Rh4BG172800

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
30878825 .. 30879172
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG172800.1

Sequence Viewer

Length: 348 bp
ATGCCATCTGCTTTCTTGGACAGCAAGGATCCATCCGATAAATCATTCGGTGATCTATTCGAGAATTCAAAGACCTCAGCGTACCTAGAATGGTTGAACTCGAAGCCGAAAGAATTTGTCATCTACGTTTCGTTTAGGAGCATTTCCGTGCTGTCCAAGATTCAAATGGAGGAAATTGCAAAAGGGTTGTTGAATTCTGGTCGTCCGTTTTTGTGGGTGATTAGAGAAAACCAAAAGAACGGAGAAGGTAAGGAAGAGAAAGAAGAAGACAAACTGAGTTGCAGAGAGGAACTAGAAGAGCTTGGGATGATAGTCCCGTGGTGTAGTCAAGTGGAGGTTGTTTTGTAA

Protein Analysis

115

Amino Acids

13.21

Weight (kDa)

4.77

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15550
fragaria_vesca FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 23, 36
AcsI RAATTY 3 cut(s) 64, 113, 193
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 4 cut(s) 69, 97, 164, 193
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
AlwI GGATC 2 cut(s) 23, 36
ApoI RAATTY 3 cut(s) 64, 113, 193
AsuHPI GGTGA 2 cut(s) 62, 229
BamHI GGATCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 13, 40
BfaI CTAG 2 cut(s) 86, 293
BmiI GGNNCC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 2 cut(s) 32, 312
BseMII CTCAG 2 cut(s) 90, 266
BslFI GGGAC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 299
Bsp143I GATC 2 cut(s) 28, 52
BspCNI CTCAG 2 cut(s) 89, 267
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 2 cut(s) 23, 36
BspQI GCTCTTC 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 2 cut(s) 28, 52
Bst6I CTCTTC 2 cut(s) 249, 291
BstDEI CTNAG 2 cut(s) 76, 275
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 32, 312
BstKTI GATC 2 cut(s) 31, 55
BstMBI GATC 2 cut(s) 28, 52
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 32, 312
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 2 cut(s) 106, 301
CviKI_1 RGCY 2 cut(s) 106, 301
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 76, 275
DpnI GATC 2 cut(s) 30, 54
DpnII GATC 2 cut(s) 28, 52
Eam1104I CTCTTC 2 cut(s) 249, 291
EarI CTCTTC 2 cut(s) 249, 291
EcoRI GAATTC 2 cut(s) 64, 193
FaqI GGGAC 1 cut(s) 299
FokI GGATG 2 cut(s) 19, 319
FspBI CTAG 2 cut(s) 86, 293
HinfI GANTC 1 cut(s) 160
HphI GGTGA 2 cut(s) 62, 229
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 179, 282
HpyF3I CTNAG 2 cut(s) 76, 275
HpySE526I ACGT 1 cut(s) 126
Kzo9I GATC 2 cut(s) 28, 52
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 1 cut(s) 183
MaeI CTAG 2 cut(s) 86, 293
MaeII ACGT 1 cut(s) 126
MalI GATC 2 cut(s) 30, 54
MboI GATC 2 cut(s) 28, 52
MboII GAAGA 4 cut(s) 266, 275, 278, 308
MflI RGATCY 1 cut(s) 28
MluCI AATT 4 cut(s) 64, 113, 174, 193
MnlI CCTC 4 cut(s) 85, 163, 280, 328
MslI CAYNNNNRTG 1 cut(s) 146
NdeII GATC 2 cut(s) 28, 52
NlaIV GGNNCC 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 291
Sau3AI GATC 2 cut(s) 28, 52
SetI ASST 6 cut(s) 77, 87, 129, 250, 303, 339
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 4 cut(s) 64, 113, 174, 193
SspMI CTAG 2 cut(s) 86, 293
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 60, 101
TasI AATT 4 cut(s) 64, 113, 174, 193
TfiI GAWTC 1 cut(s) 160
TspGWI ACGGA 3 cut(s) 136, 195, 255
XapI RAATTY 3 cut(s) 64, 113, 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 86, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.