	2 cut(s)	196, 486
BsaI	GGTCTC	1 cut(s)	708
BsaJI	CCNNGG	5 cut(s)	80, 114, 696, 697, 883
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 265, 358, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse1I	ACTGG	3 cut(s)	424, 601, 636
Bse8I	GATNNNNATC	2 cut(s)	196, 486
BseBI	CCWGG	2 cut(s)	130, 189
BseCI	ATCGAT	1 cut(s)	286
BseDI	CCNNGG	5 cut(s)	80, 114, 696, 697, 883
BseGI	GGATG	3 cut(s)	96, 166, 487
BseJI	GATNNNNATC	2 cut(s)	196, 486
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	424, 601, 636
BseRI	GAGGAG	1 cut(s)	574
BseSI	GKGCMC	1 cut(s)	625
BseXI	GCAGC	4 cut(s)	154, 305, 949, 952
BseYI	CCCAGC	1 cut(s)	461
BshFI	GGCC	3 cut(s)	78, 112, 119
BshVI	ATCGAT	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	625, 870
BsiHKCI	CYCGRG	2 cut(s)	113, 696
BsiSI	CCGG	2 cut(s)	364, 697
BslFI	GGGAC	1 cut(s)	924
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	2 cut(s)	310, 708
BsmFI	GGGAC	1 cut(s)	924
BsnI	GGCC	3 cut(s)	78, 112, 119
Bso31I	GGTCTC	1 cut(s)	708
BsoBI	CYCGRG	2 cut(s)	113, 696
Bsp1286I	GDGCHC	3 cut(s)	468, 625, 870
Bsp143I	GATC	7 cut(s)	184, 191, 368, 392, 493, 506, 827
BspANI	GGCC	3 cut(s)	78, 112, 119
BspCNI	CTCAG	1 cut(s)	320
BspDI	ATCGAT	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	467, 912
BspPI	GGATC	3 cut(s)	179, 199, 501
BspTNI	GGTCTC	1 cut(s)	708
BsrI	ACTGG	3 cut(s)	424, 601, 636
BssECI	CCNNGG	5 cut(s)	80, 114, 696, 697, 883
BssMI	GATC	7 cut(s)	184, 191, 368, 392, 493, 506, 827
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	2 cut(s)	130, 189
Bst4CI	ACNGT	3 cut(s)	209, 613, 884
Bst6I	CTCTTC	2 cut(s)	641, 740
BstC8I	GCNNGC	3 cut(s)	26, 234, 238
BstDEI	CTNAG	2 cut(s)	273, 307
BstDSI	CCRYGG	1 cut(s)	883
BstF5I	GGATG	3 cut(s)	96, 166, 487
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	7 cut(s)	187, 194, 371, 395, 496, 509, 830
BstMAI	GTCTC	2 cut(s)	310, 708
BstMBI	GATC	7 cut(s)	184, 191, 368, 392, 493, 506, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 125
BstNI	CCWGG	2 cut(s)	130, 189
BstNSI	RCATGY	2 cut(s)	9, 61
BstSCI	CCNGG	4 cut(s)	128, 187, 695, 696
BstSLI	GKGCMC	1 cut(s)	625
BstV1I	GCAGC	4 cut(s)	154, 305, 949, 952
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	4 cut(s)	184, 191, 506, 827
BstYI	RGATCY	4 cut(s)	184, 191, 506, 827
Bsu15I	ATCGAT	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	78, 112, 119
BsuTUI	ATCGAT	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	883
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	3 cut(s)	96, 166, 487
BtsIMutI	CAGTG	2 cut(s)	214, 643
Cac8I	GCNNGC	3 cut(s)	26, 234, 238
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	5 cut(s)	77, 111, 215, 422, 911
Cfr9I	CCCGGG	1 cut(s)	696
ClaI	ATCGAT	1 cut(s)	286
CviAII	CATG	4 cut(s)	6, 58, 372, 377
CviJI	RGCY	9 cut(s)	78, 112, 119, 236, 268, 441, 461, 466, 888
CviKI_1	RGCY	9 cut(s)	78, 112, 119, 236, 268, 441, 461, 466, 888
DdeI	CTNAG	2 cut(s)	273, 307
DpnI	GATC	7 cut(s)	186, 193, 370, 394, 495, 508, 829
DpnII	GATC	7 cut(s)	184, 191, 368, 392, 493, 506, 827
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	641, 740
EarI	CTCTTC	2 cut(s)	641, 740
Eco130I	CCWWGG	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	708
Eco47I	GGWCC	3 cut(s)	215, 422, 911
Eco88I	CYCGRG	2 cut(s)	113, 696
EcoO109I	RGGNCCY	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	128, 187
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	4 cut(s)	9, 61, 375, 380
FaiI	YATR	8 cut(s)	7, 45, 59, 180, 281, 329, 373, 378
FaqI	GGGAC	1 cut(s)	924
FatI	CATG	4 cut(s)	5, 57, 371, 376
Fnu4HI	GCNGC	4 cut(s)	168, 294, 938, 941
FokI	GGATG	3 cut(s)	103, 173, 494
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	168, 294, 938, 941
FspBI	CTAG	4 cut(s)	81, 87, 390, 491
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	4 cut(s)	168, 294, 938, 941
GsaI	CCCAGC	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	3 cut(s)	78, 112, 119
HapII	CCGG	2 cut(s)	364, 697
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	9, 61, 375, 380
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	5 cut(s)	106, 155, 197, 386, 587
HpaII	CCGG	2 cut(s)	364, 697
HphI	GGTGA	2 cut(s)	593, 824
Hpy166II	GTNNAC	2 cut(s)	521, 623
Hpy188I	TCNGA	8 cut(s)	160, 196, 202, 310, 451, 475, 558, 971
Hpy188III	TCNNGA	7 cut(s)	218, 390, 396, 491, 510, 707, 848
Hpy8I	GTNNAC	2 cut(s)	521, 623
HpyAV	CCTTC	2 cut(s)	206, 509
HpyCH4III	ACNGT	3 cut(s)	209, 613, 884
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	7 cut(s)	24, 61, 182, 232, 283, 335, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 125
HpyF3I	CTNAG	2 cut(s)	273, 307
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	4 cut(s)	9, 61, 375, 380
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	7 cut(s)	184, 191, 368, 392, 493, 506, 827
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	4 cut(s)	154, 305, 949, 952
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	4 cut(s)	81, 87, 390, 491
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	4 cut(s)	592, 755, 812, 878
MalI	GATC	7 cut(s)	186, 193, 370, 394, 495, 508, 829
MboI	GATC	7 cut(s)	184, 191, 368, 392, 493, 506, 827
MboII	GAAGA	6 cut(s)	347, 353, 576, 658, 670, 757
MflI	RGATCY	4 cut(s)	184, 191, 506, 827
MhlI	GDGCHC	3 cut(s)	468, 625, 870
MluCI	AATT	5 cut(s)	133, 321, 530, 568, 626
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	8 cut(s)	109, 130, 392, 552, 710, 719, 755, 833
Mph1103I	ATGCAT	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	3 cut(s)	630, 953, 965
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	2 cut(s)	364, 697
MspR9I	CCNGG	4 cut(s)	130, 189, 697, 698
MvaI	CCWGG	2 cut(s)	130, 189
MwoI	GCNNNNNNNGC	2 cut(s)	67, 125
NciI	CCSGG	2 cut(s)	697, 698
NdeII	GATC	7 cut(s)	184, 191, 368, 392, 493, 506, 827
NlaIII	CATG	4 cut(s)	9, 61, 375, 380
NlaIV	GGNNCC	2 cut(s)	467, 912
NmuCI	GTSAC	2 cut(s)	592, 812
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	2 cut(s)	9, 61
PceI	AGGCCT	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	4 cut(s)	106, 197, 386, 587
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	169, 295, 939, 942
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	911
Psp5II	RGGWCCY	1 cut(s)	911
Psp6I	CCWGG	2 cut(s)	128, 187
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	128, 187
PspN4I	GGNNCC	2 cut(s)	467, 912
PspPI	GGNCC	5 cut(s)	77, 111, 215, 422, 911
PspPPI	RGGWCCY	1 cut(s)	911
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	4 cut(s)	184, 191, 506, 827
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	630, 953, 965
SatI	GCNGC	4 cut(s)	168, 294, 938, 941
Sau3AI	GATC	7 cut(s)	184, 191, 368, 392, 493, 506, 827
Sau96I	GGNCC	5 cut(s)	77, 111, 215, 422, 911
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	130, 189, 697, 698
SduI	GDGCHC	3 cut(s)	468, 625, 870
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	3 cut(s)	215, 422, 911
SmaI	CCCGGG	1 cut(s)	698
SmiI	ATTTAAAT	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	5 cut(s)	133, 321, 530, 568, 626
SseBI	AGGCCT	1 cut(s)	119
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	4 cut(s)	81, 87, 390, 491
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	4 cut(s)	128, 187, 695, 696
StyI	CCWWGG	1 cut(s)	80
SwaI	ATTTAAAT	1 cut(s)	631
TaaI	ACNGT	3 cut(s)	209, 613, 884
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	286, 724
TasI	AATT	5 cut(s)	133, 321, 530, 568, 626
TfiI	GAWTC	4 cut(s)	106, 197, 386, 587
Tru1I	TTAA	3 cut(s)	630, 953, 965
Tru9I	TTAA	3 cut(s)	630, 953, 965
TscAI	CASTG	2 cut(s)	214, 643
TseFI	GTSAC	2 cut(s)	592, 812
TseI	GCWGC	4 cut(s)	167, 293, 937, 940
Tsp45I	GTSAC	2 cut(s)	592, 812
TspDTI	ATGAA	2 cut(s)	333, 471
TspMI	CCCGGG	1 cut(s)	696
TspRI	CASTG	2 cut(s)	214, 643
VneI	GTGCAC	1 cut(s)	621
VpaK11BI	GGWCC	3 cut(s)	215, 422, 911
XapI	RAATTY	2 cut(s)	133, 568
XbaI	TCTAGA	2 cut(s)	389, 490
XceI	RCATGY	2 cut(s)	9, 61
XmaI	CCCGGG	1 cut(s)	696
XmaJI	CCTAGG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	4 cut(s)	81, 87, 390, 491
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.