Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000585

Physical Location & Seq

Genomic Coordinates Forward (+)

28557847 .. 28558629

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGAAACAGTGCCACGGCTAGTAATAGTGACCCTTCCCATGCAGTAGAATTACCAGGACTGCCACTAGCGCTGAAGAGCCGCGACCTGCCCTCCGTCATGGTGGATTCGAATCCGTACAATTTCGCTCTCTCATTGTTCGAAGAACACTTCGAGCTGCTACGAAAAGAAAGCAAGCCAACCATCCTGGTGAACACGTTCGACGCACTTGAGCCGGAGGCGTTAAAAGCAATTGACAAGTTCAACTTGATCGGAATCGGGCCATTAATGCCATCTGCTTTCTTGGACGGCAAGGATCCATCCGATAAATCATTCGGTGATCTATTCGAGAATTCAAAGAACTCAGCGTACCTAGAATGGTTGAACTCGAAGCCGAAAGAATCTGTCATCTACGTTCCGTTTGGGAGCATTTCCGTGCTGTCCAAGATTCAAATGGAGGAAATTGCAAAGGGGTTGTTGAATTCTGGTCGTCCGTTTCTGTGGGTGATTAGAGAAAACCAAAAGAACGGAGAAGGTAAGGAAGAGAAAGAAGAACACAATCTGAGTTGCAGAGAGGAACTAGAAGAGCTTGGGATGATAGTCCCGTGGTGTAGTCAAGTGGAGGTTCTGTCAAATCCTTCATTAGGTTGTTTTGTAACACACTGTGGCTGGAATTCAAGCTTGGAGAGTTTGGTAGAGTTTCCTCAGTGGATAGAGGACACTTGGAAGACAGGAGTGAGGATAGCACCGAATGAGGAGGGTGTTGTTTTGGGTGAGGTGTTTGGATTTGGTGATGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

261

Amino Acids

28.91

Weight (kDa)

4.72

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	118 - 225	5.3e-11	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15550
fragaria_vesca	FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica	MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica	Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis	pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis	RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata	RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora	Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii	Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa	Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha	Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana	Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccII	CGCG	1 cut(s)	84
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	2 cut(s)	290, 303
AcsI	RAATTY	3 cut(s)	331, 460, 652
AcuI	CTGAAG	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	644
AfaI	GTAC	2 cut(s)	119, 350
AfeI	AGCGCT	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	6 cut(s)	244, 336, 364, 431, 460, 657
AjnI	CCWGG	2 cut(s)	55, 186
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	3 cut(s)	157, 568, 660
AluI	AGCT	3 cut(s)	157, 568, 660
AlwI	GGATC	2 cut(s)	290, 303
Aor51HI	AGCGCT	1 cut(s)	72
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	3 cut(s)	331, 460, 652
AseI	ATTAAT	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	5 cut(s)	202, 329, 496, 764, 782
AsuII	TTCGAA	2 cut(s)	110, 141
BamHI	GGATCC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	713
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	4 cut(s)	191, 280, 307, 767
BceAI	ACGGC	2 cut(s)	33, 304
BciT130I	CCWGG	2 cut(s)	57, 188
BfaI	CTAG	4 cut(s)	21, 68, 353, 560
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	82, 158
BlsI	GCNGC	2 cut(s)	83, 159
Bme1390I	CCNGG	2 cut(s)	57, 188
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	2 cut(s)	57, 188
BpiI	GAAGAC	1 cut(s)	713
Bpu14I	TTCGAA	2 cut(s)	110, 141
BpuEI	CTTGAG	1 cut(s)	230
BsaBI	GATNNNNATC	2 cut(s)	111, 254
BsaJI	CCNNGG	2 cut(s)	15, 584
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse8I	GATNNNNATC	2 cut(s)	111, 254
BseBI	CCWGG	2 cut(s)	57, 188
BseDI	CCNNGG	2 cut(s)	15, 584
BseGI	GGATG	3 cut(s)	183, 299, 579
BseJI	GATNNNNATC	2 cut(s)	111, 254
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	3 cut(s)	357, 533, 698
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	262
Bsp119I	TTCGAA	2 cut(s)	110, 141
Bsp143I	GATC	3 cut(s)	249, 295, 319
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	3 cut(s)	356, 534, 697
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	290, 303
BspQI	GCTCTTC	2 cut(s)	71, 558
BspT104I	TTCGAA	2 cut(s)	110, 141
BssECI	CCNNGG	2 cut(s)	15, 584
BssMI	GATC	3 cut(s)	249, 295, 319
Bst2UI	CCWGG	2 cut(s)	57, 188
Bst4CI	ACNGT	2 cut(s)	11, 644
Bst6I	CTCTTC	3 cut(s)	71, 516, 558
BstBI	TTCGAA	2 cut(s)	110, 141
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	3 cut(s)	343, 542, 684
BstDSI	CCRYGG	2 cut(s)	15, 584
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	183, 299, 579
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	252, 298, 322
BstMBI	GATC	3 cut(s)	249, 295, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 227, 268
BstNI	CCWGG	2 cut(s)	57, 188
BstSCI	CCNGG	2 cut(s)	55, 186
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	713
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	2 cut(s)	15, 584
BtsCI	GGATG	3 cut(s)	183, 299, 579
BtsIMutI	CAGTG	3 cut(s)	16, 640, 692
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	118, 349
CviAII	CATG	2 cut(s)	41, 100
CviQI	GTAC	2 cut(s)	118, 349
DdeI	CTNAG	3 cut(s)	343, 542, 684
DpnI	GATC	3 cut(s)	251, 297, 321
DpnII	GATC	3 cut(s)	249, 295, 319
DraIII	CACNNNGTG	1 cut(s)	644
Eam1104I	CTCTTC	3 cut(s)	71, 516, 558
EarI	CTCTTC	3 cut(s)	71, 516, 558
Eco47III	AGCGCT	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoRI	GAATTC	3 cut(s)	331, 460, 652
EcoRII	CCWGG	2 cut(s)	55, 186
FaeI	CATG	2 cut(s)	44, 103
FaiI	YATR	2 cut(s)	42, 101
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	40, 99
Fnu4HI	GCNGC	2 cut(s)	82, 158
FokI	GGATG	3 cut(s)	170, 286, 586
Fsp4HI	GCNGC	2 cut(s)	82, 158
FspBI	CTAG	4 cut(s)	21, 68, 353, 560
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	82, 158
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	44, 103
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	5 cut(s)	107, 112, 255, 380, 427
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	5 cut(s)	202, 329, 496, 764, 782
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	254, 304, 543
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	45, 506, 627
HpyCH4III	ACNGT	2 cut(s)	11, 644
HpyCH4IV	ACGT	2 cut(s)	197, 393
HpyCH4V	TGCA	3 cut(s)	44, 446, 549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 227, 268
HpyF3I	CTNAG	3 cut(s)	343, 542, 684
HpySE526I	ACGT	2 cut(s)	197, 393
Hsp92II	CATG	2 cut(s)	44, 103
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	249, 295, 319
LguI	GCTCTTC	2 cut(s)	71, 558
LmnI	GCTCC	1 cut(s)	405
LpnPI	CCDG	9 cut(s)	42, 69, 101, 173, 200, 228, 450, 634, 696
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	4 cut(s)	21, 68, 353, 560
MaeII	ACGT	2 cut(s)	197, 393
MaeIII	GTNAC	2 cut(s)	29, 634
MalI	GATC	3 cut(s)	251, 297, 321
MboI	GATC	3 cut(s)	249, 295, 319
MboII	GAAGA	6 cut(s)	88, 155, 533, 542, 575, 718
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	7 cut(s)	50, 121, 231, 331, 441, 460, 652
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	2 cut(s)	224, 266
MslI	CAYNNNNRTG	2 cut(s)	188, 413
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	57, 188
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	57, 188
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	70, 227, 268
NdeII	GATC	3 cut(s)	249, 295, 319
NlaIII	CATG	2 cut(s)	44, 103
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	29
NspV	TTCGAA	2 cut(s)	110, 141
PciSI	GCTCTTC	2 cut(s)	71, 558
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	5 cut(s)	107, 112, 255, 380, 427
PkrI	GCNGC	2 cut(s)	83, 159
PshBI	ATTAAT	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	55, 186
PspGI	CCWGG	2 cut(s)	55, 186
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	260
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	119, 350
RsaNI	GTAC	2 cut(s)	118, 349
RseI	CAYNNNNRTG	2 cut(s)	188, 413
SapI	GCTCTTC	2 cut(s)	71, 558
SaqAI	TTAA	2 cut(s)	224, 266
SatI	GCNGC	2 cut(s)	82, 158
Sau3AI	GATC	3 cut(s)	249, 295, 319
Sau96I	GGNCC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	57, 188
SfuI	TTCGAA	2 cut(s)	110, 141
SmiMI	CAYNNNNRTG	2 cut(s)	188, 413
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	7 cut(s)	50, 121, 231, 331, 441, 460, 652
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	4 cut(s)	21, 68, 353, 560
StyD4I	CCNGG	2 cut(s)	55, 186
TaaI	ACNGT	2 cut(s)	11, 644
TaiI	ACGT	2 cut(s)	200, 396
TaqI	TCGA	6 cut(s)	110, 141, 153, 201, 327, 368
TasI	AATT	7 cut(s)	50, 121, 231, 331, 441, 460, 652
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	5 cut(s)	107, 112, 255, 380, 427
Tru1I	TTAA	2 cut(s)	224, 266
Tru9I	TTAA	2 cut(s)	224, 266
TscAI	CASTG	3 cut(s)	16, 647, 692
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	609
TspGWI	ACGGA	6 cut(s)	85, 105, 387, 403, 462, 522
TspRI	CASTG	3 cut(s)	16, 647, 692
VspI	ATTAAT	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	621
XapI	RAATTY	3 cut(s)	331, 460, 652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	4 cut(s)	21, 68, 353, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.