Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000585

Physical Location & Seq

Genomic Coordinates Reverse (-)

36212600 .. 36213088

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCATCTGCTTTCTTGGACGGCAAGGATCCATCCGAAAAATCATTCGGTGATCTATTTGAGAATTCAAAGAACTCAGCGTACCTAGAATGGTTGAACTCGATGCCGAAAGAATCTGTCATCTACATATCGTTTGGGAGCATTTCCATGCTGTCCAAGATTCAAATGGAGGAAATTGCAAAAGGGTTGTTGAATTCTGGTCGTCCGTTTCTGTGGGTGATTAGAGAAAACCAAAAGAATGGAGAAGGTAAGGAAGAGAAAGAAGAAGACAAACTGAGTTGCAGAGAGGAACTAGAAGAGCTTGGGATGATAGTCCCGTGGTGTAGTCAACTGGAGGTTCTGTCAAATCCTTCATTAGGTTGTTTTGTAACACACACTGGCTGGAATTCAAGCTTGGAGAGTTTGGTTTCTGGGGTACCAGTGGTAGCATTTATGTTAAAAACCATATACATGCTCACAATATATGCACACAATCATAAAAGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

162

Amino Acids

18.31

Weight (kDa)

5.05

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	30 - 144	2.6e-16	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15550
fragaria_vesca	FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica	MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica	Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis	pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis	RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata	RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora	Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii	Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa	Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha	Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana	Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	415
AclWI	GGATC	2 cut(s)	23, 36
AcsI	RAATTY	3 cut(s)	64, 193, 385
AfaI	GTAC	2 cut(s)	83, 417
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	5 cut(s)	69, 97, 164, 193, 390
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	2 cut(s)	301, 393
AluI	AGCT	2 cut(s)	301, 393
AlwI	GGATC	2 cut(s)	23, 36
ApoI	RAATTY	3 cut(s)	64, 193, 385
Asp718I	GGTACC	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	62, 229
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	2 cut(s)	13, 40
BceAI	ACGGC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	86, 293
BmiI	GGNNCC	2 cut(s)	30, 417
BmsI	GCATC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	336, 382, 419
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	32, 312
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	90, 266
BseNI	ACTGG	3 cut(s)	336, 382, 419
BshNI	GGYRCC	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	28, 52
BspCNI	CTCAG	2 cut(s)	89, 267
BspLI	GGNNCC	2 cut(s)	30, 417
BspPI	GGATC	2 cut(s)	23, 36
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	336, 382, 419
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	2 cut(s)	28, 52
Bst6I	CTCTTC	2 cut(s)	249, 291
BstDEI	CTNAG	2 cut(s)	76, 275
BstDSI	CCRYGG	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	32, 312
BstKTI	GATC	2 cut(s)	31, 55
BstMBI	GATC	2 cut(s)	28, 52
BstNSI	RCATGY	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	32, 312
BtsIMutI	CAGTG	2 cut(s)	375, 426
Csp6I	GTAC	2 cut(s)	82, 416
CviAII	CATG	2 cut(s)	148, 451
CviJI	RGCY	3 cut(s)	301, 381, 393
CviKI_1	RGCY	3 cut(s)	301, 381, 393
CviQI	GTAC	2 cut(s)	82, 416
DdeI	CTNAG	2 cut(s)	76, 275
DpnI	GATC	2 cut(s)	30, 54
DpnII	GATC	2 cut(s)	28, 52
Eam1104I	CTCTTC	2 cut(s)	249, 291
EarI	CTCTTC	2 cut(s)	249, 291
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoRI	GAATTC	3 cut(s)	64, 193, 385
FaeI	CATG	2 cut(s)	151, 454
FaiI	YATR	9 cut(s)	128, 149, 434, 446, 448, 452, 463, 465, 477
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	147, 450
FokI	GGATG	2 cut(s)	19, 319
FspBI	CTAG	2 cut(s)	86, 293
GsuI	CTGGAG	1 cut(s)	353
Hin1II	CATG	2 cut(s)	151, 454
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	2 cut(s)	113, 160
HphI	GGTGA	2 cut(s)	62, 229
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	239, 360
HpyCH4V	TGCA	3 cut(s)	179, 282, 467
HpyF3I	CTNAG	2 cut(s)	76, 275
Hsp92II	CATG	2 cut(s)	151, 454
KpnI	GGTACC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	28, 52
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	6 cut(s)	183, 317, 363, 367, 396, 432
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	2 cut(s)	86, 293
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	30, 54
MboI	GATC	2 cut(s)	28, 52
MboII	GAAGA	4 cut(s)	266, 275, 278, 308
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	4 cut(s)	64, 174, 193, 385
MnlI	CCTC	3 cut(s)	163, 280, 328
MseI	TTAA	2 cut(s)	437, 487
MslI	CAYNNNNRTG	2 cut(s)	146, 449
NdeII	GATC	2 cut(s)	28, 52
NlaIII	CATG	2 cut(s)	151, 454
NlaIV	GGNNCC	2 cut(s)	30, 417
NspI	RCATGY	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	113, 160
PspN4I	GGNNCC	2 cut(s)	30, 417
PsrI	GAACNNNNNNTAC	2 cut(s)	65, 97
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	2 cut(s)	83, 417
RsaNI	GTAC	2 cut(s)	82, 416
RseI	CAYNNNNRTG	2 cut(s)	146, 449
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	437, 487
Sau3AI	GATC	2 cut(s)	28, 52
SetI	ASST	6 cut(s)	87, 250, 303, 339, 361, 395
SfaNI	GCATC	1 cut(s)	93
SmiMI	CAYNNNNRTG	2 cut(s)	146, 449
Sse9I	AATT	4 cut(s)	64, 174, 193, 385
SspMI	CTAG	2 cut(s)	86, 293
TaqI	TCGA	1 cut(s)	101
TasI	AATT	4 cut(s)	64, 174, 193, 385
TfiI	GAWTC	2 cut(s)	113, 160
Tru1I	TTAA	2 cut(s)	437, 487
Tru9I	TTAA	2 cut(s)	437, 487
TscAI	CASTG	2 cut(s)	382, 426
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	382, 426
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	3 cut(s)	64, 193, 385
XceI	RCATGY	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	2 cut(s)	86, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.