Rh3CG202400

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002694
Physical Location & Seq
Forward (+)
18311515 .. 18324741
13227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG202400.1

Sequence Viewer

Length: 777 bp
ATGGAGGCAGAAGCAAGAAGATGCTATGATGATCAGGCCATCGCTATGTCAAGCGCGGAGTTTGTTGCAATGATGGTACTTGATGGGTGCTTTATCATTGAGCTTTTCCTACAAGACCAAGAGGACAAACTCAAAGATGTTAAAGAGAAGGACCGCCTGGTTATGGACCTCCTCAAGCTTGAAAACCAACTGCCTTTCTTCGTCCTTGAAAGACTATTTAGCCTGTCCGGTGATTCATCTGCACCAGGTGATTCTCTAGCCTTGCTTGCCTTGAAGTTCTTCAATGTTTATGATCACAAAGTCCTGGATGATGTTAAACACTTGTTACACTTGTTTCACTCAAGCTTCCGTACCCCTTTATTATTAGAACGAGATAATACTCGATATCAGCTCTCTAATATTAGAAGCCGCTGCGTAGACTTACTTGGGGAAGCTGATGATGTAATGATTGCATATGTAACGACATGCCTATCAATCGACAGCCCAGCGACCGCAATGAGCTTCTCACACAACGACCATAGCATAGCTGACCTGTTGAACAAGTTAGGGAAAACAGTTTATTTCGACAAGGATTGCTACCTCTCCAAGCAATTCAGAGACGTGGAGGCTTATTACAACAGCCATTGGGTAGTCATTAGTAAAGTAGTGTTTGCCTACATTGACGATGATAGCAACGAAGCAAAGATTATTAGGTCGATCGAAGTTGTTGGGGTAATACCTGCTATAAATACCAATGAGGCAATGACCTCATTATTACCGTCTTCATCAACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

258

Amino Acids

29.22

Weight (kDa)

4.79

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 142 5.4e-27 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 56
AciI CCGC 4 cut(s) 56, 154, 409, 492
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 78, 352
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 5 cut(s) 182, 209, 274, 283, 538
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 3 cut(s) 156, 244, 303
AluBI AGCT 7 cut(s) 103, 178, 345, 391, 434, 501, 527
AluI AGCT 7 cut(s) 103, 178, 345, 391, 434, 501, 527
Alw26I GTCTC 1 cut(s) 591
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 151, 166
AsuHPI GGTGA 2 cut(s) 242, 260
AvaII GGWCC 2 cut(s) 151, 166
BbsI GAAGAC 1 cut(s) 753
BbvI GCAGC 1 cut(s) 398
BccI CCATC 3 cut(s) 47, 67, 77
BciT130I CCWGG 3 cut(s) 158, 246, 305
BclI TGATCA 2 cut(s) 31, 292
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 2 cut(s) 409, 412
BlsI GCNGC 2 cut(s) 410, 413
Bme1390I CCNGG 3 cut(s) 158, 246, 305
Bme18I GGWCC 2 cut(s) 151, 166
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 151, 166
BmrFI CCNGG 3 cut(s) 158, 246, 305
BmsI GCATC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 753
BpuEI CTTGAG 2 cut(s) 158, 325
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse3DI GCAATG 3 cut(s) 75, 501, 747
BseBI CCWGG 3 cut(s) 158, 246, 305
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 3 cut(s) 75, 501, 747
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 484
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 2 cut(s) 492, 699
BshFI GGCC 1 cut(s) 38
BsiEI CGRYCG 2 cut(s) 492, 699
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 591
BsmBI CGTCTC 1 cut(s) 591
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 3 cut(s) 31, 292, 696
BspACI CCGC 4 cut(s) 56, 154, 409, 492
BspANI GGCC 1 cut(s) 38
BspFNI CGCG 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 727
BsrDI GCAATG 3 cut(s) 75, 501, 747
BssMI GATC 3 cut(s) 31, 292, 696
Bst2UI CCWGG 3 cut(s) 158, 246, 305
Bst4CI ACNGT 2 cut(s) 556, 759
BstC8I GCNNGC 1 cut(s) 267
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 3 cut(s) 34, 295, 699
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 3 cut(s) 31, 292, 696
BstMCI CGRYCG 2 cut(s) 492, 699
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 3 cut(s) 158, 246, 305
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 3 cut(s) 156, 244, 303
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 753
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 25
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 1 cut(s) 313
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 151, 166
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 2 cut(s) 77, 351
CviAII CATG 1 cut(s) 465
CviQI GTAC 2 cut(s) 77, 351
DpnI GATC 3 cut(s) 33, 294, 698
DpnII GATC 3 cut(s) 31, 292, 696
DraIII CACNNNGTG 1 cut(s) 248
Eco32I GATATC 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 151, 166
EcoRII CCWGG 3 cut(s) 156, 244, 303
EcoRV GATATC 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 591
FaeI CATG 1 cut(s) 468
FatI CATG 1 cut(s) 464
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 2 cut(s) 31, 292
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 409, 412
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 409, 412
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 409, 412
GsaI CCCAGC 1 cut(s) 488
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 468
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HindIII AAGCTT 2 cut(s) 176, 343
HinfI GANTC 2 cut(s) 233, 251
HpaII CCGG 1 cut(s) 228
HphI GGTGA 2 cut(s) 242, 260
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 596
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 556, 759
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 4 cut(s) 68, 242, 452, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 1 cut(s) 468
HspAI GCGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 31, 292
Kzo9I GATC 3 cut(s) 31, 292, 696
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 1 cut(s) 11
MabI ACCWGGT 1 cut(s) 244
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 2 cut(s) 324, 457
MalI GATC 3 cut(s) 33, 294, 698
MboI GATC 3 cut(s) 31, 292, 696
MboII GAAGA 4 cut(s) 30, 190, 271, 753
MluCI AATT 1 cut(s) 590
MnlI CCTC 7 cut(s) 115, 179, 182, 590, 598, 730, 757
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 2 cut(s) 141, 315
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 411
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 3 cut(s) 158, 246, 305
MvaI CCWGG 3 cut(s) 158, 246, 305
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeI CATATG 1 cut(s) 454
NdeII GATC 3 cut(s) 31, 292, 696
NlaIII CATG 1 cut(s) 468
NspI RCATGY 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 233, 251
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 2 cut(s) 410, 413
Ple19I CGATCG 1 cut(s) 699
Psp6I CCWGG 3 cut(s) 156, 244, 303
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 3 cut(s) 156, 244, 303
PspPI GGNCC 2 cut(s) 151, 166
PvuI CGATCG 1 cut(s) 699
RsaI GTAC 2 cut(s) 78, 352
RsaNI GTAC 2 cut(s) 77, 351
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 2 cut(s) 141, 315
SatI GCNGC 2 cut(s) 409, 412
Sau3AI GATC 3 cut(s) 31, 292, 696
Sau96I GGNCC 2 cut(s) 151, 166
ScrFI CCNGG 3 cut(s) 158, 246, 305
SexAI ACCWGGT 1 cut(s) 244
SfaNI GCATC 1 cut(s) 11
SinI GGWCC 2 cut(s) 151, 166
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 173, 340
SmoI CTYRAG 2 cut(s) 173, 340
Sse9I AATT 1 cut(s) 590
SsiI CCGC 4 cut(s) 56, 154, 409, 492
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 156, 244, 303
TaaI ACNGT 2 cut(s) 556, 759
TaiI ACGT 1 cut(s) 603
TaqI TCGA 5 cut(s) 382, 477, 564, 695, 699
TasI AATT 1 cut(s) 590
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 2 cut(s) 233, 251
Tru1I TTAA 2 cut(s) 141, 315
Tru9I TTAA 2 cut(s) 141, 315
TseI GCWGC 1 cut(s) 411
TspDTI ATGAA 2 cut(s) 225, 753
TspGWI ACGGA 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 151, 166
XceI RCATGY 1 cut(s) 468
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.