Rorug03G0198200

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002694
Physical Location & Seq
Reverse (-)
17415391 .. 17417703
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0198200.1

Sequence Viewer

Length: 321 bp
ATGGATACGTCAAACCCGTCTGTTTTTGTGAATGCAGAGCTGCTGCGGTTGTATGTTGGAAGGCAGGTTCGGGCGTTGATTCAGGTTGTGCAACTGGATGCTGGATCTGTCATTGGCAAATCTACTGATGAAATTCAGTTAATTGTAAAGGGCACCCCACCCTTTCCTCTTACAAAATTTGTTGAGGTCATAGGTATTGCTGACAGCGATAAATCTATCCAAGCTAGCATATGGAACAACTTTGGTGACACAATTGACACACATGCTTACAATCAGCTTTGCTTGCTCGCAAATGGAGAATTTAAGCACTTGTTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

106

Amino Acids

11.68

Weight (kDa)

5.13

Isoelectric Point (pI)

9.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rep_fac-A_3 PF08661 1 - 102 1.1e-20 Replication factor A protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 1 cut(s) 46
AclWI GGATC 1 cut(s) 112
AcsI RAATTY 3 cut(s) 132, 176, 299
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 3 cut(s) 40, 224, 277
AluI AGCT 3 cut(s) 40, 224, 277
AlwI GGATC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 40, 43
ApoI RAATTY 3 cut(s) 132, 176, 299
AsuHPI GGTGA 1 cut(s) 257
AsuNHI GCTAGC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 27, 30
BfaI CTAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 2 cut(s) 41, 44
BlsI GCNGC 2 cut(s) 42, 45
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 2 cut(s) 27, 30
BshNI GGYRCC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 228
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 99
BssMI GATC 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 226, 284, 288
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 27, 30
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BtsCI GGATG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 226, 284, 288
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 40, 224, 277
CviKI_1 RGCY 3 cut(s) 40, 224, 277
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
FaeI CATG 1 cut(s) 266
FaiI YATR 5 cut(s) 54, 191, 230, 232, 264
FatI CATG 1 cut(s) 262
FauNDI CATATG 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 41, 44
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 41, 44
FspBI CTAG 1 cut(s) 225
GluI GCNGC 2 cut(s) 41, 44
Hin1II CATG 1 cut(s) 266
HinfI GANTC 1 cut(s) 79
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 35, 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 50, 68, 80, 87
Lsp1109I GCAGC 2 cut(s) 27, 30
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 5 cut(s) 132, 141, 176, 252, 299
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 2 cut(s) 177, 178
MseI TTAA 2 cut(s) 140, 303
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeI CATATG 1 cut(s) 230
NdeII GATC 1 cut(s) 104
NheI GCTAGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 42, 45
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 104
SaqAI TTAA 2 cut(s) 140, 303
SatI GCNGC 2 cut(s) 41, 44
Sau3AI GATC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 155
SetI ASST 8 cut(s) 11, 42, 69, 87, 189, 196, 226, 279
SfaNI GCATC 1 cut(s) 88
Sse9I AATT 5 cut(s) 132, 141, 176, 252, 299
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 225
TaiI ACGT 1 cut(s) 11
TasI AATT 5 cut(s) 132, 141, 176, 252, 299
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 140, 303
Tru9I TTAA 2 cut(s) 140, 303
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 40, 43
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 144, 304
XapI RAATTY 3 cut(s) 132, 176, 299
XceI RCATGY 1 cut(s) 266
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.