Rh4CG184400

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
39741486 .. 39741836
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG184400.1

Sequence Viewer

Length: 351 bp
ATGCCATCTGCTTTCTTGGACGGCAAGGATCCATCCGATAAATCATTCGGTGATCTATTCGAGAATTCAAAGACCTCAGCGTACCTAGAATGGTTGAACTCGAAGCCGAAAGAATCTGTCATAATCTACGTTTCGTTTGGGAGCATTTCCGTGCTGTCCAAGATTCAAATGGAGGAAATTGCAAAACGGTTGTTGAATTCTGGTCGTCCGTTTCTGTGGGTGATTAGAGAAAACCAAAAGAACAGAGAAGGTAAGGAAGAGAAAGAAGAAGACAAACTGAGTCGCAGAGAGGAACTAGAAGAGCTTGGGATGATAGTCCCGTGGTGTAGTCAAGTGGAGGTTGTTTTGTAA

Protein Analysis

116

Amino Acids

13.38

Weight (kDa)

5.01

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15550
fragaria_vesca FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 23, 36
AcsI RAATTY 2 cut(s) 64, 196
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 4 cut(s) 69, 97, 167, 196
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
AlwI GGATC 2 cut(s) 23, 36
ApoI RAATTY 2 cut(s) 64, 196
AsuHPI GGTGA 2 cut(s) 62, 232
BamHI GGATCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 13, 40
BceAI ACGGC 1 cut(s) 37
BfaI CTAG 2 cut(s) 86, 296
BmiI GGNNCC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 2 cut(s) 32, 315
BseMII CTCAG 2 cut(s) 90, 269
BslFI GGGAC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 28, 52
BspCNI CTCAG 2 cut(s) 89, 270
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 2 cut(s) 23, 36
BspQI GCTCTTC 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 28, 52
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 252, 294
BstDEI CTNAG 2 cut(s) 76, 278
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 32, 315
BstKTI GATC 2 cut(s) 31, 55
BstMBI GATC 2 cut(s) 28, 52
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 2 cut(s) 32, 315
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 2 cut(s) 106, 304
CviKI_1 RGCY 2 cut(s) 106, 304
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 76, 278
DpnI GATC 2 cut(s) 30, 54
DpnII GATC 2 cut(s) 28, 52
Eam1104I CTCTTC 2 cut(s) 252, 294
EarI CTCTTC 2 cut(s) 252, 294
EcoRI GAATTC 2 cut(s) 64, 196
FaiI YATR 1 cut(s) 122
FaqI GGGAC 1 cut(s) 302
FokI GGATG 2 cut(s) 19, 322
FspBI CTAG 2 cut(s) 86, 296
HinfI GANTC 3 cut(s) 113, 163, 280
HphI GGTGA 2 cut(s) 62, 232
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 76, 278
HpySE526I ACGT 1 cut(s) 129
Kzo9I GATC 2 cut(s) 28, 52
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 1 cut(s) 186
MaeI CTAG 2 cut(s) 86, 296
MaeII ACGT 1 cut(s) 129
MalI GATC 2 cut(s) 30, 54
MboI GATC 2 cut(s) 28, 52
MboII GAAGA 4 cut(s) 269, 278, 281, 311
MflI RGATCY 1 cut(s) 28
MluCI AATT 3 cut(s) 64, 177, 196
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 4 cut(s) 85, 166, 283, 331
MslI CAYNNNNRTG 1 cut(s) 149
NdeII GATC 2 cut(s) 28, 52
NlaIV GGNNCC 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 113, 163
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 294
Sau3AI GATC 2 cut(s) 28, 52
SchI GAGTC 1 cut(s) 289
SetI ASST 6 cut(s) 77, 87, 132, 253, 306, 342
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 3 cut(s) 64, 177, 196
SspMI CTAG 2 cut(s) 86, 296
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 60, 101
TasI AATT 3 cut(s) 64, 177, 196
TfiI GAWTC 2 cut(s) 113, 163
TspGWI ACGGA 2 cut(s) 139, 198
XapI RAATTY 2 cut(s) 64, 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 2 cut(s) 86, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.