RLG00000008285

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000585
Physical Location & Seq
Forward (+)
28300473 .. 28301057
585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008285

Sequence Viewer

Length: 345 bp
ATGGTGGATTCGAATCCGCACAATTTCGCTCTCCCATTGATCGAAGAACAATTCGAGCAGCTACGAAAAGAAAGCAAGCCAATCATCTTGGTGAACATGTTCGACGCACTTGAGCCGGAGGTGTTAAAAGCAATTGACAAGTTCAACTTGATCGGAATTGGGCCATTAATGCCATCTACTTTCTTGGACGGCAAGGATCCATTCGATAAATCATTCAGTGATCTATTCGAGAATTCAAAGAACTCAGTAGAAAACCAAAAGAACAGAGAAGGTAAGGAAGAGAAAGAAGAAGACAAACTGAGTTGCAGAGAGGAACTAGAAGAGCTTGGGATGATAGTCCCGTGA

Protein Analysis

115

Amino Acids

13.08

Weight (kDa)

4.51

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15550
fragaria_vesca FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 17
AclWI GGATC 2 cut(s) 191, 204
AcsI RAATTY 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 2 cut(s) 145, 237
AluBI AGCT 2 cut(s) 61, 325
AluI AGCT 2 cut(s) 61, 325
AlwI GGATC 2 cut(s) 191, 204
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 232
AseI ATTAAT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 11
BamHI GGATCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 205
BfaI CTAG 1 cut(s) 317
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 12
BseGI GGATG 1 cut(s) 336
BseJI GATNNNNATC 1 cut(s) 12
BseMII CTCAG 2 cut(s) 258, 290
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 163
Bsp119I TTCGAA 1 cut(s) 11
Bsp143I GATC 4 cut(s) 39, 150, 196, 220
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 257, 291
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 2 cut(s) 191, 204
BspQI GCTCTTC 1 cut(s) 315
BspT104I TTCGAA 1 cut(s) 11
BssMI GATC 4 cut(s) 39, 150, 196, 220
Bst6I CTCTTC 2 cut(s) 273, 315
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 244, 299
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 4 cut(s) 42, 153, 199, 223
BstMBI GATC 4 cut(s) 39, 150, 196, 220
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 113
CviAII CATG 1 cut(s) 97
CviJI RGCY 5 cut(s) 61, 79, 115, 163, 325
CviKI_1 RGCY 5 cut(s) 61, 79, 115, 163, 325
DdeI CTNAG 2 cut(s) 244, 299
DpnI GATC 4 cut(s) 41, 152, 198, 222
DpnII GATC 4 cut(s) 39, 150, 196, 220
Eam1104I CTCTTC 2 cut(s) 273, 315
EarI CTCTTC 2 cut(s) 273, 315
EcoRI GAATTC 1 cut(s) 232
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 323
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 317
GluI GCNGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 100
HinfI GANTC 2 cut(s) 8, 13
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 244, 299
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 4 cut(s) 39, 150, 196, 220
LguI GCTCTTC 1 cut(s) 315
LpnPI CCDG 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 317
MalI GATC 4 cut(s) 41, 152, 198, 222
MboI GATC 4 cut(s) 39, 150, 196, 220
MboII GAAGA 5 cut(s) 56, 290, 299, 302, 332
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 196
MluCI AATT 5 cut(s) 22, 50, 132, 156, 232
MnlI CCTC 2 cut(s) 112, 304
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 2 cut(s) 125, 167
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 4 cut(s) 39, 150, 196, 220
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 1 cut(s) 100
NspV TTCGAA 1 cut(s) 11
PciI ACATGT 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 8, 13
PkrI GCNGC 1 cut(s) 60
PscI ACATGT 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 161
PsuI RGATCY 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 125, 167
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 4 cut(s) 39, 150, 196, 220
Sau96I GGNCC 1 cut(s) 161
SetI ASST 4 cut(s) 63, 123, 274, 327
SfuI TTCGAA 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 5 cut(s) 22, 50, 132, 156, 232
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 317
TaqI TCGA 6 cut(s) 11, 42, 54, 102, 204, 228
TasI AATT 5 cut(s) 22, 50, 132, 156, 232
TfiI GAWTC 2 cut(s) 8, 13
Tru1I TTAA 2 cut(s) 125, 167
Tru9I TTAA 2 cut(s) 125, 167
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 58
TspRI CASTG 1 cut(s) 223
VspI ATTAAT 1 cut(s) 167
XapI RAATTY 1 cut(s) 232
XceI RCATGY 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.