Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

28701816 .. 28702368

Gene Structure 553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTGTGGCAGGATCTCGAGGACGAAATCAAACGGTGGATCAAGTCTGCCAACATCTCACTTCGGATTCTGTTCCCGGTCGAGCTTAAACTCGTTGACCAAGTCTTCTACAGCCTCTCCTCCGCAGTTAACCTCTCATTCATGGAGGTCTGCCGAGGATTGACGATTCAAATACTCAACTTCACCGACGCCGTGGCAATCGGAAGCCGATCGCCGGAGCGATTGTTCAAGGCTCCACCCGATAACCAGGTATGTGATGAACTATCTCCGAGCGGCATGTCGTTTGACTCAGGGGCTGATGACGACGAAGACGAGGAGGGGGTGATCGGTGTAGAAAGGAAGTTGATCGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

119

Amino Acids

13.28

Weight (kDa)

4.34

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	11 - 78	2.2e-11	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	2 cut(s)	123, 273
AclWI	GGATC	2 cut(s)	21, 47
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	170, 229
AjnI	CCWGG	1 cut(s)	246
AloI	GAACNNNNNNTCC	2 cut(s)	209, 241
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
AlwI	GGATC	2 cut(s)	21, 47
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	175, 334
AvaI	CYCGRG	1 cut(s)	17
BbsI	GAAGAC	2 cut(s)	97, 315
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	77, 248
BmeT110I	CYCGRG	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	77, 248
BpiI	GAAGAC	2 cut(s)	97, 315
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	154, 192
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	154, 192
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	109, 329
Bsh1285I	CGRYCG	2 cut(s)	81, 212
BsiEI	CGRYCG	2 cut(s)	81, 212
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	77, 215
BslI	CCNNNNNNNGG	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	13, 39, 209, 324, 345
BspACI	CCGC	2 cut(s)	123, 273
BspCNI	CTCAG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	21, 47
BsrBI	CCGCTC	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	154, 192
BssMI	GATC	5 cut(s)	13, 39, 209, 324, 345
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	289
BstDSI	CCRYGG	1 cut(s)	192
BstKTI	GATC	5 cut(s)	16, 42, 212, 327, 348
BstMBI	GATC	5 cut(s)	13, 39, 209, 324, 345
BstMCI	CGRYCG	2 cut(s)	81, 212
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	75, 246
BstSFI	CTRYAG	1 cut(s)	109
BstV2I	GAAGAC	2 cut(s)	97, 315
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	296
CseI	GACGC	1 cut(s)	197
CsiI	ACCWGGT	1 cut(s)	246
CviAII	CATG	2 cut(s)	142, 277
CviJI	RGCY	5 cut(s)	85, 114, 207, 233, 296
CviKI_1	RGCY	5 cut(s)	85, 114, 207, 233, 296
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	5 cut(s)	15, 41, 211, 326, 347
DpnII	GATC	5 cut(s)	13, 39, 209, 324, 345
Eco88I	CYCGRG	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	145, 280
FaiI	YATR	3 cut(s)	143, 253, 278
FatI	CATG	2 cut(s)	141, 276
Fnu4HI	GCNGC	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	274
GluI	GCNGC	1 cut(s)	274
HapII	CCGG	2 cut(s)	77, 215
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	145, 280
HincII	GTYRAC	2 cut(s)	97, 130
HindII	GTYRAC	2 cut(s)	97, 130
HinfI	GANTC	3 cut(s)	67, 166, 287
HpaI	GTTAAC	1 cut(s)	130
HpaII	CCGG	2 cut(s)	77, 215
HphI	GGTGA	2 cut(s)	175, 334
Hpy166II	GTNNAC	2 cut(s)	97, 130
Hpy188I	TCNGA	3 cut(s)	66, 203, 270
Hpy188III	TCNNGA	2 cut(s)	17, 349
Hpy8I	GTNNAC	2 cut(s)	97, 130
Hpy99I	CGWCG	2 cut(s)	191, 308
HpyCH4III	ACNGT	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	289
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	145, 280
KspAI	GTTAAC	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	13, 39, 209, 324, 345
LmnI	GCTCC	2 cut(s)	217, 238
LpnPI	CCDG	5 cut(s)	90, 228, 233, 260, 276
MabI	ACCWGGT	1 cut(s)	246
MalI	GATC	5 cut(s)	15, 41, 211, 326, 347
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	5 cut(s)	13, 39, 209, 324, 345
MboII	GAAGA	2 cut(s)	97, 320
MflI	RGATCY	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	8 cut(s)	13, 125, 130, 139, 143, 149, 307, 310
MseI	TTAA	2 cut(s)	87, 129
MspI	CCGG	2 cut(s)	77, 215
MspR9I	CCNGG	2 cut(s)	77, 248
MvaI	CCWGG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	5 cut(s)	13, 39, 209, 324, 345
NlaIII	CATG	2 cut(s)	145, 280
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	179
NspI	RCATGY	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	67, 166
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	275
Ple19I	CGATCG	1 cut(s)	212
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	13
PsyI	GACNNNGTC	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	87, 129
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	5 cut(s)	13, 39, 209, 324, 345
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	77, 248
SetI	ASST	4 cut(s)	87, 135, 150, 252
SexAI	ACCWGGT	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SsiI	CCGC	2 cut(s)	123, 273
StyD4I	CCNGG	2 cut(s)	75, 246
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	18, 81, 348
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	67, 166
Tru1I	TTAA	2 cut(s)	87, 129
Tru9I	TTAA	2 cut(s)	87, 129
TspDTI	ATGAA	2 cut(s)	130, 273
Tth111I	GACNNNGTC	1 cut(s)	101
XceI	RCATGY	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.