Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

587488 .. 588987

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026108

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAGAGCGATTGGATTTAAAATAGAAGGCCGGCTTAGCGGGAACTCCACGGCATGGGGGTCCGAGCGCGATGCAGGGGATTATTGTTGGGTGCGTATTATGTCGTTTTCACTTTTTCACGAGCCTCTTAACACGACGCCGGAGCAGAGCGTCTTCATTGAACCCGTGGATTGTGCGAGTTATGGGCAGTTGGCGACCTCTACTCCGACCACAACTGCTGGGAGAGGCAATTGCACGCGCCAAAGACCTGATGCAGCAGACATGTCGTTTGACTCAGGGCCTGAAGACGACGAAGATGAGGAGGGGGTGATCGGCGACGGCAAGGAGCACCAGATCCCTATGACGCAGCAGATCACGGACTACGACATCGTCACCGGACGCGCTGCTTTCCGGGACCATCAACGATCTTCACGAGATTGCGTAGCAGTGATGGCGATCTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

149

Amino Acids

16.33

Weight (kDa)

4.53

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccII	CGCG	3 cut(s)	69, 238, 381
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	161
Alw21I	GWGCWC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	28, 278
ApeKI	GCWGC	3 cut(s)	254, 346, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspLEI	GCGC	3 cut(s)	69, 240, 383
AspS9I	GGNCC	3 cut(s)	60, 278, 394
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	319, 364
AvaII	GGWCC	2 cut(s)	60, 394
BauI	CACGAG	2 cut(s)	119, 411
BbsI	GAAGAC	2 cut(s)	145, 291
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	266, 358, 370
BccI	CCATC	2 cut(s)	405, 424
BceAI	ACGGC	2 cut(s)	66, 334
BcgI	CGANNNNNNTGC	4 cut(s)	53, 87, 246, 280
BcnI	CCSGG	1 cut(s)	392
BisI	GCNGC	3 cut(s)	255, 347, 384
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	3 cut(s)	256, 348, 385
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	2 cut(s)	60, 394
BmgT120I	GGNCC	3 cut(s)	60, 278, 394
BmiI	GGNNCC	2 cut(s)	61, 395
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	61, 241
BpiI	GAAGAC	2 cut(s)	145, 291
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	48, 165
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	30
Bse8I	GATNNNNATC	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	48, 165
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	266, 358, 370
BseYI	CCCAGC	1 cut(s)	218
Bsh1236I	CGCG	3 cut(s)	69, 238, 381
BshFI	GGCC	2 cut(s)	30, 280
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	4 cut(s)	31, 140, 375, 391
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	30, 280
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	5 cut(s)	309, 333, 351, 404, 435
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	30, 280
BspCNI	CTCAG	1 cut(s)	287
BspFNI	CGCG	3 cut(s)	69, 238, 381
BspLI	GGNNCC	2 cut(s)	61, 395
BspPI	GGATC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	48, 165
BssMI	GATC	5 cut(s)	309, 333, 351, 404, 435
BssNI	GRCGYC	1 cut(s)	137
BssSI	CACGAG	2 cut(s)	119, 411
Bst2BI	CACGAG	2 cut(s)	119, 411
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	32, 236
BstDEI	CTNAG	2 cut(s)	35, 274
BstDSI	CCRYGG	2 cut(s)	48, 165
BstFNI	CGCG	3 cut(s)	69, 238, 381
BstHHI	GCGC	3 cut(s)	69, 240, 383
BstKTI	GATC	5 cut(s)	312, 336, 354, 407, 438
BstMBI	GATC	5 cut(s)	309, 333, 351, 404, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 431
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	390
BstUI	CGCG	3 cut(s)	69, 238, 381
BstV1I	GCAGC	3 cut(s)	266, 358, 370
BstV2I	GAAGAC	2 cut(s)	145, 291
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	30, 280
BtgI	CCRYGG	2 cut(s)	48, 165
BtgZI	GCGATG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	32, 236
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	3 cut(s)	69, 240, 383
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	60, 278, 394
CseI	GACGC	4 cut(s)	139, 145, 352, 387
CviAII	CATG	2 cut(s)	54, 262
CviJI	RGCY	4 cut(s)	30, 34, 124, 280
CviKI_1	RGCY	4 cut(s)	30, 34, 124, 280
DdeI	CTNAG	2 cut(s)	35, 274
DpnI	GATC	5 cut(s)	311, 335, 353, 406, 437
DpnII	GATC	5 cut(s)	309, 333, 351, 404, 435
DraI	TTTAAA	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	60, 394
Eco57I	CTGAAG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	278
FaeI	CATG	2 cut(s)	57, 265
FaiI	YATR	5 cut(s)	55, 101, 183, 263, 341
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	53, 261
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	255, 347, 384
Fsp4HI	GCNGC	3 cut(s)	255, 347, 384
GlaI	GCGC	3 cut(s)	68, 239, 382
GluI	GCNGC	3 cut(s)	255, 347, 384
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	30, 280
HapII	CCGG	4 cut(s)	31, 140, 375, 391
HgaI	GACGC	4 cut(s)	139, 145, 352, 387
HhaI	GCGC	3 cut(s)	69, 240, 383
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	57, 265
Hin6I	GCGC	3 cut(s)	67, 238, 381
HinP1I	GCGC	3 cut(s)	67, 238, 381
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	4 cut(s)	31, 140, 375, 391
HphI	GGTGA	2 cut(s)	319, 364
Hpy188I	TCNGA	2 cut(s)	64, 207
Hpy188III	TCNNGA	2 cut(s)	119, 411
Hpy99I	CGWCG	3 cut(s)	139, 293, 320
HpyAV	CCTTC	1 cut(s)	20
HpyCH4V	TGCA	3 cut(s)	74, 234, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 431
HpyF3I	CTNAG	2 cut(s)	35, 274
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	57, 265
HspAI	GCGC	3 cut(s)	67, 238, 381
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	5 cut(s)	309, 333, 351, 404, 435
LmnI	GCTCC	2 cut(s)	142, 325
Lsp1109I	GCAGC	3 cut(s)	266, 358, 370
LweI	GCATC	2 cut(s)	61, 241
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	5 cut(s)	311, 335, 353, 406, 437
MboI	GATC	5 cut(s)	309, 333, 351, 404, 435
MboII	GAAGA	4 cut(s)	145, 296, 305, 399
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	5 cut(s)	135, 208, 218, 292, 295
MroNI	GCCGGC	1 cut(s)	30
MseI	TTAA	2 cut(s)	18, 129
MspI	CCGG	4 cut(s)	31, 140, 375, 391
MspR9I	CCNGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	229
MvnI	CGCG	3 cut(s)	69, 238, 381
MwoI	GCNNNNNNNGC	2 cut(s)	36, 431
NaeI	GCCGGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	5 cut(s)	309, 333, 351, 404, 435
NgoMIV	GCCGGC	1 cut(s)	30
NlaIII	CATG	2 cut(s)	57, 265
NlaIV	GGNNCC	2 cut(s)	61, 395
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	265
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	32
PflFI	GACNNNGTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	3 cut(s)	256, 348, 385
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PscI	ACATGT	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	61, 395
PspPI	GGNCC	3 cut(s)	60, 278, 394
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	333
PsyI	GACNNNGTC	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	18, 129
SatI	GCNGC	3 cut(s)	255, 347, 384
Sau3AI	GATC	5 cut(s)	309, 333, 351, 404, 435
Sau96I	GGNCC	3 cut(s)	60, 278, 394
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	2 cut(s)	200, 250
SfaNI	GCATC	2 cut(s)	61, 241
SinI	GGWCC	2 cut(s)	60, 394
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	390
TasI	AATT	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	18, 129
Tru9I	TTAA	2 cut(s)	18, 129
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	3 cut(s)	254, 346, 383
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	432
Tth111I	GACNNNGTC	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	60, 394
XceI	RCATGY	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.