RchiOBHm_Chr3g0472621

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002694
Physical Location & Seq
Forward (+)
18550336 .. 18551849
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43831

Sequence Viewer

Length: 1440 bp
ATGCAAAGGCGCCTACAGGAAAGGAGATGCGGAAGTCGGAGAGCATCAATATATATGGTCAACTTTAGTTCAGTTGTCTGCATATACAGAGTTCCTGAAAGCCTTGTGGGAATCAGTCCAAAAGCTATTAGGCCTGAAAAGGTCTCCATCGGACCTTATCACCACAGCAAGAGCAAGGAATCTGAAGAGACCAAAATGAAGTATTTTGAAGCTTTTCTCTCTAGAAAAAAGAGAGATGGTAGTGCTGGACCTGATCTAAGTACCTTGTTTAAAGCCGCGAGAAATATGGAGGCAGAAGCAAGAAGATGCTATGATGATCAGGCCATCGCTATGTCAAGCGCGGAGTTTGTTGCAATGATGGTACTTGATGGGTGCTTTATCATTGAGCTTTTCCTACAAGACCAAGAGGACAAACTCAAAGATGTTAAAGAGAAGGACCGCCTGGTTATGGACCTCCTCAAGCTTGAAAACCAACTGCCTTTCTTCGTCCTTGAAAGACTATTTAGCCTGTCCGGTGATTCATCTGCACCAGGTGATTCTCTAGCCTTGCTTGCCTTGAAGTTCTTCAATGTTTATGATCACAAAGTCCTGGATGATGTTAAACACTTGTTACACTTGTTTCACTCAAGCTTCCGTACCCCTTTATTATTAGAACGAGATAATACTCGATATCAGCTCTCTAATATTAGAAGCCGCTGCGTAGACTTACTTGGGGAAGCTGATGATGTAATGATTGCATATGTAACGACATGCCTATCAATCGACAGCCCAGCGACCGCAATGAGGTTAGTCGGTTCGATCCTTTTCTTCTTTGTTTGGTGGAACGTGGATAACGTTCAAAGATTCCTTCACCCCACAGGTCAGGAGCATCGTCCTTTCTCCGATTCAATACAATGTGCCACACAACTAAGACCCTCCGGGATCATTTTCAAGCCACTCCTAGCAGAAAGCTTCTTAACTATCGATTACCACAAACGGGTACTGCAAATACCACCCATAACCATCAACGATATCACTATTACTATCTTCATCAACAGCATAGCCTTAGAACAATGTTGCCCACACAAGACTGGTTCTTTATTTACCACTTACATTGCCTTCATGAGCTCTCTCATCAATACCCCTAGAGACGTCGCATTGCTTTCTGGTAACGGGATTATCATTACCAGCTTCTCACACAACGACCATAGCATAGCTGACCTGTTGAACAAGTTAGGGAAAACAGTTTATTTCGACAAGGATTGCTACCTCTCCAAGCAATTCAGAGACGTGGAGGCTTATTACAACAGCCATTGGGGTACTTTTCTACGAACTTATTTTAGCGCCCCATGGTCCTTCATTTCAGTTGTCTCAGCCTGCATTCTTCTTTTGCTGGCCGCAGCTCAAACAGTTGTGTCTATCTTGAGCTATATCAAACAAATGTCGGACAAGGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

479

Amino Acids

54.48

Weight (kDa)

8.19

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 28 - 458 2.4e-94 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1134
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 702
AccII CGCG 2 cut(s) 278, 341
AciI CCGC 7 cut(s) 30, 276, 341, 439, 694, 777, 1377
AclI AACGTT 1 cut(s) 834
AclWI GGATC 2 cut(s) 793, 929
AcoI YGGCCR 1 cut(s) 1374
AcuI CTGAAG 1 cut(s) 204
AcyI GRCGYC 2 cut(s) 10, 1131
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 5 cut(s) 262, 363, 637, 981, 1300
AfiI CCNNNNNNNGG 3 cut(s) 448, 783, 976
AgsI TTSAA 9 cut(s) 209, 467, 494, 559, 568, 839, 888, 931, 1207
AjiI CACGTC 1 cut(s) 1270
AjnI CCWGG 3 cut(s) 441, 529, 588
Alw21I GWGCWC 1 cut(s) 1109
Alw26I GTCTC 5 cut(s) 148, 182, 1122, 1260, 1354
AlwI GGATC 2 cut(s) 793, 929
AoxI GGCC 3 cut(s) 131, 321, 1374
ApeKI GCWGC 2 cut(s) 696, 1379
Asp700I GAANNNNTTC 2 cut(s) 213, 563
AspLEI GCGC 3 cut(s) 12, 341, 1325
AspS9I GGNCC 5 cut(s) 152, 248, 436, 451, 1332
AsuC2I CCSGG 1 cut(s) 919
AsuHPI GGTGA 4 cut(s) 152, 527, 545, 842
AvaII GGWCC 5 cut(s) 152, 248, 436, 451, 1332
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 1109
Bbv12I GWGCWC 1 cut(s) 1109
BbvI GCAGC 2 cut(s) 683, 1391
BccI CCATC 6 cut(s) 155, 230, 332, 352, 362, 1010
BciT130I CCWGG 3 cut(s) 443, 531, 590
BclI TGATCA 2 cut(s) 316, 577
BcnI CCSGG 1 cut(s) 919
BcoDI GTCTC 5 cut(s) 148, 182, 1122, 1260, 1354
BfaI CTAG 4 cut(s) 222, 542, 941, 1125
BfmI CTRYAG 1 cut(s) 14
BfoI RGCGCY 2 cut(s) 13, 1326
BisI GCNGC 5 cut(s) 276, 694, 697, 1377, 1380
BlsI GCNGC 5 cut(s) 277, 695, 698, 1378, 1381
Bme1390I CCNGG 4 cut(s) 443, 531, 590, 919
Bme18I GGWCC 5 cut(s) 152, 248, 436, 451, 1332
BmgBI CACGTC 1 cut(s) 1270
BmgT120I GGNCC 5 cut(s) 152, 248, 436, 451, 1332
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 4 cut(s) 443, 531, 590, 919
BmsI GCATC 4 cut(s) 17, 53, 296, 877
BpuEI CTTGAG 3 cut(s) 443, 610, 1423
BpuMI CCSGG 1 cut(s) 919
Bsa29I ATCGAT 1 cut(s) 963
BsaHI GRCGYC 2 cut(s) 10, 1131
BsaI GGTCTC 2 cut(s) 148, 182
BsaJI CCNNGG 1 cut(s) 1328
BsaWI WCCGGW 1 cut(s) 512
Bsc4I CCNNNNNNNGG 3 cut(s) 448, 783, 976
Bse1I ACTGG 1 cut(s) 1075
Bse3DI GCAATG 4 cut(s) 360, 786, 1092, 1136
BseBI CCWGG 3 cut(s) 443, 531, 590
BseCI ATCGAT 1 cut(s) 963
BseDI CCNNGG 1 cut(s) 1328
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 3 cut(s) 448, 783, 976
BseMI GCAATG 4 cut(s) 360, 786, 1092, 1136
BseMII CTCAG 1 cut(s) 1365
BseNI ACTGG 1 cut(s) 1075
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 2 cut(s) 683, 1391
BseYI CCCAGC 1 cut(s) 769
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 2 cut(s) 278, 341
Bsh1285I CGRYCG 1 cut(s) 777
BshFI GGCC 3 cut(s) 133, 323, 1376
BshNI GGYRCC 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 963
BsiEI CGRYCG 1 cut(s) 777
BsiHKAI GWGCWC 1 cut(s) 1109
BsiSI CCGG 2 cut(s) 513, 918
BslI CCNNNNNNNGG 3 cut(s) 448, 783, 976
BsmAI GTCTC 5 cut(s) 148, 182, 1122, 1260, 1354
BsmBI CGTCTC 2 cut(s) 1122, 1260
BsmI GAATGC 1 cut(s) 1359
BsnI GGCC 3 cut(s) 133, 323, 1376
Bso31I GGTCTC 2 cut(s) 148, 182
Bsp1286I GDGCHC 1 cut(s) 1109
Bsp143I GATC 5 cut(s) 253, 316, 577, 798, 921
Bsp19I CCATGG 1 cut(s) 1328
BspACI CCGC 7 cut(s) 30, 276, 341, 439, 694, 777, 1377
BspANI GGCC 3 cut(s) 133, 323, 1376
BspCNI CTCAG 1 cut(s) 1364
BspDI ATCGAT 1 cut(s) 963
BspFNI CGCG 2 cut(s) 278, 341
BspHI TCATGA 1 cut(s) 1101
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 2 cut(s) 793, 929
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 2 cut(s) 148, 182
BsrDI GCAATG 4 cut(s) 360, 786, 1092, 1136
BsrI ACTGG 1 cut(s) 1075
BssECI CCNNGG 1 cut(s) 1328
BssMI GATC 5 cut(s) 253, 316, 577, 798, 921
BssNI GRCGYC 2 cut(s) 10, 1131
BssT1I CCWWGG 1 cut(s) 1328
Bst2UI CCWGG 3 cut(s) 443, 531, 590
Bst4CI ACNGT 2 cut(s) 1225, 1390
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 2 cut(s) 10, 1131
BstC8I GCNNGC 3 cut(s) 552, 1357, 1374
BstDEI CTNAG 4 cut(s) 257, 908, 1045, 1351
BstDSI CCRYGG 1 cut(s) 1328
BstF5I GGATG 1 cut(s) 598
BstFNI CGCG 2 cut(s) 278, 341
BstH2I RGCGCY 2 cut(s) 13, 1326
BstHHI GCGC 3 cut(s) 12, 341, 1325
BstKTI GATC 5 cut(s) 256, 319, 580, 801, 924
BstMAI GTCTC 5 cut(s) 148, 182, 1122, 1260, 1354
BstMBI GATC 5 cut(s) 253, 316, 577, 798, 921
BstMCI CGRYCG 1 cut(s) 777
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstNI CCWGG 3 cut(s) 443, 531, 590
BstNSI RCATGY 1 cut(s) 753
BstSCI CCNGG 4 cut(s) 441, 529, 588, 917
BstSFI CTRYAG 1 cut(s) 14
BstUI CGCG 2 cut(s) 278, 341
BstV1I GCAGC 2 cut(s) 683, 1391
Bsu15I ATCGAT 1 cut(s) 963
BsuRI GGCC 3 cut(s) 133, 323, 1376
BsuTUI ATCGAT 1 cut(s) 963
BtgI CCRYGG 1 cut(s) 1328
BtgZI GCGATG 1 cut(s) 310
BtrI CACGTC 1 cut(s) 1270
BtsCI GGATG 1 cut(s) 598
Cac8I GCNNGC 3 cut(s) 552, 1357, 1374
CciI TCATGA 1 cut(s) 1101
CfoI GCGC 3 cut(s) 12, 341, 1325
Cfr13I GGNCC 5 cut(s) 152, 248, 436, 451, 1332
ClaI ATCGAT 1 cut(s) 963
CsiI ACCWGGT 1 cut(s) 529
Csp6I GTAC 5 cut(s) 261, 362, 636, 980, 1299
CspCI CAANNNNNGTGG 2 cut(s) 1075, 1110
CviAII CATG 3 cut(s) 750, 1102, 1329
CviQI GTAC 5 cut(s) 261, 362, 636, 980, 1299
DdeI CTNAG 4 cut(s) 257, 908, 1045, 1351
DinI GGCGCC 1 cut(s) 11
DpnI GATC 5 cut(s) 255, 318, 579, 800, 923
DpnII GATC 5 cut(s) 253, 316, 577, 798, 921
DraI TTTAAA 1 cut(s) 271
DraIII CACNNNGTG 1 cut(s) 533
EaeI YGGCCR 1 cut(s) 1374
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 1107
Eco130I CCWWGG 1 cut(s) 1328
Eco147I AGGCCT 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 1109
Eco31I GGTCTC 2 cut(s) 148, 182
Eco32I GATATC 2 cut(s) 671, 1012
Eco47I GGWCC 5 cut(s) 152, 248, 436, 451, 1332
Eco53kI GAGCTC 1 cut(s) 1107
Eco57I CTGAAG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 1107
EcoRII CCWGG 3 cut(s) 441, 529, 588
EcoRV GATATC 2 cut(s) 671, 1012
EcoT14I CCWWGG 1 cut(s) 1328
EcoT38I GRGCYC 1 cut(s) 1109
EgeI GGCGCC 1 cut(s) 11
EheI GGCGCC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 1328
Esp3I CGTCTC 2 cut(s) 1122, 1260
FaeI CATG 3 cut(s) 753, 1105, 1332
FatI CATG 3 cut(s) 749, 1101, 1328
FauNDI CATATG 1 cut(s) 739
FbaI TGATCA 2 cut(s) 316, 577
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 5 cut(s) 276, 694, 697, 1377, 1380
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 1109
Fsp4HI GCNGC 5 cut(s) 276, 694, 697, 1377, 1380
FspBI CTAG 4 cut(s) 222, 542, 941, 1125
GlaI GCGC 3 cut(s) 11, 340, 1324
GluI GCNGC 5 cut(s) 276, 694, 697, 1377, 1380
GsaI CCCAGC 1 cut(s) 773
HaeII RGCGCY 2 cut(s) 13, 1326
HaeIII GGCC 3 cut(s) 133, 323, 1376
HapII CCGG 2 cut(s) 513, 918
HhaI GCGC 3 cut(s) 12, 341, 1325
Hin1I GRCGYC 2 cut(s) 10, 1131
Hin1II CATG 3 cut(s) 753, 1105, 1332
Hin6I GCGC 3 cut(s) 10, 339, 1323
HinP1I GCGC 3 cut(s) 10, 339, 1323
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 4 cut(s) 210, 461, 628, 949
HinfI GANTC 6 cut(s) 111, 179, 518, 536, 843, 884
HpaII CCGG 2 cut(s) 513, 918
HphI GGTGA 4 cut(s) 152, 527, 545, 842
Hpy166II GTNNAC 2 cut(s) 61, 703
Hpy188I TCNGA 6 cut(s) 39, 152, 184, 883, 1265, 1426
Hpy188III TCNNGA 5 cut(s) 95, 222, 863, 1102, 1402
Hpy8I GTNNAC 2 cut(s) 61, 703
Hpy99I CGWCG 1 cut(s) 1136
HpyAV CCTTC 4 cut(s) 427, 857, 1108, 1345
HpyCH4III ACNGT 2 cut(s) 1225, 1390
HpyCH4IV ACGT 4 cut(s) 825, 834, 1131, 1269
HpyCH4V TGCA 7 cut(s) 4, 81, 353, 527, 737, 985, 1359
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 4 cut(s) 257, 908, 1045, 1351
HpySE526I ACGT 4 cut(s) 825, 834, 1131, 1269
Hsp92I GRCGYC 2 cut(s) 10, 1131
Hsp92II CATG 3 cut(s) 753, 1105, 1332
HspAI GCGC 3 cut(s) 10, 339, 1323
KasI GGCGCC 1 cut(s) 9
Ksp22I TGATCA 2 cut(s) 316, 577
Kzo9I GATC 5 cut(s) 253, 316, 577, 798, 921
LmnI GCTCC 1 cut(s) 865
Lsp1109I GCAGC 2 cut(s) 683, 1391
LweI GCATC 4 cut(s) 17, 53, 296, 877
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 4 cut(s) 222, 542, 941, 1125
MaeII ACGT 4 cut(s) 825, 834, 1131, 1269
MaeIII GTNAC 3 cut(s) 609, 742, 1148
MalI GATC 5 cut(s) 255, 318, 579, 800, 923
MboI GATC 5 cut(s) 253, 316, 577, 798, 921
MboII GAAGA 7 cut(s) 197, 315, 475, 556, 799, 1018, 1355
MhlI GDGCHC 1 cut(s) 1109
MluCI AATT 1 cut(s) 1259
Mly113I GGCGCC 1 cut(s) 10
MmeI TCCRAC 2 cut(s) 17, 1404
MnlI CCTC 8 cut(s) 283, 400, 464, 467, 777, 925, 1259, 1267
MroXI GAANNNNTTC 2 cut(s) 213, 563
MseI TTAA 4 cut(s) 270, 426, 600, 956
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 696
MspI CCGG 2 cut(s) 513, 918
MspR9I CCNGG 4 cut(s) 443, 531, 590, 919
Mva1269I GAATGC 1 cut(s) 1359
MvaI CCWGG 3 cut(s) 443, 531, 590
MvnI CGCG 2 cut(s) 278, 341
MwoI GCNNNNNNNGC 1 cut(s) 551
NarI GGCGCC 1 cut(s) 10
NciI CCSGG 1 cut(s) 919
NcoI CCATGG 1 cut(s) 1328
NdeI CATATG 1 cut(s) 739
NdeII GATC 5 cut(s) 253, 316, 577, 798, 921
NlaIII CATG 3 cut(s) 753, 1105, 1332
NlaIV GGNNCC 1 cut(s) 11
NspI RCATGY 1 cut(s) 753
PagI TCATGA 1 cut(s) 1101
PceI AGGCCT 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 831
PctI GAATGC 1 cut(s) 1359
PdmI GAANNNNTTC 2 cut(s) 213, 563
PfeI GAWTC 6 cut(s) 111, 179, 518, 536, 843, 884
PfoI TCCNGGA 2 cut(s) 588, 917
PkrI GCNGC 5 cut(s) 277, 695, 698, 1378, 1381
PluTI GGCGCC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 1109
Psp1406I AACGTT 1 cut(s) 834
Psp6I CCWGG 3 cut(s) 441, 529, 588
PspFI CCCAGC 1 cut(s) 769
PspGI CCWGG 3 cut(s) 441, 529, 588
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 5 cut(s) 152, 248, 436, 451, 1332
RsaI GTAC 5 cut(s) 262, 363, 637, 981, 1300
RsaNI GTAC 5 cut(s) 261, 362, 636, 980, 1299
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 1109
SaqAI TTAA 4 cut(s) 270, 426, 600, 956
SatI GCNGC 5 cut(s) 276, 694, 697, 1377, 1380
Sau3AI GATC 5 cut(s) 253, 316, 577, 798, 921
Sau96I GGNCC 5 cut(s) 152, 248, 436, 451, 1332
ScrFI CCNGG 4 cut(s) 443, 531, 590, 919
SduI GDGCHC 1 cut(s) 1109
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 4 cut(s) 17, 53, 296, 877
SfcI CTRYAG 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 11
SinI GGWCC 5 cut(s) 152, 248, 436, 451, 1332
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 3 cut(s) 458, 625, 1402
SmoI CTYRAG 3 cut(s) 458, 625, 1402
Sse9I AATT 1 cut(s) 1259
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 7 cut(s) 30, 276, 341, 439, 694, 777, 1377
SspDI GGCGCC 1 cut(s) 9
SspI AATATT 1 cut(s) 685
SspMI CTAG 4 cut(s) 222, 542, 941, 1125
SstI GAGCTC 1 cut(s) 1109
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 4 cut(s) 441, 529, 588, 917
StyI CCWWGG 1 cut(s) 1328
TaaI ACNGT 2 cut(s) 1225, 1390
TaiI ACGT 4 cut(s) 828, 837, 1134, 1272
TaqI TCGA 5 cut(s) 667, 762, 797, 963, 1233
TasI AATT 1 cut(s) 1259
TauI GCSGC 3 cut(s) 278, 696, 1379
TfiI GAWTC 6 cut(s) 111, 179, 518, 536, 843, 884
Tru1I TTAA 4 cut(s) 270, 426, 600, 956
Tru9I TTAA 4 cut(s) 270, 426, 600, 956
TseI GCWGC 2 cut(s) 696, 1379
TspDTI ATGAA 5 cut(s) 212, 510, 1018, 1090, 1327
TspGWI ACGGA 1 cut(s) 623
VpaK11BI GGWCC 5 cut(s) 152, 248, 436, 451, 1332
XbaI TCTAGA 1 cut(s) 221
XceI RCATGY 1 cut(s) 753
XmiI GTMKAC 1 cut(s) 702
XmnI GAANNNNTTC 2 cut(s) 213, 563
XspI CTAG 4 cut(s) 222, 542, 941, 1125
ZraI GACGTC 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.