Rh3AG179000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002694
Physical Location & Seq
Forward (+)
16758093 .. 16758431
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG179000.1

Sequence Viewer

Length: 339 bp
ATGAGCTCTCTCATCAATACCCCTAGAGACGTCGCATTGCTTTCTGGTAACGGGATTATCATTACCAGCTTCTCACACAACGACCATAGCATAGCTGACCTGTTGAACAAGTTAGGGAAAACAGTTTATTTCGACAAGGATTGCTACCTCTCCAAGCAATTCAGAGACGTGGAGGCTTATTACAACAGCCATTGGGGTACTTTTCTACGAACTTATTTTAGCGCCCCATGGTCCTTCATTTCAGTTGTCTCAGCCTGCATTCTTCTTTTGCTGGCCGCAGCTCAAACAGTTGTGTCTATCTTGAGCTATATCAAACAAATGTCGGACAAGGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

112

Amino Acids

12.53

Weight (kDa)

8.58

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 91 1.2e-22 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AciI CCGC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 1 cut(s) 106
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 5 cut(s) 6, 69, 95, 281, 306
AluI AGCT 5 cut(s) 6, 69, 95, 281, 306
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 21, 159, 253
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 231
AvaII GGWCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 290
BcoDI GTCTC 3 cut(s) 21, 159, 253
BfaI CTAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 2 cut(s) 276, 279
BlsI GCNGC 2 cut(s) 277, 280
Bme18I GGWCC 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 290
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 8
BsmAI GTCTC 3 cut(s) 21, 159, 253
BsmBI CGTCTC 2 cut(s) 21, 159
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 227
BspACI CCGC 1 cut(s) 276
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 227
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 124, 289
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 256, 273
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstMAI GTCTC 3 cut(s) 21, 159, 253
BstV1I GCAGC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 227
BtrI CACGTC 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 256, 273
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 198
CviAII CATG 1 cut(s) 228
CviJI RGCY 9 cut(s) 6, 69, 95, 176, 189, 254, 275, 281, 306
CviKI_1 RGCY 9 cut(s) 6, 69, 95, 176, 189, 254, 275, 281, 306
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 227
Esp3I CGTCTC 2 cut(s) 21, 159
FaeI CATG 1 cut(s) 231
FaiI YATR 4 cut(s) 87, 92, 229, 309
FatI CATG 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 276, 279
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 276, 279
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 223
GluI GCNGC 2 cut(s) 276, 279
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 275
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 231
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 164, 325
Hpy188III TCNNGA 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 124, 289
HpyCH4IV ACGT 2 cut(s) 30, 168
HpyCH4V TGCA 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 2 cut(s) 30, 168
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 231
HspAI GCGC 1 cut(s) 222
LpnPI CCDG 5 cut(s) 30, 79, 113, 257, 268
Lsp1109I GCAGC 1 cut(s) 290
MaeI CTAG 1 cut(s) 24
MaeII ACGT 2 cut(s) 30, 168
MaeIII GTNAC 1 cut(s) 47
MboII GAAGA 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 2 cut(s) 158, 166
Mva1269I GAATGC 1 cut(s) 258
NcoI CCATGG 1 cut(s) 227
NlaIII CATG 1 cut(s) 231
PctI GAATGC 1 cut(s) 258
PkrI GCNGC 2 cut(s) 277, 280
Psp124BI GAGCTC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 276, 279
Sau96I GGNCC 1 cut(s) 231
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 33, 71, 97, 102, 150, 171, 283, 308
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 1 cut(s) 158
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 2 cut(s) 124, 289
TaiI ACGT 2 cut(s) 33, 171
TaqI TCGA 1 cut(s) 132
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 278
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 231
XspI CTAG 1 cut(s) 24
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.