Rh3BG205200

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002694
Physical Location & Seq
Forward (+)
18368373 .. 18369230
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG205200.1

Sequence Viewer

Length: 858 bp
ATGCAAAGGCGCCTACAGGAAAGGAGATGCGGAAGTCGGAGAGCATCAATATATATGGTCAACTTTAGTTCAGTTGTCTGCATATACAGAGTTCCTGAAAGCCTTGTGGGAATCAGTCCAAAAGCTATTAGGCCTGAAAAGGTCTCCATCGGACCTTATCACCACAGCAAGAGCAAGGAATCTGAAGAGACCAAAATGAAGTATTTTGAAGCTTTTCTCTCTAGAAAAAAGAGAGATGGTAGTGCTGGACCTGATCTAAGTACCTTGTTTAAAGCCGCGAGAAATATGGAGGCAGAAGCAAGAAGATGCTATGATGATCAGGCCATCGCTATGTCAAGCGCGGAGTTTGTTGCAATGATGGTACTTGATGGGTGCTTTATCATTGAGCTTTTCCTACAAGACCAAGAGGACAAACTCAAAGATGTTAAAGAGAAGGACCGCCTGGTTATGGACCTCCTCAAGCTTGAAAACCAACTGCCTTTCTTCGTCCTTGAAAGACTATTTAGCCTGTCCGGTGATTCATCTGCACCAGGTGATTCTCTAGCCTTGCTTGCCTTGAAGTTCTTCAATGTTTATGATCACAAAGTCCTGGATGATGTTAAACACTTGTTACACTTGTTTCACTCAAGCTTCCGTACCCCTTTATTATTAGAACGAGATAATACTCGATATCAGCTCTCTAATATTAGAAGCCGCTGCGTAGACTTACTTGGGGAAGCTGATGATGTAATGATTGCATATGTAACGACATGCCTATCAATCGACAGCCCAGCGACCGCAATGAGGTGCTTCCGTGCTTACTTGCAACCCCTTTTCTATTTGTTTGGGGGATCCTTGCATTCCTTTATCGTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

285

Amino Acids

32.64

Weight (kDa)

8.1

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 28 - 237 6.1e-46 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 702
AccII CGCG 2 cut(s) 278, 341
AciI CCGC 6 cut(s) 30, 276, 341, 439, 694, 777
AclWI GGATC 2 cut(s) 825, 838
AcuI CTGAAG 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 10
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 3 cut(s) 262, 363, 637
AfiI CCNNNNNNNGG 2 cut(s) 448, 783
AgsI TTSAA 5 cut(s) 209, 467, 494, 559, 568
AjnI CCWGG 3 cut(s) 441, 529, 588
AluBI AGCT 7 cut(s) 125, 212, 388, 463, 630, 676, 719
AluI AGCT 7 cut(s) 125, 212, 388, 463, 630, 676, 719
Alw26I GTCTC 2 cut(s) 148, 182
AlwI GGATC 2 cut(s) 825, 838
AoxI GGCC 2 cut(s) 131, 321
ApeKI GCWGC 1 cut(s) 696
Asp700I GAANNNNTTC 2 cut(s) 213, 563
AspLEI GCGC 2 cut(s) 12, 341
AspS9I GGNCC 4 cut(s) 152, 248, 436, 451
AsuHPI GGTGA 3 cut(s) 152, 527, 545
AvaII GGWCC 4 cut(s) 152, 248, 436, 451
BamHI GGATCC 1 cut(s) 830
BanI GGYRCC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 844
BbvI GCAGC 1 cut(s) 683
BccI CCATC 5 cut(s) 155, 230, 332, 352, 362
BciT130I CCWGG 3 cut(s) 443, 531, 590
BclI TGATCA 2 cut(s) 316, 577
BcoDI GTCTC 2 cut(s) 148, 182
BfaI CTAG 2 cut(s) 222, 542
BfmI CTRYAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 13
BisI GCNGC 3 cut(s) 276, 694, 697
BlsI GCNGC 3 cut(s) 277, 695, 698
Bme1390I CCNGG 3 cut(s) 443, 531, 590
Bme18I GGWCC 4 cut(s) 152, 248, 436, 451
BmgT120I GGNCC 4 cut(s) 152, 248, 436, 451
BmiI GGNNCC 2 cut(s) 11, 832
BmrFI CCNGG 3 cut(s) 443, 531, 590
BmsI GCATC 3 cut(s) 17, 53, 296
BpiI GAAGAC 1 cut(s) 844
BpuEI CTTGAG 2 cut(s) 443, 610
BsaHI GRCGYC 1 cut(s) 10
BsaI GGTCTC 2 cut(s) 148, 182
BsaWI WCCGGW 1 cut(s) 512
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 783
Bse3DI GCAATG 2 cut(s) 360, 786
BseBI CCWGG 3 cut(s) 443, 531, 590
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 2 cut(s) 448, 783
BseMI GCAATG 2 cut(s) 360, 786
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 683
BseYI CCCAGC 1 cut(s) 769
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 2 cut(s) 278, 341
Bsh1285I CGRYCG 1 cut(s) 777
BshFI GGCC 2 cut(s) 133, 323
BshNI GGYRCC 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 777
BsiSI CCGG 1 cut(s) 513
BslI CCNNNNNNNGG 2 cut(s) 448, 783
BsmAI GTCTC 2 cut(s) 148, 182
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 2 cut(s) 133, 323
Bso31I GGTCTC 2 cut(s) 148, 182
Bsp143I GATC 4 cut(s) 253, 316, 577, 830
BspACI CCGC 6 cut(s) 30, 276, 341, 439, 694, 777
BspANI GGCC 2 cut(s) 133, 323
BspFNI CGCG 2 cut(s) 278, 341
BspLI GGNNCC 2 cut(s) 11, 832
BspPI GGATC 2 cut(s) 825, 838
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 2 cut(s) 148, 182
BsrDI GCAATG 2 cut(s) 360, 786
BssMI GATC 4 cut(s) 253, 316, 577, 830
BssNI GRCGYC 1 cut(s) 10
Bst2UI CCWGG 3 cut(s) 443, 531, 590
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 598
BstFNI CGCG 2 cut(s) 278, 341
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 2 cut(s) 12, 341
BstKTI GATC 4 cut(s) 256, 319, 580, 833
BstMAI GTCTC 2 cut(s) 148, 182
BstMBI GATC 4 cut(s) 253, 316, 577, 830
BstMCI CGRYCG 1 cut(s) 777
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstNI CCWGG 3 cut(s) 443, 531, 590
BstNSI RCATGY 1 cut(s) 753
BstSCI CCNGG 3 cut(s) 441, 529, 588
BstSFI CTRYAG 1 cut(s) 14
BstUI CGCG 2 cut(s) 278, 341
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 1 cut(s) 830
BstYI RGATCY 1 cut(s) 830
BsuRI GGCC 2 cut(s) 133, 323
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 552
CfoI GCGC 2 cut(s) 12, 341
Cfr13I GGNCC 4 cut(s) 152, 248, 436, 451
CsiI ACCWGGT 1 cut(s) 529
Csp6I GTAC 3 cut(s) 261, 362, 636
CviAII CATG 1 cut(s) 750
CviQI GTAC 3 cut(s) 261, 362, 636
DdeI CTNAG 1 cut(s) 257
DinI GGCGCC 1 cut(s) 11
DpnI GATC 4 cut(s) 255, 318, 579, 832
DpnII GATC 4 cut(s) 253, 316, 577, 830
DraI TTTAAA 1 cut(s) 271
DraIII CACNNNGTG 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 133
Eco31I GGTCTC 2 cut(s) 148, 182
Eco32I GATATC 1 cut(s) 671
Eco47I GGWCC 4 cut(s) 152, 248, 436, 451
Eco57I CTGAAG 1 cut(s) 204
EcoRII CCWGG 3 cut(s) 441, 529, 588
EcoRV GATATC 1 cut(s) 671
EgeI GGCGCC 1 cut(s) 11
EheI GGCGCC 1 cut(s) 11
FaeI CATG 1 cut(s) 753
FatI CATG 1 cut(s) 749
FauNDI CATATG 1 cut(s) 739
FbaI TGATCA 2 cut(s) 316, 577
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 3 cut(s) 276, 694, 697
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 3 cut(s) 276, 694, 697
FspBI CTAG 2 cut(s) 222, 542
GlaI GCGC 2 cut(s) 11, 340
GluI GCNGC 3 cut(s) 276, 694, 697
GsaI CCCAGC 1 cut(s) 773
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 2 cut(s) 133, 323
HapII CCGG 1 cut(s) 513
HhaI GCGC 2 cut(s) 12, 341
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 1 cut(s) 753
Hin6I GCGC 2 cut(s) 10, 339
HinP1I GCGC 2 cut(s) 10, 339
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 3 cut(s) 210, 461, 628
HinfI GANTC 4 cut(s) 111, 179, 518, 536
HpaII CCGG 1 cut(s) 513
HphI GGTGA 3 cut(s) 152, 527, 545
Hpy166II GTNNAC 2 cut(s) 61, 703
Hpy188I TCNGA 3 cut(s) 39, 152, 184
Hpy188III TCNNGA 2 cut(s) 95, 222
Hpy8I GTNNAC 2 cut(s) 61, 703
HpyAV CCTTC 1 cut(s) 427
HpyCH4V TGCA 7 cut(s) 4, 81, 353, 527, 737, 805, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 753
HspAI GCGC 2 cut(s) 10, 339
KasI GGCGCC 1 cut(s) 9
Ksp22I TGATCA 2 cut(s) 316, 577
Kzo9I GATC 4 cut(s) 253, 316, 577, 830
Lsp1109I GCAGC 1 cut(s) 683
LweI GCATC 3 cut(s) 17, 53, 296
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 2 cut(s) 222, 542
MaeIII GTNAC 2 cut(s) 609, 742
MalI GATC 4 cut(s) 255, 318, 579, 832
MboI GATC 4 cut(s) 253, 316, 577, 830
MboII GAAGA 5 cut(s) 197, 315, 475, 556, 844
MflI RGATCY 1 cut(s) 830
Mly113I GGCGCC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 5 cut(s) 283, 400, 464, 467, 777
MroXI GAANNNNTTC 2 cut(s) 213, 563
MseI TTAA 3 cut(s) 270, 426, 600
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 696
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 3 cut(s) 443, 531, 590
Mva1269I GAATGC 1 cut(s) 838
MvaI CCWGG 3 cut(s) 443, 531, 590
MvnI CGCG 2 cut(s) 278, 341
MwoI GCNNNNNNNGC 1 cut(s) 551
NarI GGCGCC 1 cut(s) 10
NdeI CATATG 1 cut(s) 739
NdeII GATC 4 cut(s) 253, 316, 577, 830
NlaIII CATG 1 cut(s) 753
NlaIV GGNNCC 2 cut(s) 11, 832
NspI RCATGY 1 cut(s) 753
PceI AGGCCT 1 cut(s) 133
PctI GAATGC 1 cut(s) 838
PdmI GAANNNNTTC 2 cut(s) 213, 563
PfeI GAWTC 4 cut(s) 111, 179, 518, 536
PfoI TCCNGGA 1 cut(s) 588
PkrI GCNGC 3 cut(s) 277, 695, 698
PluTI GGCGCC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 441, 529, 588
PspFI CCCAGC 1 cut(s) 769
PspGI CCWGG 3 cut(s) 441, 529, 588
PspN4I GGNNCC 2 cut(s) 11, 832
PspPI GGNCC 4 cut(s) 152, 248, 436, 451
PsuI RGATCY 1 cut(s) 830
RsaI GTAC 3 cut(s) 262, 363, 637
RsaNI GTAC 3 cut(s) 261, 362, 636
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 3 cut(s) 270, 426, 600
SatI GCNGC 3 cut(s) 276, 694, 697
Sau3AI GATC 4 cut(s) 253, 316, 577, 830
Sau96I GGNCC 4 cut(s) 152, 248, 436, 451
ScrFI CCNGG 3 cut(s) 443, 531, 590
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 3 cut(s) 17, 53, 296
SfcI CTRYAG 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 11
SinI GGWCC 4 cut(s) 152, 248, 436, 451
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 458, 625
SmoI CTYRAG 2 cut(s) 458, 625
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 6 cut(s) 30, 276, 341, 439, 694, 777
SspDI GGCGCC 1 cut(s) 9
SspI AATATT 1 cut(s) 685
SspMI CTAG 2 cut(s) 222, 542
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 3 cut(s) 441, 529, 588
TaqI TCGA 2 cut(s) 667, 762
TauI GCSGC 2 cut(s) 278, 696
TfiI GAWTC 4 cut(s) 111, 179, 518, 536
Tru1I TTAA 3 cut(s) 270, 426, 600
Tru9I TTAA 3 cut(s) 270, 426, 600
TseI GCWGC 1 cut(s) 696
TspDTI ATGAA 2 cut(s) 212, 510
TspGWI ACGGA 2 cut(s) 623, 782
VpaK11BI GGWCC 4 cut(s) 152, 248, 436, 451
XbaI TCTAGA 1 cut(s) 221
XceI RCATGY 1 cut(s) 753
XmiI GTMKAC 1 cut(s) 702
XmnI GAANNNNTTC 2 cut(s) 213, 563
XspI CTAG 2 cut(s) 222, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.