Rroxscaffold_161G00448050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000161
OG0000585
Physical Location & Seq
Reverse (-)
33942 .. 46502
12561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_161G00448050.1

Sequence Viewer

Length: 273 bp
ATGGAGGAAATTACAAAAGGGTTGTTGAATTACGGTCGTCCGTTTCGTGGGTGTTTGGATTTGGTGATGGAAAGTGAAGAGATGAGGAGGAACGCTAAGAGCAAGTTCACCCGTTGGGTCACCAGGTCACGGTCACTAGGGCAGGAAACTATTCACCGCCACCGGATCTTTGCTTCCACCCGTTGGCCCAACGGCTACAAGCCACGTCGCACCCCCACGCCGCTAGACGACAAAAACGTGGCACCCAAGCGCCCGCTGTCCCGTCGCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.74

Weight (kDa)

11.41

Isoelectric Point (pI)

86.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15550
fragaria_vesca FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 183
AciI CCGC 4 cut(s) 157, 221, 254, 268
AclWI GGATC 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 47, 129, 183
AgsI TTSAA 1 cut(s) 28
AjiI CACGTC 1 cut(s) 206
AjnI CCWGG 1 cut(s) 122
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 4 cut(s) 76, 100, 112, 146
BanI GGYRCC 1 cut(s) 241
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 124
BfaI CTAG 3 cut(s) 137, 224, 271
BfoI RGCGCY 1 cut(s) 253
BisI GCNGC 2 cut(s) 221, 268
BlsI GCNGC 2 cut(s) 222, 269
Bme1390I CCNGG 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 129, 183
BseBI CCWGG 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 47, 129, 183
BseRI GAGGAG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 47, 129, 183
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 4 cut(s) 157, 221, 254, 268
BspANI GGCC 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 241
BssMI GATC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 35, 132
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMCI CGRYCG 1 cut(s) 37
BstNI CCWGG 1 cut(s) 124
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 187
BtrI CACGTC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 186
CsiI ACCWGGT 1 cut(s) 122
CviJI RGCY 3 cut(s) 187, 195, 202
CviKI_1 RGCY 3 cut(s) 187, 195, 202
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 122
FaqI GGGAC 1 cut(s) 244
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 221, 268
Fsp4HI GCNGC 2 cut(s) 221, 268
FspBI CTAG 3 cut(s) 137, 224, 271
GlaI GCGC 1 cut(s) 251
GluI GCNGC 2 cut(s) 221, 268
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 163
HhaI GCGC 1 cut(s) 252
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HpaII CCGG 1 cut(s) 163
HphI GGTGA 4 cut(s) 76, 100, 112, 146
Hpy166II GTNNAC 1 cut(s) 108
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 2 cut(s) 210, 267
HpyCH4III ACNGT 2 cut(s) 35, 132
HpyCH4IV ACGT 2 cut(s) 205, 237
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 2 cut(s) 205, 237
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 4 cut(s) 109, 128, 136, 176
MabI ACCWGGT 1 cut(s) 122
MaeI CTAG 3 cut(s) 137, 224, 271
MaeII ACGT 2 cut(s) 205, 237
MaeIII GTNAC 3 cut(s) 118, 126, 132
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 1 cut(s) 89
MflI RGATCY 1 cut(s) 165
MluCI AATT 2 cut(s) 9, 28
MnlI CCTC 2 cut(s) 78, 81
MroXI GAANNNNTTC 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
NdeII GATC 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 3 cut(s) 118, 126, 132
PcsI WCGNNNNNNNCGW 2 cut(s) 43, 234
PdmI GAANNNNTTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 222, 269
Psp6I CCWGG 1 cut(s) 122
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 165
SatI GCNGC 2 cut(s) 221, 268
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 124
SetI ASST 3 cut(s) 128, 208, 240
SexAI ACCWGGT 1 cut(s) 122
Sse9I AATT 2 cut(s) 9, 28
SsiI CCGC 4 cut(s) 157, 221, 254, 268
SspMI CTAG 3 cut(s) 137, 224, 271
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 35, 132
TaiI ACGT 2 cut(s) 208, 240
TasI AATT 2 cut(s) 9, 28
TauI GCSGC 2 cut(s) 223, 270
TseFI GTSAC 3 cut(s) 118, 126, 132
Tsp45I GTSAC 3 cut(s) 118, 126, 132
TspGWI ACGGA 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 3 cut(s) 137, 224, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.