Rorug04G0103500

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
16156466 .. 16156941
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0103500.1

Sequence Viewer

Length: 354 bp
ATGGATATGGAAATTTTTAGTTGGAATTGCCAGGGGTTTGTGCATTCGGATGCTGTCTTGAGTGATGGCCAATCTGGTGGGCATGGGATGTTTTGGAACGATAATGTTCGTATTCAGATGGGCTCTACATCTGCGCATCACATGGATATGGTTGTGCTTGGCAACCCAGGTGAACCAAATTGGAGGCTAATAGGCTTTTATGACTACTCTAGAATTGCTGACATAGACAAATCGTGGCAACTGTTGCGTGACCTTTCTGACCTTGATTCTCTACCCTGGGTAGTGATTAGGGATTGCAATGAAATCCTGAATAATGGAGAGAAGATAGATGGTCCGCTTCGATCAGTGTGCTAG

Protein Analysis

117

Amino Acids

13.26

Weight (kDa)

4.53

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15550
fragaria_vesca FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 135
AciI CCGC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 12
AjnI CCWGG 3 cut(s) 30, 166, 275
AoxI GGCC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 69
BanII GRGCYC 1 cut(s) 125
BccI CCATC 3 cut(s) 59, 112, 323
BcgI CGANNNNNNTGC 1 cut(s) 330
BciT130I CCWGG 3 cut(s) 32, 168, 277
BfaI CTAG 2 cut(s) 210, 352
Bme1390I CCNGG 3 cut(s) 32, 168, 277
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmrFI CCNGG 3 cut(s) 32, 168, 277
BmsI GCATC 2 cut(s) 40, 145
BpuEI CTTGAG 1 cut(s) 79
BsaJI CCNNGG 4 cut(s) 31, 166, 275, 276
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 3 cut(s) 32, 168, 277
BseDI CCNNGG 4 cut(s) 31, 166, 275, 276
BseGI GGATG 2 cut(s) 55, 93
BseMI GCAATG 1 cut(s) 304
BshFI GGCC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 341
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 31, 166, 275, 276
BssMI GATC 1 cut(s) 341
Bst2UI CCWGG 3 cut(s) 32, 168, 277
Bst4CI ACNGT 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 244
BstF5I GGATG 2 cut(s) 55, 93
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 3 cut(s) 32, 168, 277
BstSCI CCNGG 3 cut(s) 30, 166, 275
BstXI CCANNNNNNTGG 1 cut(s) 77
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 2 cut(s) 55, 93
BtsIMutI CAGTG 1 cut(s) 351
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 332
CviAII CATG 2 cut(s) 83, 142
CviJI RGCY 4 cut(s) 69, 123, 187, 195
CviKI_1 RGCY 4 cut(s) 69, 123, 187, 195
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 332
EcoRII CCWGG 3 cut(s) 30, 166, 275
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 86, 145
FaiI YATR 6 cut(s) 8, 84, 143, 149, 201, 224
FatI CATG 2 cut(s) 82, 141
FokI GGATG 2 cut(s) 62, 100
FriOI GRGCYC 1 cut(s) 125
FspBI CTAG 2 cut(s) 210, 352
FspI TGCGCA 1 cut(s) 135
GlaI GCGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 69
HhaI GCGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 86, 145
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 1 cut(s) 266
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 49, 117, 259
Hpy188III TCNNGA 3 cut(s) 58, 210, 307
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 43, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
Hsp92II CATG 2 cut(s) 86, 145
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 341
LpnPI CCDG 8 cut(s) 17, 44, 60, 153, 180, 262, 289, 320
LweI GCATC 2 cut(s) 40, 145
MaeI CTAG 2 cut(s) 210, 352
MaeIII GTNAC 1 cut(s) 248
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 4 cut(s) 12, 25, 178, 213
MluNI TGGCCA 1 cut(s) 69
MnlI CCTC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MslI CAYNNNNRTG 2 cut(s) 48, 146
Msp20I TGGCCA 1 cut(s) 69
MspR9I CCNGG 3 cut(s) 32, 168, 277
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 3 cut(s) 32, 168, 277
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 1 cut(s) 341
NlaIII CATG 2 cut(s) 86, 145
NmuCI GTSAC 1 cut(s) 248
NsbI TGCGCA 1 cut(s) 135
PasI CCCWGGG 1 cut(s) 276
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 266
Psp6I CCWGG 3 cut(s) 30, 166, 275
PspGI CCWGG 3 cut(s) 30, 166, 275
PspPI GGNCC 1 cut(s) 332
RseI CAYNNNNRTG 2 cut(s) 48, 146
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 32, 168, 277
SduI GDGCHC 1 cut(s) 125
SetI ASST 3 cut(s) 172, 255, 264
SfaNI GCATC 2 cut(s) 40, 145
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 48, 146
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 4 cut(s) 12, 25, 178, 213
SsiI CCGC 1 cut(s) 335
SspMI CTAG 2 cut(s) 210, 352
StyD4I CCNGG 3 cut(s) 30, 166, 275
TaaI ACNGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 340
TasI AATT 4 cut(s) 12, 25, 178, 213
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 12
XbaI TCTAGA 1 cut(s) 209
XspI CTAG 2 cut(s) 210, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.