Rmu_sc0001238.1_g000022

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001238.1
OG0000585
Physical Location & Seq
Reverse (-)
94383 .. 94938
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001238.1_g000022.1.cds

Sequence Viewer

Length: 444 bp
atgttccttaccattgtgatggtaattgctagtggattcttgttcatctcatatggctttcgaaacttgacggaggctctagctattgtgttcacacttcccgcatcatttggtatcagagcgggtatcgcctgctccttagcagacgacgatctaagggagaaattcattatcgccaacctcaacgacggtagtatagaattaccattaacgctgaagagctacgaccttccgtccttcattgttgctacgaatccgtacaacggagctgtccaattgttcggcgaacagttcgagaagcttagacaagaaagcaggccaatcatactagcgaacacgtttgatgcactagagcctgaggcgttcaaagcattagacaagtataacttgatcggaatcggacctttaatgccatcagctttcttagactgcaaggacccgtag

Protein Analysis

147

Amino Acids

16.17

Weight (kDa)

4.53

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15550
fragaria_vesca FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 2 cut(s) 102, 122
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 1 cut(s) 367
AhdI GACNNNNNGTC 1 cut(s) 232
AluBI AGCT 5 cut(s) 83, 222, 269, 301, 419
AluI AGCT 5 cut(s) 83, 222, 269, 301, 419
AoxI GGCC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 401, 436
AsuII TTCGAA 1 cut(s) 61
AvaII GGWCC 2 cut(s) 401, 436
AxyI CCTNAGG 1 cut(s) 357
BccI CCATC 2 cut(s) 13, 421
BfaI CTAG 4 cut(s) 30, 80, 329, 350
Bme18I GGWCC 2 cut(s) 401, 436
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 401, 436
BmiI GGNNCC 1 cut(s) 438
BmsI GCATC 2 cut(s) 113, 334
Bpu10I CCTNAGC 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse21I CCTNAGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 263
BsnI GGCC 1 cut(s) 319
Bsp119I TTCGAA 1 cut(s) 61
Bsp143I GATC 2 cut(s) 151, 390
BspACI CCGC 2 cut(s) 102, 122
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 212
BspT104I TTCGAA 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 122
BssMI GATC 2 cut(s) 151, 390
Bst4CI ACNGT 2 cut(s) 191, 291
Bst6I CTCTTC 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 133, 317
BstDEI CTNAG 5 cut(s) 139, 155, 302, 357, 424
BstKTI GATC 2 cut(s) 154, 393
BstMBI GATC 2 cut(s) 151, 390
BstMWI GCNNNNNNNGC 2 cut(s) 128, 368
BstXI CCANNNNNNTGG 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 133, 317
Cfr13I GGNCC 2 cut(s) 401, 436
Csp6I GTAC 1 cut(s) 259
CviJI RGCY 9 cut(s) 57, 77, 83, 222, 269, 301, 319, 355, 419
CviKI_1 RGCY 9 cut(s) 57, 77, 83, 222, 269, 301, 319, 355, 419
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 5 cut(s) 139, 155, 302, 357, 424
DpnI GATC 2 cut(s) 153, 392
DpnII GATC 2 cut(s) 151, 390
DriI GACNNNNNGTC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 212
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 401, 436
Eco57I CTGAAG 1 cut(s) 236
Eco81I CCTNAGG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 436
FaiI YATR 5 cut(s) 52, 54, 197, 326, 384
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FauI CCCGC 2 cut(s) 109, 115
FauNDI CATATG 1 cut(s) 52
FspBI CTAG 4 cut(s) 30, 80, 329, 350
HaeIII GGCC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 3 cut(s) 36, 253, 396
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 3 cut(s) 119, 395, 401
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 2 cut(s) 152, 191
HpyAV CCTTC 2 cut(s) 239, 247
HpyCH4III ACNGT 2 cut(s) 191, 291
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 347, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 368
HpyF3I CTNAG 5 cut(s) 139, 155, 302, 357, 424
HpySE526I ACGT 1 cut(s) 338
Kzo9I GATC 2 cut(s) 151, 390
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 140, 266
LpnPI CCDG 3 cut(s) 145, 301, 369
LweI GCATC 2 cut(s) 113, 334
MaeI CTAG 4 cut(s) 30, 80, 329, 350
MaeII ACGT 1 cut(s) 338
MalI GATC 2 cut(s) 153, 392
MbiI CCGCTC 1 cut(s) 122
MboI GATC 2 cut(s) 151, 390
MboII GAAGA 1 cut(s) 229
MfeI CAATTG 1 cut(s) 275
MluCI AATT 4 cut(s) 24, 164, 200, 275
MnlI CCTC 3 cut(s) 67, 191, 352
MseI TTAA 2 cut(s) 209, 407
MslI CAYNNNNRTG 1 cut(s) 17
MunI CAATTG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 128, 368
NdeI CATATG 1 cut(s) 52
NdeII GATC 2 cut(s) 151, 390
NlaIV GGNNCC 1 cut(s) 438
NspV TTCGAA 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 212
PfeI GAWTC 3 cut(s) 36, 253, 396
PpuMI RGGWCCY 1 cut(s) 436
Psp5II RGGWCCY 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 2 cut(s) 401, 436
PspPPI RGGWCCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 209, 407
Sau3AI GATC 2 cut(s) 151, 390
Sau96I GGNCC 2 cut(s) 401, 436
SetI ASST 9 cut(s) 85, 183, 224, 231, 271, 303, 341, 406, 421
SfaNI GCATC 2 cut(s) 113, 334
SfuI TTCGAA 1 cut(s) 61
SinI GGWCC 2 cut(s) 401, 436
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 4 cut(s) 24, 164, 200, 275
SsiI CCGC 2 cut(s) 102, 122
SspMI CTAG 4 cut(s) 30, 80, 329, 350
TaaI ACNGT 2 cut(s) 191, 291
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 61, 294
TasI AATT 4 cut(s) 24, 164, 200, 275
TfiI GAWTC 3 cut(s) 36, 253, 396
Tru1I TTAA 2 cut(s) 209, 407
Tru9I TTAA 2 cut(s) 209, 407
TspDTI ATGAA 3 cut(s) 34, 157, 229
TspGWI ACGGA 4 cut(s) 86, 222, 246, 279
VpaK11BI GGWCC 2 cut(s) 401, 436
XapI RAATTY 1 cut(s) 164
XspI CTAG 4 cut(s) 30, 80, 329, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.