Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Forward (+)

3181764 .. 3182066

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG021300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTTCGACTGGAGGACGAGTTCAGGACCTTGGTGGAGCACCGCAGCGAGTCGCTAGAGCTCAGTCGCGCATTTCGGAGCGAGTCAAATGGTACCTTGATTTTGACTCGGGAGCTAAAGACGACGAAGACAAGGAGGAGTGATCGGCAACGGCGAGGAGCACTAGATCCCTACAGCGCAGCCGATCACAGACTCCGACATCGTCATCGACGCGCTGCCGTCTGGGACCATCAACGATCTTCACGAGATCGAGAAGCAGATGGTGGCGATCTGCATTTGAGGGTTTCGTCGTCGTCGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

100

Amino Acids

11.8

Weight (kDa)

11.1

Isoelectric Point (pI)

69.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AccII	CGCG	2 cut(s)	69, 213
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	94
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	2 cut(s)	61, 115
AluI	AGCT	2 cut(s)	61, 115
Alw21I	GWGCWC	3 cut(s)	42, 63, 163
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	108
ApeKI	GCWGC	3 cut(s)	45, 179, 215
Asp718I	GGTACC	1 cut(s)	92
AspLEI	GCGC	3 cut(s)	71, 179, 215
AspS9I	GGNCC	2 cut(s)	27, 226
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	2 cut(s)	27, 226
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	3 cut(s)	42, 63, 163
BbvI	GCAGC	3 cut(s)	57, 191, 202
BccI	CCATC	2 cut(s)	237, 254
BceAI	ACGGC	2 cut(s)	167, 203
BfaI	CTAG	2 cut(s)	56, 164
BfmI	CTRYAG	2 cut(s)	172, 299
BisI	GCNGC	3 cut(s)	46, 180, 216
BlsI	GCNGC	3 cut(s)	47, 181, 217
Bme18I	GGWCC	2 cut(s)	27, 226
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	27, 226
BmiI	GGNNCC	2 cut(s)	94, 227
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bse1I	ACTGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	2 cut(s)	151, 171
BseXI	GCAGC	3 cut(s)	57, 191, 202
Bsh1236I	CGCG	2 cut(s)	69, 213
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	3 cut(s)	42, 63, 163
BsiHKCI	CYCGRG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	42, 63, 163
Bsp143I	GATC	6 cut(s)	142, 166, 184, 236, 247, 268
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	2 cut(s)	69, 213
BspLI	GGNNCC	2 cut(s)	94, 227
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	6 cut(s)	142, 166, 184, 236, 247, 268
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	62
BstFNI	CGCG	2 cut(s)	69, 213
BstHHI	GCGC	3 cut(s)	71, 179, 215
BstKTI	GATC	6 cut(s)	145, 169, 187, 239, 250, 271
BstMBI	GATC	6 cut(s)	142, 166, 184, 236, 247, 268
BstSFI	CTRYAG	2 cut(s)	172, 299
BstUI	CGCG	2 cut(s)	69, 213
BstV1I	GCAGC	3 cut(s)	57, 191, 202
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
CfoI	GCGC	3 cut(s)	71, 179, 215
Cfr13I	GGNCC	2 cut(s)	27, 226
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	93
CviJI	RGCY	3 cut(s)	61, 115, 182
CviKI_1	RGCY	3 cut(s)	61, 115, 182
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	6 cut(s)	144, 168, 186, 238, 249, 270
DpnII	GATC	6 cut(s)	142, 166, 184, 236, 247, 268
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	27, 226
Eco53kI	GAGCTC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	46, 180, 216
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	3 cut(s)	46, 180, 216
FspBI	CTAG	2 cut(s)	56, 164
GlaI	GCGC	3 cut(s)	70, 178, 214
GluI	GCNGC	3 cut(s)	46, 180, 216
GsuI	CTGGAG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	3 cut(s)	71, 179, 215
Hin6I	GCGC	3 cut(s)	69, 177, 213
HinP1I	GCGC	3 cut(s)	69, 177, 213
HinfI	GANTC	4 cut(s)	50, 83, 106, 192
Hpy188I	TCNGA	2 cut(s)	78, 197
Hpy188III	TCNNGA	4 cut(s)	25, 110, 243, 251
Hpy99I	CGWCG	5 cut(s)	127, 213, 292, 295, 298
HpyCH4V	TGCA	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	62
HspAI	GCGC	3 cut(s)	69, 177, 213
KpnI	GGTACC	1 cut(s)	96
Kzo9I	GATC	6 cut(s)	142, 166, 184, 236, 247, 268
LmnI	GCTCC	4 cut(s)	37, 78, 112, 158
LpnPI	CCDG	2 cut(s)	10, 208
Lsp1109I	GCAGC	3 cut(s)	57, 191, 202
MaeI	CTAG	2 cut(s)	56, 164
MalI	GATC	6 cut(s)	144, 168, 186, 238, 249, 270
MboI	GATC	6 cut(s)	142, 166, 184, 236, 247, 268
MboII	GAAGA	2 cut(s)	139, 231
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	3 cut(s)	42, 63, 163
MlyI	GAGTC	4 cut(s)	59, 92, 100, 186
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	4 cut(s)	7, 129, 149, 273
MvnI	CGCG	2 cut(s)	69, 213
NdeII	GATC	6 cut(s)	142, 166, 184, 236, 247, 268
NlaIV	GGNNCC	2 cut(s)	94, 227
PcsI	WCGNNNNNNNCGW	2 cut(s)	151, 241
PflFI	GACNNNGTC	1 cut(s)	201
PkrI	GCNGC	3 cut(s)	47, 181, 217
PleI	GAGTC	4 cut(s)	58, 91, 100, 186
PpsI	GAGTC	4 cut(s)	58, 91, 100, 186
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	94, 227
PspPI	GGNCC	2 cut(s)	27, 226
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	3 cut(s)	46, 180, 216
Sau3AI	GATC	6 cut(s)	142, 166, 184, 236, 247, 268
Sau96I	GGNCC	2 cut(s)	27, 226
SchI	GAGTC	4 cut(s)	59, 92, 100, 186
SduI	GDGCHC	3 cut(s)	42, 63, 163
SetI	ASST	4 cut(s)	32, 63, 98, 117
SfcI	CTRYAG	2 cut(s)	172, 299
SinI	GGWCC	2 cut(s)	27, 226
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	56, 164
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	30
TaqI	TCGA	3 cut(s)	7, 208, 250
TseI	GCWGC	3 cut(s)	45, 179, 215
Tth111I	GACNNNGTC	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	27, 226
XspI	CTAG	2 cut(s)	56, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.