Rh3CG202300

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002694
Physical Location & Seq
Forward (+)
18296089 .. 18309630
13542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG202300.1

Sequence Viewer

Length: 582 bp
ATGGAGGCAGAAGCAAGAAGATGCTATGATGATCAGGCCATCGCTATGTCAAGCGCGGAGTTTGTTGCAATGATGGTACTTGATGGGTGCTTTATCATTGAGCTTTTCCTACAAGACCAAGAGGACAAACTCAAAGATGTTAAAGAGAAGGACCGCCTGGTTATGGACCTCCTCAAGCTTGAAAACCAACTGCCTTTCTTCGTCCTTGAAAGACTATTTAGCCTGTCCGGTGATTCATCTGCACCAGGTGATTCTCTAGCCTTGCTTGCCTTGAAGTTCTTCAATGTTTATGATCACAAAGTCCTGGATGATGTTAAACACTTGTTACACTTGTTTCACTCAAGCTTCCGTACCCCTTTATTATTAGAACGAGATAATACTCGATATCAGCTCTCTAATATTAGAAGCCGCTGCGTAGACTTACTTGGGGAAGCTGATGATGTAATGATTGCATATGTAACGACATGCCTATCAATCGACAGCCCAGCGACCGCAATGAGACTGTTTGTAGCATGGAAAGCTTATTTCTCTTTTGAAAGTCCATCCAATCCTAAAGCAACTTTACCTAAAGCTGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

193

Amino Acids

21.95

Weight (kDa)

5.09

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 142 1.7e-27 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 56
AciI CCGC 4 cut(s) 56, 154, 409, 492
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 78, 352
AfiI CCNNNNNNNGG 2 cut(s) 163, 572
AgsI TTSAA 5 cut(s) 182, 209, 274, 283, 536
AjnI CCWGG 3 cut(s) 156, 244, 303
AluBI AGCT 7 cut(s) 103, 178, 345, 391, 434, 521, 572
AluI AGCT 7 cut(s) 103, 178, 345, 391, 434, 521, 572
Alw26I GTCTC 1 cut(s) 493
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 151, 166
AsuHPI GGTGA 2 cut(s) 242, 260
AvaII GGWCC 2 cut(s) 151, 166
BbvI GCAGC 1 cut(s) 398
BccI CCATC 4 cut(s) 47, 67, 77, 550
BciT130I CCWGG 3 cut(s) 158, 246, 305
BclI TGATCA 2 cut(s) 31, 292
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 2 cut(s) 257, 580
BisI GCNGC 2 cut(s) 409, 412
BlsI GCNGC 2 cut(s) 410, 413
Bme1390I CCNGG 3 cut(s) 158, 246, 305
Bme18I GGWCC 2 cut(s) 151, 166
BmgT120I GGNCC 2 cut(s) 151, 166
BmrFI CCNGG 3 cut(s) 158, 246, 305
BmsI GCATC 1 cut(s) 11
BpuEI CTTGAG 2 cut(s) 158, 325
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 572
Bse3DI GCAATG 2 cut(s) 75, 501
BseBI CCWGG 3 cut(s) 158, 246, 305
BseGI GGATG 2 cut(s) 313, 542
BseLI CCNNNNNNNGG 2 cut(s) 163, 572
BseMI GCAATG 2 cut(s) 75, 501
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 484
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 492
BshFI GGCC 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 163, 572
BsmAI GTCTC 1 cut(s) 493
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 31, 292
BspACI CCGC 4 cut(s) 56, 154, 409, 492
BspANI GGCC 1 cut(s) 38
BspFNI CGCG 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 75, 501
BssMI GATC 2 cut(s) 31, 292
Bst2UI CCWGG 3 cut(s) 158, 246, 305
Bst4CI ACNGT 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 267
BstF5I GGATG 2 cut(s) 313, 542
BstFNI CGCG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 34, 295
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 2 cut(s) 31, 292
BstMCI CGRYCG 1 cut(s) 492
BstMWI GCNNNNNNNGC 2 cut(s) 266, 518
BstNI CCWGG 3 cut(s) 158, 246, 305
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 3 cut(s) 156, 244, 303
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 398
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 313, 542
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 151, 166
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 2 cut(s) 77, 351
CviAII CATG 2 cut(s) 465, 513
CviQI GTAC 2 cut(s) 77, 351
DpnI GATC 2 cut(s) 33, 294
DpnII GATC 2 cut(s) 31, 292
DraIII CACNNNGTG 1 cut(s) 248
Eco32I GATATC 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 151, 166
EcoRII CCWGG 3 cut(s) 156, 244, 303
EcoRV GATATC 1 cut(s) 386
FaeI CATG 2 cut(s) 468, 516
FaiI YATR 8 cut(s) 27, 47, 164, 291, 454, 456, 466, 514
FatI CATG 2 cut(s) 464, 512
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 2 cut(s) 31, 292
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 409, 412
FokI GGATG 2 cut(s) 320, 529
Fsp4HI GCNGC 2 cut(s) 409, 412
FspBI CTAG 2 cut(s) 257, 580
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 409, 412
GsaI CCCAGC 1 cut(s) 488
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 56
Hin1II CATG 2 cut(s) 468, 516
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HindIII AAGCTT 3 cut(s) 176, 343, 519
HinfI GANTC 2 cut(s) 233, 251
HpaII CCGG 1 cut(s) 228
HphI GGTGA 2 cut(s) 242, 260
Hpy166II GTNNAC 1 cut(s) 418
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4V TGCA 3 cut(s) 68, 242, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 518
Hsp92II CATG 2 cut(s) 468, 516
HspAI GCGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 31, 292
Kzo9I GATC 2 cut(s) 31, 292
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 1 cut(s) 11
MabI ACCWGGT 1 cut(s) 244
MaeI CTAG 2 cut(s) 257, 580
MaeIII GTNAC 3 cut(s) 324, 457, 575
MalI GATC 2 cut(s) 33, 294
MboI GATC 2 cut(s) 31, 292
MboII GAAGA 3 cut(s) 30, 190, 271
MnlI CCTC 3 cut(s) 115, 179, 182
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 2 cut(s) 141, 315
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 411
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 3 cut(s) 158, 246, 305
MvaI CCWGG 3 cut(s) 158, 246, 305
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 266, 518
NdeI CATATG 1 cut(s) 454
NdeII GATC 2 cut(s) 31, 292
NlaIII CATG 2 cut(s) 468, 516
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 233, 251
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 2 cut(s) 410, 413
Psp6I CCWGG 3 cut(s) 156, 244, 303
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 3 cut(s) 156, 244, 303
PspPI GGNCC 2 cut(s) 151, 166
RsaI GTAC 2 cut(s) 78, 352
RsaNI GTAC 2 cut(s) 77, 351
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 2 cut(s) 141, 315
SatI GCNGC 2 cut(s) 409, 412
Sau3AI GATC 2 cut(s) 31, 292
Sau96I GGNCC 2 cut(s) 151, 166
ScrFI CCNGG 3 cut(s) 158, 246, 305
SexAI ACCWGGT 1 cut(s) 244
SfaNI GCATC 1 cut(s) 11
SinI GGWCC 2 cut(s) 151, 166
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 173, 340
SmoI CTYRAG 2 cut(s) 173, 340
SsiI CCGC 4 cut(s) 56, 154, 409, 492
SspI AATATT 1 cut(s) 400
SspMI CTAG 2 cut(s) 257, 580
StyD4I CCNGG 3 cut(s) 156, 244, 303
TaaI ACNGT 1 cut(s) 504
TaqI TCGA 2 cut(s) 382, 477
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 2 cut(s) 233, 251
Tru1I TTAA 2 cut(s) 141, 315
Tru9I TTAA 2 cut(s) 141, 315
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 1 cut(s) 411
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 151, 166
XceI RCATGY 1 cut(s) 468
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 2 cut(s) 257, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.