Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Forward (+)

3037434 .. 3037944

Gene Structure 511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCTTTCCAATATTACCCTTATATATTACTACATTTTTCTTCACAGCTACTGGCAAGAGTTCTTGGAGGAGGGTTCTTGGAGGAGAGCTTGTCGAGGCTAGGTTTACAGAAGCTGAGCATCAACAAGGCGTTGAAGATCCCGTGGCAGGATCTTGAGGATGAAATCAAACAATGGATCAAAGCAGCCAACGTCTCACTTAGGATTCTATTCCCGATTGAGCGTAGATTCGTTGACCGAGTCTTCTACGGCCTCTCCTCTGCCGCTGACCTCTCGTTCATGGAGGTCTGCCGAGGATTGACGATTCAGATACTCAACTTCACCGACGCCGTCGTAATCGGAAGCCGATCGCCTGAGAGATTGTTCAAGGTGTTGGATGTGTTCGACTATGCACTACTTGATGCCCGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

137

Amino Acids

15.75

Weight (kDa)

7.85

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	57 - 129	1.3e-13	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	3 cut(s)	133, 159, 185
AcsI	RAATTY	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	136, 367
AluBI	AGCT	3 cut(s)	49, 90, 115
AluI	AGCT	3 cut(s)	49, 90, 115
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	3 cut(s)	133, 159, 185
AlwNI	CAGNNNCTG	2 cut(s)	52, 115
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	197
BceAI	ACGGC	2 cut(s)	265, 314
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	186, 264
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	2 cut(s)	187, 265
BmsI	GCATC	2 cut(s)	129, 391
BpiI	GAAGAC	1 cut(s)	235
Bpu1102I	GCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	143, 292
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	143, 292
BseGI	GGATG	2 cut(s)	166, 382
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	107, 345
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	3 cut(s)	84, 98, 247
BseXI	GCAGC	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	138, 151, 177, 347
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	108, 346
BspPI	GGATC	3 cut(s)	133, 159, 185
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	143, 292
BssMI	GATC	4 cut(s)	138, 151, 177, 347
BssNI	GRCGYC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	116, 200, 354
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	166, 382
BstKTI	GATC	4 cut(s)	141, 154, 180, 350
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	4 cut(s)	138, 151, 177, 347
BstMCI	CGRYCG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	2 cut(s)	138, 151
BstYI	RGATCY	2 cut(s)	138, 151
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	166, 382
CaiI	CAGNNNCTG	2 cut(s)	52, 115
CseI	GACGC	1 cut(s)	335
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	7 cut(s)	49, 90, 100, 115, 188, 252, 345
CviKI_1	RGCY	7 cut(s)	49, 90, 100, 115, 188, 252, 345
DdeI	CTNAG	3 cut(s)	116, 200, 354
DpnI	GATC	4 cut(s)	140, 153, 179, 349
DpnII	GATC	4 cut(s)	138, 151, 177, 347
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	1 cut(s)	283
FaiI	YATR	4 cut(s)	24, 26, 281, 390
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	186, 264
FokI	GGATG	2 cut(s)	173, 389
Fsp4HI	GCNGC	2 cut(s)	186, 264
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	2 cut(s)	186, 264
HaeIII	GGCC	1 cut(s)	252
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	4 cut(s)	205, 228, 240, 304
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	107, 235
Hpy188I	TCNGA	2 cut(s)	309, 341
Hpy188III	TCNNGA	2 cut(s)	155, 214
Hpy8I	GTNNAC	2 cut(s)	107, 235
Hpy99I	CGWCG	2 cut(s)	329, 335
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	392
HpyF3I	CTNAG	3 cut(s)	116, 200, 354
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	138, 151, 177, 347
LpnPI	CCDG	3 cut(s)	38, 134, 366
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	2 cut(s)	129, 391
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	192
MalI	GATC	4 cut(s)	140, 153, 179, 349
MboI	GATC	4 cut(s)	138, 151, 177, 347
MboII	GAAGA	3 cut(s)	33, 148, 235
MflI	RGATCY	2 cut(s)	138, 151
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	266
NdeII	GATC	4 cut(s)	138, 151, 177, 347
NlaIII	CATG	1 cut(s)	283
NmeAIII	GCCGAG	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	205, 228, 304
PflFI	GACNNNGTC	2 cut(s)	239, 329
PkrI	GCNGC	2 cut(s)	187, 265
Ple19I	CGATCG	1 cut(s)	350
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PstNI	CAGNNNCTG	2 cut(s)	52, 115
PsuI	RGATCY	2 cut(s)	138, 151
PsyI	GACNNNGTC	2 cut(s)	239, 329
PvuI	CGATCG	1 cut(s)	350
SatI	GCNGC	2 cut(s)	186, 264
Sau3AI	GATC	4 cut(s)	138, 151, 177, 347
SchI	GAGTC	1 cut(s)	249
SetI	ASST	8 cut(s)	51, 92, 106, 117, 195, 273, 288, 372
SfaNI	GCATC	2 cut(s)	129, 391
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	1 cut(s)	264
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	1 cut(s)	101
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	95, 384
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	205, 228, 304
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	177, 268
Tth111I	GACNNNGTC	2 cut(s)	239, 329
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.