Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Forward (+)

64179288 .. 64180985

Gene Structure 1698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGATGATGGGTGTTGGTGGCACAAAAGGGCATCCTCGATTCAATCCAAAGAATCAGCTGCTGGCAAGAGTTCTTGGAGGAGGGTTCTTGGAGGAGAGCTTGTTGAGGCTAGGTTTACAGAAGCTGAGCATCGACAAAGTGCAGAAGATCCCGTGGCAGGATCTCGAGGACGAAATCGAACGGTGGATCAAAGCAGCCAACGTCTCACTTCGGATTCTGTTCCCGATCGAGCGTAGATTCTTTGACCGAGTCTTCTATGGCCTCTCCTCTGTCGCTGACCTCTCGTTCATGGAGGTCTGCCGAGGATTGACGATTCAGATACTCAACTTCACCGACGCCGTCGCAATCAGAAGCCGATCGCCGGAGCGATTGTTCAAGGTGTTGGATGTGTTCGACTATGCGCTACTTGATGCCCGAATTCGATTCCTTGTTCTCAAATCAGTACTGGTTGCTTCTCAGGAACGAAGCAATTACGATCCAGAAAAGATTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

165

Amino Acids

19.02

Weight (kDa)

9.37

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	62 - 133	6.3e-14	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	145, 171, 197, 473
AcsI	RAATTY	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	2 cut(s)	160, 364
AgsI	TTSAA	2 cut(s)	46, 379
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
AluBI	AGCT	3 cut(s)	61, 102, 127
AluI	AGCT	3 cut(s)	61, 102, 127
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	4 cut(s)	145, 171, 197, 473
AlwNI	CAGNNNCTG	2 cut(s)	64, 127
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	61, 197
ApoI	RAATTY	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	48, 209
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	62, 198
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	2 cut(s)	63, 199
BmcAI	AGTACT	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	43, 141, 403
BpiI	GAAGAC	1 cut(s)	247
Bpu1102I	GCTNAGC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	155, 304
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 364
Bse1I	ACTGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	155, 304
BseGI	GGATG	2 cut(s)	34, 394
BseLI	CCNNNNNNNGG	2 cut(s)	160, 364
BseMII	CTCAG	2 cut(s)	119, 473
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	3 cut(s)	96, 110, 259
BseXI	GCAGC	2 cut(s)	48, 209
BsgI	GTGCAG	1 cut(s)	164
Bsh1285I	CGRYCG	2 cut(s)	231, 362
BshFI	GGCC	1 cut(s)	264
BsiEI	CGRYCG	2 cut(s)	231, 362
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	160, 364
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	6 cut(s)	150, 163, 189, 228, 359, 478
Bsp1720I	GCTNAGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	2 cut(s)	120, 472
BspPI	GGATC	4 cut(s)	145, 171, 197, 473
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	2 cut(s)	155, 304
BssMI	GATC	6 cut(s)	150, 163, 189, 228, 359, 478
BssNI	GRCGYC	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	128, 459
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	34, 394
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	6 cut(s)	153, 166, 192, 231, 362, 481
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	6 cut(s)	150, 163, 189, 228, 359, 478
BstMCI	CGRYCG	2 cut(s)	231, 362
BstV1I	GCAGC	2 cut(s)	48, 209
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	150, 163
BstYI	RGATCY	2 cut(s)	150, 163
BsuRI	GGCC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	34, 394
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	2 cut(s)	64, 127
CfoI	GCGC	1 cut(s)	406
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	7 cut(s)	61, 102, 112, 127, 200, 264, 357
CviKI_1	RGCY	7 cut(s)	61, 102, 112, 127, 200, 264, 357
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	2 cut(s)	128, 459
DpnI	GATC	6 cut(s)	152, 165, 191, 230, 361, 480
DpnII	GATC	6 cut(s)	150, 163, 189, 228, 359, 478
Eco88I	CYCGRG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	295
FaiI	YATR	3 cut(s)	261, 293, 402
FatI	CATG	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	62, 198
FokI	GGATG	2 cut(s)	21, 401
Fsp4HI	GCNGC	2 cut(s)	62, 198
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	2 cut(s)	62, 198
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	7 cut(s)	42, 55, 217, 240, 252, 316, 426
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	216, 321, 353
Hpy188III	TCNNGA	4 cut(s)	167, 226, 461, 482
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	2 cut(s)	341, 347
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	128, 459
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	6 cut(s)	150, 163, 189, 228, 359, 478
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	5 cut(s)	50, 146, 378, 434, 446
Lsp1109I	GCAGC	2 cut(s)	48, 209
LweI	GCATC	3 cut(s)	43, 141, 403
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	204
MalI	GATC	6 cut(s)	152, 165, 191, 230, 361, 480
MboI	GATC	6 cut(s)	150, 163, 189, 228, 359, 478
MboII	GAAGA	2 cut(s)	160, 247
MflI	RGATCY	2 cut(s)	150, 163
MluCI	AATT	2 cut(s)	420, 472
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	1 cut(s)	365
NdeII	GATC	6 cut(s)	150, 163, 189, 228, 359, 478
NlaIII	CATG	1 cut(s)	295
NmeAIII	GCCGAG	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	167
PfeI	GAWTC	6 cut(s)	42, 55, 217, 240, 316, 426
PflFI	GACNNNGTC	2 cut(s)	251, 341
PkrI	GCNGC	2 cut(s)	63, 199
Ple19I	CGATCG	2 cut(s)	231, 362
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PstNI	CAGNNNCTG	2 cut(s)	64, 127
PsuI	RGATCY	2 cut(s)	150, 163
PsyI	GACNNNGTC	2 cut(s)	251, 341
PvuI	CGATCG	2 cut(s)	231, 362
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SatI	GCNGC	2 cut(s)	62, 198
Sau3AI	GATC	6 cut(s)	150, 163, 189, 228, 359, 478
ScaI	AGTACT	1 cut(s)	447
SchI	GAGTC	1 cut(s)	261
SetI	ASST	9 cut(s)	63, 104, 118, 129, 207, 285, 300, 384, 497
SfaNI	GCATC	3 cut(s)	43, 141, 403
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	420, 472
SspMI	CTAG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	7 cut(s)	40, 135, 168, 180, 231, 396, 424
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	420, 472
TatI	WGTACW	1 cut(s)	445
TfiI	GAWTC	6 cut(s)	42, 55, 217, 240, 316, 426
TseI	GCWGC	2 cut(s)	61, 197
TspDTI	ATGAA	1 cut(s)	280
Tth111I	GACNNNGTC	2 cut(s)	251, 341
XapI	RAATTY	1 cut(s)	420
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	1 cut(s)	113
ZrmI	AGTACT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.