Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

28197405 .. 28197683

Gene Structure 279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG236300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCAGAAGATCCCGTGGCAGGATCTCGAGGACGAAATCGAACGATGGATCAAAGTAGCCAACGTCTCACTTCAGATTCTGTTCCCGATCGAGCATAGATTCTTTGACCGAGTCTTCTATGGCCTCTCCTCCATCGCTGACCTCTCGTTCATGGAGGTCTGCCGAGGATTGACGATTCAGATACTCAACTTCACCGACGCCGTCGCAATCGGAAGCCGATCGCCGGAGCGATTGTTCAAGGTGTTGGATGTGTTCGACTATGCGCTACTTGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

92

Amino Acids

10.73

Weight (kDa)

4.64

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	15 - 86	5.9e-14	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	4, 30, 56
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	19, 223
AgsI	TTSAA	1 cut(s)	238
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	3 cut(s)	4, 30, 56
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	106
BccI	CCATC	2 cut(s)	39, 140
BceAI	ACGGC	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	14, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 223
BseDI	CCNNGG	2 cut(s)	14, 163
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	19, 223
BseRI	GAGGAG	1 cut(s)	118
Bsh1285I	CGRYCG	2 cut(s)	90, 221
BshFI	GGCC	1 cut(s)	123
BsiEI	CGRYCG	2 cut(s)	90, 221
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	19, 223
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	26
Bsp143I	GATC	5 cut(s)	9, 22, 48, 87, 218
BspANI	GGCC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	4, 30, 56
BssECI	CCNNGG	2 cut(s)	14, 163
BssMI	GATC	5 cut(s)	9, 22, 48, 87, 218
BssNI	GRCGYC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	5 cut(s)	12, 25, 51, 90, 221
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	5 cut(s)	9, 22, 48, 87, 218
BstMCI	CGRYCG	2 cut(s)	90, 221
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	2 cut(s)	9, 22
BstYI	RGATCY	2 cut(s)	9, 22
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	253
CaiI	CAGNNNCTG	1 cut(s)	79
CfoI	GCGC	1 cut(s)	265
CseI	GACGC	1 cut(s)	206
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	3 cut(s)	59, 123, 216
CviKI_1	RGCY	3 cut(s)	59, 123, 216
DpnI	GATC	5 cut(s)	11, 24, 50, 89, 220
DpnII	GATC	5 cut(s)	9, 22, 48, 87, 218
Eco57I	CTGAAG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	1 cut(s)	154
FaiI	YATR	4 cut(s)	96, 120, 152, 261
FatI	CATG	1 cut(s)	150
FokI	GGATG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	4 cut(s)	76, 99, 111, 175
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	75, 180, 212
Hpy188III	TCNNGA	2 cut(s)	26, 85
Hpy99I	CGWCG	2 cut(s)	200, 206
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	4
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	5 cut(s)	9, 22, 48, 87, 218
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	2 cut(s)	5, 237
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	63
MalI	GATC	5 cut(s)	11, 24, 50, 89, 220
MboI	GATC	5 cut(s)	9, 22, 48, 87, 218
MboII	GAAGA	2 cut(s)	19, 106
MflI	RGATCY	2 cut(s)	9, 22
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	22, 134, 139, 148, 152, 158
MspI	CCGG	1 cut(s)	224
NdeII	GATC	5 cut(s)	9, 22, 48, 87, 218
NlaIII	CATG	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	76, 99, 175
PflFI	GACNNNGTC	2 cut(s)	110, 200
Ple19I	CGATCG	2 cut(s)	90, 221
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	2 cut(s)	9, 22
PsyI	GACNNNGTC	2 cut(s)	110, 200
PvuI	CGATCG	2 cut(s)	90, 221
Sau3AI	GATC	5 cut(s)	9, 22, 48, 87, 218
SchI	GAGTC	1 cut(s)	120
SetI	ASST	4 cut(s)	66, 144, 159, 243
SfaNI	GCATC	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	4 cut(s)	27, 39, 90, 255
TaqII	GACCGA	1 cut(s)	123
TfiI	GAWTC	3 cut(s)	76, 99, 175
TspDTI	ATGAA	1 cut(s)	139
Tth111I	GACNNNGTC	2 cut(s)	110, 200
XhoI	CTCGAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.