Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

234105 .. 234470

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCCATCATCACCTCCGACTCCGCCGACCTCTCGTTCATGGAGGTCTGCCGAGGAACTACGATTCAGATACTCAACTTCACCGACGCCGTCGCAATCGGAAGCCGATCGCCGGAGCGATTGTTCAAGGTGTTAGATGTGTTTGAGACTATGCGCGACTTGATGCCGGAATTTGATTCTGTGTTCTCGAATCAGTACTGCTTGTTTCTCAGGAATGAAGCAATTACGATCTGGAAAAGATTAGGTGAAGCGATTAGAGGAATTTTCATGGAATTAGAGAATCTGATCAGTCGAGACCCGGCCAAGACTCTAGTTCCGGGCGGCGAGCTCCACCCGATTACCCGGTACGTGATGAACTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

121

Amino Acids

13.85

Weight (kDa)

4.93

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	7 - 121	4.4e-33	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	24, 321
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	170, 261
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	197, 347
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	127
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	140, 288
AoxI	GGCC	1 cut(s)	300
ApoI	RAATTY	2 cut(s)	170, 261
AspLEI	GCGC	1 cut(s)	156
AsuC2I	CCSGG	3 cut(s)	299, 318, 343
AsuHPI	GGTGA	3 cut(s)	4, 73, 257
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	3 cut(s)	299, 318, 343
BcoDI	GTCTC	2 cut(s)	140, 288
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	3 cut(s)	299, 318, 343
BmrFI	CCNGG	3 cut(s)	299, 318, 343
BmsI	GCATC	1 cut(s)	153
BpuMI	CCSGG	3 cut(s)	299, 318, 343
BsaAI	YACGTR	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	5 cut(s)	113, 167, 299, 317, 343
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	140, 288
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	107, 228, 285
BspACI	CCGC	2 cut(s)	24, 321
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	107, 228, 285
BssNI	GRCGYC	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	110, 231, 288
BstMAI	GTCTC	2 cut(s)	140, 288
BstMBI	GATC	3 cut(s)	107, 228, 285
BstMCI	CGRYCG	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	297, 316, 341
BstUI	CGCG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	156
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	196, 346
CviAII	CATG	2 cut(s)	40, 268
CviJI	RGCY	3 cut(s)	105, 302, 328
CviKI_1	RGCY	3 cut(s)	105, 302, 328
CviQI	GTAC	2 cut(s)	196, 346
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	3 cut(s)	109, 230, 287
DpnII	GATC	3 cut(s)	107, 228, 285
EaeI	YGGCCR	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	2 cut(s)	43, 271
FaiI	YATR	3 cut(s)	41, 152, 269
FatI	CATG	2 cut(s)	39, 267
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	5 cut(s)	113, 167, 299, 317, 343
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	43, 271
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	6 cut(s)	20, 64, 176, 190, 280, 307
HpaII	CCGG	5 cut(s)	113, 167, 299, 317, 343
HphI	GGTGA	3 cut(s)	4, 73, 257
Hpy188I	TCNGA	5 cut(s)	19, 69, 101, 285, 365
Hpy188III	TCNNGA	4 cut(s)	187, 211, 232, 293
Hpy99I	CGWCG	2 cut(s)	89, 95
HpyCH4IV	ACGT	1 cut(s)	348
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	43, 271
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	107, 228, 285
LmnI	GCTCC	2 cut(s)	115, 333
LpnPI	CCDG	7 cut(s)	126, 180, 196, 217, 312, 330, 356
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	348
MalI	GATC	3 cut(s)	109, 230, 287
MboI	GATC	3 cut(s)	107, 228, 285
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	4 cut(s)	170, 222, 261, 272
MlyI	GAGTC	2 cut(s)	14, 301
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	25, 37, 41, 47, 251
MspI	CCGG	5 cut(s)	113, 167, 299, 317, 343
MspR9I	CCNGG	3 cut(s)	299, 318, 343
MvnI	CGCG	1 cut(s)	156
NciI	CCSGG	3 cut(s)	299, 318, 343
NdeII	GATC	3 cut(s)	107, 228, 285
NlaIII	CATG	2 cut(s)	43, 271
NmeAIII	GCCGAG	1 cut(s)	77
PfeI	GAWTC	4 cut(s)	64, 176, 190, 280
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	323
Ple19I	CGATCG	1 cut(s)	110
PleI	GAGTC	2 cut(s)	14, 301
PpsI	GAGTC	2 cut(s)	14, 301
Ppu21I	YACGTR	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	330
PsyI	GACNNNGTC	1 cut(s)	89
PvuI	CGATCG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	197, 347
RsaNI	GTAC	2 cut(s)	196, 346
SacI	GAGCTC	1 cut(s)	330
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	3 cut(s)	107, 228, 285
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	2 cut(s)	14, 301
ScrFI	CCNGG	3 cut(s)	299, 318, 343
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	7 cut(s)	17, 33, 48, 132, 247, 330, 351
SfaNI	GCATC	1 cut(s)	153
Sse9I	AATT	4 cut(s)	170, 222, 261, 272
SsiI	CCGC	2 cut(s)	24, 321
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	297, 316, 341
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	188, 292
TasI	AATT	4 cut(s)	170, 222, 261, 272
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	4 cut(s)	64, 176, 190, 280
TspDTI	ATGAA	3 cut(s)	28, 231, 256
Tth111I	GACNNNGTC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	170, 261
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.