Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000585

Physical Location & Seq

Genomic Coordinates Reverse (-)

36287269 .. 36287879

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAGAAACAGTGCCACGGCTAGTAATAGTGACCCTTCCCATGTAGAATTACCAGGACTGCCACTAGCGCTGAAGAGCCGCGACCTGCCCTCCTTCATGGTGGATTCGAATCCGTACAATTTCGCTCTCCCATTGATCGAAGAACAGTTCGAGCTGCTACGAAAAGAAAGCAAGCCAACCATCCTGGTGATTGGTGAACACGTTCGATGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

71

Amino Acids

7.92

Weight (kDa)

5.53

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15550
fragaria_vesca	FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica	MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica	Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis	pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis	RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata	RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora	Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii	Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa	Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha	Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana	Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	116
AfeI	AGCGCT	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	52, 183
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Aor51HI	AGCGCT	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	199, 206
AsuII	TTCGAA	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	54, 185
BfaI	CTAG	2 cut(s)	21, 65
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	79, 155
BlsI	GCNGC	2 cut(s)	80, 156
Bme1390I	CCNGG	2 cut(s)	54, 185
BmrFI	CCNGG	2 cut(s)	54, 185
BmsI	GCATC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	54, 185
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	68
BspT104I	TTCGAA	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	54, 185
Bst4CI	ACNGT	2 cut(s)	11, 147
Bst6I	CTCTTC	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	54, 185
BstSCI	CCNGG	2 cut(s)	52, 183
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	41, 97
CviJI	RGCY	4 cut(s)	20, 78, 154, 175
CviKI_1	RGCY	4 cut(s)	20, 78, 154, 175
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco47III	AGCGCT	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	52, 183
FaeI	CATG	2 cut(s)	44, 100
FaiI	YATR	2 cut(s)	42, 98
FatI	CATG	2 cut(s)	40, 96
Fnu4HI	GCNGC	2 cut(s)	79, 155
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	79, 155
FspBI	CTAG	2 cut(s)	21, 65
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	79, 155
HaeII	RGCGCY	1 cut(s)	71
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	44, 100
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	2 cut(s)	104, 109
HphI	GGTGA	2 cut(s)	199, 206
Hpy166II	GTNNAC	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	45, 103
HpyCH4III	ACNGT	2 cut(s)	11, 147
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	44, 100
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	135
LguI	GCTCTTC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	39, 66, 98, 170, 197
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	2 cut(s)	21, 65
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	2 cut(s)	85, 152
MluCI	AATT	2 cut(s)	47, 118
MnlI	CCTC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	54, 185
MvaI	CCWGG	2 cut(s)	54, 185
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	44, 100
NmuCI	GTSAC	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	104, 109
PkrI	GCNGC	2 cut(s)	80, 156
Psp6I	CCWGG	2 cut(s)	52, 183
PspGI	CCWGG	2 cut(s)	52, 183
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	68
SatI	GCNGC	2 cut(s)	79, 155
Sau3AI	GATC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	54, 185
SetI	ASST	3 cut(s)	87, 156, 204
SfaNI	GCATC	1 cut(s)	197
SfuI	TTCGAA	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	47, 118
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	2 cut(s)	21, 65
StyD4I	CCNGG	2 cut(s)	52, 183
TaaI	ACNGT	2 cut(s)	11, 147
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	107, 138, 150, 205
TasI	AATT	2 cut(s)	47, 118
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	104, 109
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	2 cut(s)	21, 65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.