Rh4CG183900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000585
Physical Location & Seq
Reverse (-)
39645279 .. 39660677
15399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG183900.1

Sequence Viewer

Length: 597 bp
ATGAAATTATCTCAAAGTAGAATTACCAAGACTGCCACTAGCGCTGAAGAGCCGCGACCTGCCCTTCTTCCTGGTGGATTCGAATCAGTACAATTTCGCTCTACCATTGATCCAAGAACAGTTCGAGCTGCTACGAAAAGAAAGCAAGCCAACCATTCTGGTAACACGTTCGATGCACTTGAGCCGGAGGCGTTAAAAGCAATTGACAAGTTCAACTTGGTCGGAATCGGGCCATTAATGCCATCTGCTTTCTTGGACGGCAAGGATCCATCCGAAAAATCATTCGGTGATCTATTTGAGAATTCAAAGAACTCAGCGTACCTAGAATGGTTGAACTCGATGCCGAAAGAATCTGTCATCTACGTATCGTTTGGGAGCATTTCCGTGCTGTCTAAGATTCAAATGGAGGAAATTGCAAAAGGGTTGTTGAATTCTGGTCGTCCGTTTCTGTGGGTGATTAGAGAAAACCAAAAGAACGGAGAAGGTAAGGAAGAGAAAGAAGAAGACAAACTGAGTTGCAGAGAGGAACTAGAAGAGCTTGGGATGATAGTCCCGTGGTGTAGTCAAGTGGAGGACGTTCTGTCAAATCCTTCATGA

Protein Analysis

198

Amino Acids

22.01

Weight (kDa)

5.17

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15550
fragaria_vesca FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AccII CGCG 1 cut(s) 55
AciI CCGC 1 cut(s) 53
AclWI GGATC 3 cut(s) 104, 260, 273
AcsI RAATTY 2 cut(s) 301, 430
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 2 cut(s) 90, 320
AfeI AGCGCT 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 5 cut(s) 214, 306, 334, 401, 430
AhdI GACNNNNNGTC 1 cut(s) 580
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 128, 538
AluI AGCT 2 cut(s) 128, 538
AlwI GGATC 3 cut(s) 104, 260, 273
Aor51HI AGCGCT 1 cut(s) 43
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 301, 430
AseI ATTAAT 1 cut(s) 236
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 299, 466
AsuII TTCGAA 1 cut(s) 81
BamHI GGATCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 250, 277
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 72
BfaI CTAG 3 cut(s) 39, 323, 530
BfoI RGCGCY 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 2 cut(s) 53, 129
BlsI GCNGC 2 cut(s) 54, 130
Bme1390I CCNGG 1 cut(s) 72
BmeRI GACNNNNNGTC 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 163, 330
BpiI GAAGAC 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 554
Bse8I GATNNNNATC 1 cut(s) 82
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 2 cut(s) 269, 549
BseJI GATNNNNATC 1 cut(s) 82
BseMII CTCAG 2 cut(s) 327, 503
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 81
Bsp143I GATC 3 cut(s) 109, 265, 289
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 326, 504
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 593
BspLI GGNNCC 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 3 cut(s) 104, 260, 273
BspQI GCTCTTC 2 cut(s) 42, 528
BspT104I TTCGAA 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 3 cut(s) 109, 265, 289
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 3 cut(s) 42, 486, 528
BstBAI YACGTR 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 313, 393, 512
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 2 cut(s) 269, 549
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 3 cut(s) 112, 268, 292
BstMBI GATC 3 cut(s) 109, 265, 289
BstMWI GCNNNNNNNGC 3 cut(s) 41, 197, 238
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSNI TACGTA 1 cut(s) 364
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 2 cut(s) 269, 549
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 593
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 89, 319
CviAII CATG 1 cut(s) 594
CviJI RGCY 6 cut(s) 52, 128, 149, 184, 232, 538
CviKI_1 RGCY 6 cut(s) 52, 128, 149, 184, 232, 538
CviQI GTAC 2 cut(s) 89, 319
DdeI CTNAG 3 cut(s) 313, 393, 512
DpnI GATC 3 cut(s) 111, 267, 291
DpnII GATC 3 cut(s) 109, 265, 289
DriI GACNNNNNGTC 1 cut(s) 580
Eam1104I CTCTTC 3 cut(s) 42, 486, 528
Eam1105I GACNNNNNGTC 1 cut(s) 580
EarI CTCTTC 3 cut(s) 42, 486, 528
Eco105I TACGTA 1 cut(s) 364
Eco47III AGCGCT 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 66
EcoRI GAATTC 2 cut(s) 301, 430
EcoRII CCWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 597
FaiI YATR 1 cut(s) 595
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 1 cut(s) 536
FatI CATG 1 cut(s) 593
Fnu4HI GCNGC 2 cut(s) 53, 129
FokI GGATG 2 cut(s) 256, 556
Fsp4HI GCNGC 2 cut(s) 53, 129
FspBI CTAG 3 cut(s) 39, 323, 530
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 53, 129
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 44
Hin1II CATG 1 cut(s) 597
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 5 cut(s) 78, 83, 225, 350, 397
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 299, 466
Hpy188I TCNGA 2 cut(s) 224, 274
Hpy188III TCNNGA 1 cut(s) 594
HpyAV CCTTC 2 cut(s) 74, 476
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 3 cut(s) 167, 363, 576
HpyCH4V TGCA 3 cut(s) 176, 416, 519
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 197, 238
HpyF3I CTNAG 3 cut(s) 313, 393, 512
HpySE526I ACGT 3 cut(s) 167, 363, 576
Hsp92II CATG 1 cut(s) 597
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 3 cut(s) 109, 265, 289
LguI GCTCTTC 2 cut(s) 42, 528
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 6 cut(s) 57, 72, 84, 144, 198, 420
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 163, 330
MaeI CTAG 3 cut(s) 39, 323, 530
MaeII ACGT 3 cut(s) 167, 363, 576
MaeIII GTNAC 1 cut(s) 161
MalI GATC 3 cut(s) 111, 267, 291
MboI GATC 3 cut(s) 109, 265, 289
MboII GAAGA 6 cut(s) 59, 59, 503, 512, 515, 545
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 265
MluCI AATT 7 cut(s) 5, 21, 92, 201, 301, 411, 430
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 4 cut(s) 181, 400, 517, 565
MseI TTAA 2 cut(s) 194, 236
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 41, 197, 238
NdeII GATC 3 cut(s) 109, 265, 289
NlaIII CATG 1 cut(s) 597
NlaIV GGNNCC 1 cut(s) 267
NspV TTCGAA 1 cut(s) 81
PagI TCATGA 1 cut(s) 593
PciSI GCTCTTC 2 cut(s) 42, 528
PfeI GAWTC 5 cut(s) 78, 83, 225, 350, 397
PkrI GCNGC 2 cut(s) 54, 130
Ppu21I YACGTR 1 cut(s) 364
PshBI ATTAAT 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 230
PsrI GAACNNNNNNTAC 2 cut(s) 302, 334
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 2 cut(s) 90, 320
RsaNI GTAC 2 cut(s) 89, 319
RseI CAYNNNNRTG 1 cut(s) 383
SapI GCTCTTC 2 cut(s) 42, 528
SaqAI TTAA 2 cut(s) 194, 236
SatI GCNGC 2 cut(s) 53, 129
Sau3AI GATC 3 cut(s) 109, 265, 289
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 72
SetI ASST 8 cut(s) 61, 130, 170, 324, 366, 487, 540, 579
SfaNI GCATC 2 cut(s) 163, 330
SfuI TTCGAA 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SnaBI TACGTA 1 cut(s) 364
Sse9I AATT 7 cut(s) 5, 21, 92, 201, 301, 411, 430
SsiI CCGC 1 cut(s) 53
SspMI CTAG 3 cut(s) 39, 323, 530
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 3 cut(s) 170, 366, 579
TaqI TCGA 4 cut(s) 81, 124, 171, 338
TasI AATT 7 cut(s) 5, 21, 92, 201, 301, 411, 430
TatI WGTACW 1 cut(s) 88
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 5 cut(s) 78, 83, 225, 350, 397
Tru1I TTAA 2 cut(s) 194, 236
Tru9I TTAA 2 cut(s) 194, 236
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 17, 582
TspGWI ACGGA 3 cut(s) 373, 432, 492
VspI ATTAAT 1 cut(s) 236
XapI RAATTY 2 cut(s) 301, 430
XspI CTAG 3 cut(s) 39, 323, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.