Rmu_co8436959.1_g000001

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8436959.1
Physical Location & Seq
Forward (+)
371 .. 1550
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8436959.1_g000001.1.cds

Sequence Viewer

Length: 1180 bp
ctgcccagcattgttgagagttctactttcactttactacgctacctaaagctcaccaatctattatattttcgtaactggcaaatactccaaactgcaccgcgcgccttcctatcagcgaccaccgccatgtcgcaacaccgcttcattatggtaacatttcccactcaaggccacctcaatccttccctccaactcgccaagcgtcttattcacatcatcggtgcacatgtaacgattgtcacgtccctctccgcccacctccgcattggcaatagcataagtactcctagtggcttgaccttcgcccccttttccgatggatacgacgaagggttaaggttcgcggacgtaactcaggactacatgtccgagctaaagcgtcgcggcaagcaagcgatcaaggatcttgtagagtctagtgcaagcgagggccacccttacacttgcataatgtgcaccttacttcttccttgggtggcggaactggcacgtgaactccacctcccaaccgcgctcctttggattcagccagccacagtgttcgatatatactactactacttcaacggctacaaagatctcatcaacgtcaatactactgctgctaatagtgacccttcctatgcagtagaaataccaggattgccgctagtgctgaagagccgcgaccttccttccttcattgtcgctacgaatccgtacagaggagctctcccattgttcgaagaacagtttgagaagctcggacaagaaagcaggccaatcatacttgtgaacacgttcgatgcactggaaccagaggcgttgaaagcaatagacaagtacaatttgatcggaatcgggcctttaatgccatcggctttcttggacggcaaggatccgtccgataaatcattcggaggcgatcttttccagaagtcgaaggactcagcttacctggaatggctgaactcaaagccagacgagtttatcgtctacgtcgcgtttgggagcgtggccgtgctgtccaagattcaaatggaggaaattgcaaaagggttgttgaatttcggacgtccgtttctgtgggtgattacagaaaaccaaaacagtggagaaggtaaggaagagaaagaagacgaggagctgagttgcagagaggaactagaagagcttgggatgatagtcccgtggtgta

Protein Analysis

393

Amino Acids

44.09

Weight (kDa)

5.1

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15550
fragaria_vesca FvH4_4g13000 FvH4_4g13010 FvH4_4g13020
malus_domestica MD04G1019300.v1.1 MD04G1019400.v1.1 MD04G1019500.v1.1 MD04G1019600.v1.1 MD04G1019700.v1.1
prunus_persica Prupe.1G169100_v2.0.a1 Prupe.1G169200_v2.0.a1 Prupe.1G169300_v2.0.a1
pyrus_communis pycom04g01550 pycom04g01560 pycom04g01580 pycom12g16570
rosa_chinensis RchiOBHm_Chr4g0412431 RchiOBHm_Chr4g0412441 RchiOBHm_Chr4g0412481 RchiOBHm_Chr4g0412491 RchiOBHm_Chr4g0412501 RchiOBHm_Chr4g0412731 RchiOBHm_Chr4g0412741
rosa_laevigata RLG00000008262 RLG00000008264 RLG00000008266 RLG00000008267 RLG00000008285 RLG00000008286 RLG00000008299 RLG00000008300
rosa_multiflora Rmu_co8207190.1_g000001 Rmu_co8436959.1_g000001 Rmu_co8466533.1_g000001 Rmu_sc0001238.1_g000017 Rmu_sc0001238.1_g000019 Rmu_sc0001238.1_g000022 Rmu_sc0001238.1_g000027 Rmu_sc0001238.1_g000036 Rmu_sc0003914.1_g000013 Rmu_sc0005615.1_g000006 Rmu_sc0008191.1_g000017
rosa_roxburghii Rroxscaffold_161G00448030 Rroxscaffold_161G00448050 Rroxscaffold_5G00356580 Rroxscaffold_5G00356640 Rroxscaffold_5G00356700 Rroxscaffold_5G00356890 Rroxscaffold_5G00356930 Rroxscaffold_5G00356960
rosa_rugosa Rorug04G0103500 Rorug04G0103600.1 Rorug04G0103800.1 Rorug04G0103900.1 Rorug04G0116000 Rorug04G0116000 Rorug04G0116000 Rorug04G0116300
rosa_samantha Rh4AG173100 Rh4AG173400 Rh4AG175100 Rh4AG175200 Rh4BG172800 Rh4BG174400 Rh4BG174700 Rh4BG174800 Rh4CG183800 Rh4CG183900 Rh4CG184400 Rh4CG186100 Rh4DG168100 Rh4DG168800 Rh4DG171000 Rh4DG171200 Rh4DG171800 Rh4DG171900
rosa_wichuraiana Rw0G007780 Rw4G014480 Rw4G014670 Rw4G014680 Rw4G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1060
AccI GTMKAC 1 cut(s) 978
AccII CGCG 7 cut(s) 103, 105, 347, 387, 515, 669, 986
AclWI GGATC 3 cut(s) 414, 875, 888
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 1 cut(s) 1048
AcuI CTGAAG 1 cut(s) 680
AcvI CACGTG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 1057
AfaI GTAC 3 cut(s) 286, 704, 827
AfiI CCNNNNNNNGG 2 cut(s) 170, 707
AflIII ACRYGT 3 cut(s) 229, 366, 780
AgsI TTSAA 4 cut(s) 568, 811, 1019, 1048
AhdI GACNNNNNGTC 1 cut(s) 367
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 2 cut(s) 640, 939
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AluBI AGCT 7 cut(s) 52, 376, 713, 745, 935, 1129, 1156
AluI AGCT 7 cut(s) 52, 376, 713, 745, 935, 1129, 1156
Alw21I GWGCWC 3 cut(s) 229, 461, 715
Alw44I GTGCAC 2 cut(s) 225, 457
AlwI GGATC 3 cut(s) 414, 875, 888
AoxI GGCC 5 cut(s) 172, 433, 761, 845, 999
ApaLI GTGCAC 2 cut(s) 225, 457
ApeKI GCWGC 1 cut(s) 605
ApoI RAATTY 1 cut(s) 1048
Asp700I GAANNNNTTC 1 cut(s) 782
AspLEI GCGC 3 cut(s) 105, 107, 517
AspS9I GGNCC 2 cut(s) 433, 845
AsuHPI GGTGA 2 cut(s) 46, 1084
AsuII TTCGAA 1 cut(s) 726
BaeGI GKGCMC 2 cut(s) 229, 461
BamHI GGATCC 1 cut(s) 880
BanII GRGCYC 1 cut(s) 715
BbrPI CACGTG 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 1125
Bbv12I GWGCWC 3 cut(s) 229, 461, 715
BbvI GCAGC 1 cut(s) 592
BccI CCATC 2 cut(s) 314, 865
BceAI ACGGC 3 cut(s) 586, 889, 986
BciT130I CCWGG 2 cut(s) 642, 941
BciVI GTATCC 1 cut(s) 317
BfaI CTAG 4 cut(s) 291, 420, 653, 1148
BfuI GTATCC 1 cut(s) 317
BglII AGATCT 1 cut(s) 580
BisI GCNGC 4 cut(s) 388, 606, 650, 667
BlsI GCNGC 4 cut(s) 389, 607, 651, 668
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 642, 941
BmeRI GACNNNNNGTC 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 433, 845
BmiI GGNNCC 2 cut(s) 798, 882
BmrFI CCNGG 2 cut(s) 642, 941
BmsI GCATC 1 cut(s) 778
BpiI GAAGAC 1 cut(s) 1125
BplI GAGNNNNNCTC 2 cut(s) 699, 731
Bpu14I TTCGAA 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 839
BsaHI GRCGYC 1 cut(s) 1057
BsaJI CCNNGG 2 cut(s) 473, 1172
BsaXI ACNNNNNCTCC 4 cut(s) 483, 489, 513, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 707
Bse1I ACTGG 3 cut(s) 83, 492, 798
Bse8I GATNNNNATC 1 cut(s) 839
BseBI CCWGG 2 cut(s) 642, 941
BseDI CCNNGG 2 cut(s) 473, 1172
BseGI GGATG 1 cut(s) 1167
BseJI GATNNNNATC 1 cut(s) 839
BseLI CCNNNNNNNGG 2 cut(s) 170, 707
BseMII CTCAG 3 cut(s) 371, 945, 1121
BseNI ACTGG 3 cut(s) 83, 492, 798
BsePI GCGCGC 1 cut(s) 103
BseRI GAGGAG 2 cut(s) 723, 1139
BseSI GKGCMC 2 cut(s) 229, 461
BseXI GCAGC 1 cut(s) 592
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 81
Bsh1236I CGCG 7 cut(s) 103, 105, 347, 387, 515, 669, 986
BshFI GGCC 5 cut(s) 174, 435, 763, 847, 1001
BsiHKAI GWGCWC 3 cut(s) 229, 461, 715
BslFI GGGAC 2 cut(s) 232, 1154
BslI CCNNNNNNNGG 2 cut(s) 170, 707
BsmFI GGGAC 2 cut(s) 232, 1154
BsnI GGCC 5 cut(s) 174, 435, 763, 847, 1001
Bsp119I TTCGAA 1 cut(s) 726
Bsp1286I GDGCHC 3 cut(s) 229, 461, 715
Bsp143I GATC 6 cut(s) 399, 406, 580, 834, 880, 907
BspANI GGCC 5 cut(s) 174, 435, 763, 847, 1001
BspCNI CTCAG 3 cut(s) 370, 944, 1122
BspFNI CGCG 7 cut(s) 103, 105, 347, 387, 515, 669, 986
BspLI GGNNCC 2 cut(s) 798, 882
BspPI GGATC 3 cut(s) 414, 875, 888
BspQI GCTCTTC 2 cut(s) 656, 1146
BspT104I TTCGAA 1 cut(s) 726
BsrI ACTGG 3 cut(s) 83, 492, 798
BssECI CCNNGG 2 cut(s) 473, 1172
BssHII GCGCGC 1 cut(s) 103
BssMI GATC 6 cut(s) 399, 406, 580, 834, 880, 907
BssNI GRCGYC 1 cut(s) 1057
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 642, 941
Bst4CI ACNGT 3 cut(s) 541, 735, 1094
Bst6I CTCTTC 3 cut(s) 656, 1104, 1146
BstACI GRCGYC 1 cut(s) 1057
BstAPI GCANNNNNTGC 1 cut(s) 456
BstBAI YACGTR 1 cut(s) 494
BstBI TTCGAA 1 cut(s) 726
BstC8I GCNNGC 6 cut(s) 105, 392, 396, 427, 534, 761
BstDEI CTNAG 3 cut(s) 357, 931, 1130
BstDSI CCRYGG 1 cut(s) 1172
BstF5I GGATG 1 cut(s) 1167
BstFNI CGCG 7 cut(s) 103, 105, 347, 387, 515, 669, 986
BstHHI GCGC 3 cut(s) 105, 107, 517
BstKTI GATC 6 cut(s) 402, 409, 583, 837, 883, 910
BstMBI GATC 6 cut(s) 399, 406, 580, 834, 880, 907
BstMWI GCNNNNNNNGC 7 cut(s) 104, 125, 456, 488, 655, 812, 853
BstNI CCWGG 2 cut(s) 642, 941
BstNSI RCATGY 2 cut(s) 233, 370
BstSCI CCNGG 2 cut(s) 640, 939
BstSLI GKGCMC 2 cut(s) 229, 461
BstUI CGCG 7 cut(s) 103, 105, 347, 387, 515, 669, 986
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 1125
BstX2I RGATCY 3 cut(s) 406, 580, 880
BstXI CCANNNNNNTGG 1 cut(s) 1094
BstYI RGATCY 3 cut(s) 406, 580, 880
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 5 cut(s) 174, 435, 763, 847, 1001
BtgI CCRYGG 1 cut(s) 1172
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 1167
BtsIMutI CAGTG 3 cut(s) 546, 791, 1099
Cac8I GCNNGC 6 cut(s) 105, 392, 396, 427, 534, 761
CfoI GCGC 3 cut(s) 105, 107, 517
Cfr13I GGNCC 2 cut(s) 433, 845
CseI GACGC 2 cut(s) 194, 371
Csp6I GTAC 3 cut(s) 285, 703, 826
CviAII CATG 3 cut(s) 130, 230, 367
CviQI GTAC 3 cut(s) 285, 703, 826
DdeI CTNAG 3 cut(s) 357, 931, 1130
DpnI GATC 6 cut(s) 401, 408, 582, 836, 882, 909
DpnII GATC 6 cut(s) 399, 406, 580, 834, 880, 907
DriI GACNNNNNGTC 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 999
Eam1104I CTCTTC 3 cut(s) 656, 1104, 1146
Eam1105I GACNNNNNGTC 1 cut(s) 367
EarI CTCTTC 3 cut(s) 656, 1104, 1146
EciI GGCGGA 2 cut(s) 244, 497
Ecl136II GAGCTC 1 cut(s) 713
Eco130I CCWWGG 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 713
Eco57I CTGAAG 1 cut(s) 680
Eco72I CACGTG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 713
EcoRII CCWGG 2 cut(s) 640, 939
EcoT14I CCWWGG 1 cut(s) 473
EcoT38I GRGCYC 1 cut(s) 715
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 3 cut(s) 133, 233, 370
FaqI GGGAC 2 cut(s) 232, 1154
FatI CATG 3 cut(s) 129, 229, 366
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 4 cut(s) 388, 606, 650, 667
FokI GGATG 1 cut(s) 1174
FriOI GRGCYC 1 cut(s) 715
Fsp4HI GCNGC 4 cut(s) 388, 606, 650, 667
FspBI CTAG 4 cut(s) 291, 420, 653, 1148
GlaI GCGC 3 cut(s) 104, 106, 516
GluI GCNGC 4 cut(s) 388, 606, 650, 667
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 5 cut(s) 174, 435, 763, 847, 1001
HgaI GACGC 2 cut(s) 194, 371
HhaI GCGC 3 cut(s) 105, 107, 517
Hin1I GRCGYC 1 cut(s) 1057
Hin1II CATG 3 cut(s) 133, 233, 370
Hin6I GCGC 3 cut(s) 103, 105, 515
HinP1I GCGC 3 cut(s) 103, 105, 515
HinfI GANTC 6 cut(s) 416, 526, 697, 840, 929, 1015
HphI GGTGA 2 cut(s) 46, 1084
Hpy166II GTNNAC 5 cut(s) 227, 459, 497, 778, 979
Hpy188I TCNGA 7 cut(s) 319, 373, 749, 839, 889, 902, 1055
Hpy188III TCNNGA 2 cut(s) 359, 916
Hpy8I GTNNAC 5 cut(s) 227, 459, 497, 778, 979
Hpy99I CGWCG 3 cut(s) 332, 387, 986
HpyCH4III ACNGT 3 cut(s) 541, 735, 1094
HpyCH4IV ACGT 7 cut(s) 245, 351, 493, 591, 782, 981, 1057
HpyCH4V TGCA 9 cut(s) 98, 227, 425, 450, 459, 629, 791, 1034, 1137
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 125, 456, 488, 655, 812, 853
HpyF3I CTNAG 3 cut(s) 357, 931, 1130
HpySE526I ACGT 7 cut(s) 245, 351, 493, 591, 782, 981, 1057
Hsp92I GRCGYC 1 cut(s) 1057
Hsp92II CATG 3 cut(s) 133, 233, 370
HspAI GCGC 3 cut(s) 103, 105, 515
Kzo9I GATC 6 cut(s) 399, 406, 580, 834, 880, 907
LguI GCTCTTC 2 cut(s) 656, 1146
LmnI GCTCC 4 cut(s) 522, 710, 993, 1126
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 1 cut(s) 778
MaeI CTAG 4 cut(s) 291, 420, 653, 1148
MaeII ACGT 7 cut(s) 245, 351, 493, 591, 782, 981, 1057
MaeIII GTNAC 6 cut(s) 74, 154, 232, 241, 352, 614
MalI GATC 6 cut(s) 401, 408, 582, 836, 882, 909
MboI GATC 6 cut(s) 399, 406, 580, 834, 880, 907
MboII GAAGA 6 cut(s) 461, 673, 740, 1121, 1130, 1163
MflI RGATCY 3 cut(s) 406, 580, 880
MhlI GDGCHC 3 cut(s) 229, 461, 715
MluCI AATT 3 cut(s) 829, 1029, 1048
MlyI GAGTC 2 cut(s) 425, 923
MmeI TCCRAC 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 782
MseI TTAA 2 cut(s) 338, 851
MslI CAYNNNNRTG 2 cut(s) 128, 773
MspR9I CCNGG 2 cut(s) 642, 941
MvaI CCWGG 2 cut(s) 642, 941
MvnI CGCG 7 cut(s) 103, 105, 347, 387, 515, 669, 986
MwoI GCNNNNNNNGC 7 cut(s) 104, 125, 456, 488, 655, 812, 853
NdeII GATC 6 cut(s) 399, 406, 580, 834, 880, 907
NlaIII CATG 3 cut(s) 133, 233, 370
NlaIV GGNNCC 2 cut(s) 798, 882
NmuCI GTSAC 2 cut(s) 241, 614
NspI RCATGY 2 cut(s) 233, 370
NspV TTCGAA 1 cut(s) 726
PauI GCGCGC 1 cut(s) 103
PciI ACATGT 2 cut(s) 229, 366
PciSI GCTCTTC 2 cut(s) 656, 1146
PcsI WCGNNNNNNNCGW 2 cut(s) 242, 972
PdmI GAANNNNTTC 1 cut(s) 782
PfeI GAWTC 4 cut(s) 526, 697, 840, 1015
PkrI GCNGC 4 cut(s) 389, 607, 651, 668
PleI GAGTC 2 cut(s) 424, 923
PmaCI CACGTG 1 cut(s) 494
PmlI CACGTG 1 cut(s) 494
PpsI GAGTC 2 cut(s) 424, 923
Ppu21I YACGTR 1 cut(s) 494
PscI ACATGT 2 cut(s) 229, 366
Psp124BI GAGCTC 1 cut(s) 715
Psp6I CCWGG 2 cut(s) 640, 939
PspCI CACGTG 1 cut(s) 494
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 2 cut(s) 640, 939
PspN4I GGNNCC 2 cut(s) 798, 882
PspPI GGNCC 2 cut(s) 433, 845
PsuI RGATCY 3 cut(s) 406, 580, 880
PteI GCGCGC 1 cut(s) 103
RsaI GTAC 3 cut(s) 286, 704, 827
RsaNI GTAC 3 cut(s) 285, 703, 826
RseI CAYNNNNRTG 2 cut(s) 128, 773
SacI GAGCTC 1 cut(s) 715
SapI GCTCTTC 2 cut(s) 656, 1146
SaqAI TTAA 2 cut(s) 338, 851
SatI GCNGC 4 cut(s) 388, 606, 650, 667
Sau3AI GATC 6 cut(s) 399, 406, 580, 834, 880, 907
Sau96I GGNCC 2 cut(s) 433, 845
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 2 cut(s) 425, 923
ScrFI CCNGG 2 cut(s) 642, 941
SduI GDGCHC 3 cut(s) 229, 461, 715
SfaNI GCATC 1 cut(s) 778
SfuI TTCGAA 1 cut(s) 726
SmiMI CAYNNNNRTG 2 cut(s) 128, 773
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 3 cut(s) 829, 1029, 1048
SspMI CTAG 4 cut(s) 291, 420, 653, 1148
SstI GAGCTC 1 cut(s) 715
StyD4I CCNGG 2 cut(s) 640, 939
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 3 cut(s) 541, 735, 1094
TaiI ACGT 7 cut(s) 248, 354, 496, 594, 785, 984, 1060
TaqI TCGA 4 cut(s) 546, 726, 786, 923
TasI AATT 3 cut(s) 829, 1029, 1048
TatI WGTACW 2 cut(s) 284, 825
TauI GCSGC 3 cut(s) 390, 652, 669
TfiI GAWTC 4 cut(s) 526, 697, 840, 1015
Tru1I TTAA 2 cut(s) 338, 851
Tru9I TTAA 2 cut(s) 338, 851
TscAI CASTG 3 cut(s) 546, 798, 1099
TseFI GTSAC 2 cut(s) 241, 614
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 2 cut(s) 241, 614
TspDTI ATGAA 2 cut(s) 136, 673
TspGWI ACGGA 3 cut(s) 690, 873, 1050
TspRI CASTG 3 cut(s) 546, 798, 1099
VneI GTGCAC 2 cut(s) 225, 457
XapI RAATTY 1 cut(s) 1048
XceI RCATGY 2 cut(s) 233, 370
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 1018
XmiI GTMKAC 1 cut(s) 978
XmnI GAANNNNTTC 1 cut(s) 782
XspI CTAG 4 cut(s) 291, 420, 653, 1148
ZraI GACGTC 1 cut(s) 1058
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.