Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

6856108 .. 6858917

Gene Structure 2810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCCGTGGCAGGATCTCGAGGACGAAATCGAAGGGTGGATCAAAGCAGCCAACGTCTCACTTCGGATTCTGTTCTCGGTCGAGCGTAAACTGGTTGGCCGAGTCTTCTACGACCTCTCCTCTGCCGCTGACCTCTTGTTCATGGAGGTCTGCCGAGGATCGACGATTCGGATACTCAACTTCACTGACGCCATCGCAATTGGAAGCCGATCGCCAGAGATATTGTTCAAGGTGTTGGATGTGTTCGAGACTATGCGCGACTTGATGCTGGAATTCGATTCCTTGTTCTCGAATGAGTATTGCTTGTTTCTCGGGAATGTAGCAATTACGATCCTGAAAAGATTAGGTGAAGCAAGTAAAGGAATTTTCATGGAATTAGAGAATTTGATCAGTCGAGACCCGGAGAAGACTCCGATAAGGGGCGGCGGGCTCCACCCGATTACCAGGGATACAACTTTTTACATGGCAATAGCCATTCCAAATGGTGAAAACAATAGGTACCTCAGTACTCGCTTTAGATACATCTCGACGAATTTGGGCAGGATTTGCCTTCAGAGGAGTTGGTACACATCAAGAAAGTGCAACAGATTTGGGCAAGATCGCCTTCGTATCCAAAATGATTTCAAGGAACCCAGCACGCCTGACCTGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

218

Amino Acids

25.16

Weight (kDa)

6.2

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	13 - 155	1e-34	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	498
AccII	CGCG	1 cut(s)	258
AciI	CCGC	3 cut(s)	126, 423, 426
AclWI	GGATC	4 cut(s)	21, 47, 166, 325
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	4 cut(s)	272, 363, 382, 532
AcuI	CTGAAG	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	3 cut(s)	500, 508, 566
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	229, 625
AjnI	CCWGG	1 cut(s)	443
Alw26I	GTCTC	3 cut(s)	61, 242, 390
AlwI	GGATC	4 cut(s)	21, 47, 166, 325
Ama87I	CYCGRG	2 cut(s)	17, 311
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	4 cut(s)	272, 363, 382, 532
Asp718I	GGTACC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	258
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	359, 497
AvaI	CYCGRG	2 cut(s)	17, 311
BaeI	ACNNNNGTAYC	2 cut(s)	490, 523
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	2 cut(s)	97, 413
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	445
BciVI	GTATCC	3 cut(s)	165, 442, 620
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	3 cut(s)	61, 242, 390
BfuI	GTATCC	3 cut(s)	165, 442, 620
BisI	GCNGC	3 cut(s)	48, 126, 424
BlsI	GCNGC	3 cut(s)	49, 127, 425
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	2 cut(s)	401, 445
BmeT110I	CYCGRG	2 cut(s)	17, 311
BmiI	GGNNCC	3 cut(s)	431, 500, 630
BmrFI	CCNGG	2 cut(s)	401, 445
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	2 cut(s)	97, 413
BpuMI	CCSGG	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	5, 154, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	3 cut(s)	5, 154, 444
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	517
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	2 cut(s)	109, 571
BseXI	GCAGC	1 cut(s)	59
BseYI	CCCAGC	1 cut(s)	632
Bsh1236I	CGCG	1 cut(s)	258
Bsh1285I	CGRYCG	2 cut(s)	81, 212
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	498
BsiEI	CGRYCG	2 cut(s)	81, 212
BsiHKCI	CYCGRG	2 cut(s)	17, 311
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	3 cut(s)	61, 242, 390
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	99
Bso31I	GGTCTC	1 cut(s)	390
BsoBI	CYCGRG	2 cut(s)	17, 311
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	7 cut(s)	13, 39, 158, 209, 330, 387, 598
BspACI	CCGC	3 cut(s)	126, 423, 426
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	431, 500, 630
BspPI	GGATC	4 cut(s)	21, 47, 166, 325
BspT107I	GGYRCC	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	5, 154, 444
BssMI	GATC	7 cut(s)	13, 39, 158, 209, 330, 387, 598
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	428, 638
BstDEI	CTNAG	1 cut(s)	503
BstDSI	CCRYGG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	7 cut(s)	16, 42, 161, 212, 333, 390, 601
BstMAI	GTCTC	3 cut(s)	61, 242, 390
BstMBI	GATC	7 cut(s)	13, 39, 158, 209, 330, 387, 598
BstMCI	CGRYCG	2 cut(s)	81, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	546, 646
BstNI	CCWGG	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	399, 443
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	97, 413
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuI	GTATCC	3 cut(s)	165, 442, 620
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	428, 638
CfoI	GCGC	1 cut(s)	258
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	499, 507, 565
CviAII	CATG	4 cut(s)	142, 370, 463, 650
CviJI	RGCY	5 cut(s)	50, 99, 207, 430, 473
CviKI_1	RGCY	5 cut(s)	50, 99, 207, 430, 473
CviQI	GTAC	3 cut(s)	499, 507, 565
DdeI	CTNAG	1 cut(s)	503
DpnI	GATC	7 cut(s)	15, 41, 160, 211, 332, 389, 600
DpnII	GATC	7 cut(s)	13, 39, 158, 209, 330, 387, 598
EaeI	YGGCCR	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	2 cut(s)	17, 311
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	4 cut(s)	145, 373, 466, 653
FaiI	YATR	5 cut(s)	143, 254, 371, 464, 651
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FatI	CATG	4 cut(s)	141, 369, 462, 649
FauI	CCCGC	1 cut(s)	419
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	48, 126, 424
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	3 cut(s)	48, 126, 424
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	3 cut(s)	48, 126, 424
GsaI	CCCAGC	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	145, 373, 466, 653
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	5 cut(s)	67, 102, 166, 278, 409
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	359, 497
Hpy166II	GTNNAC	2 cut(s)	89, 567
Hpy188I	TCNGA	4 cut(s)	66, 171, 414, 555
Hpy188III	TCNNGA	8 cut(s)	17, 247, 289, 313, 334, 395, 526, 573
Hpy8I	GTNNAC	2 cut(s)	89, 567
Hpy99I	CGWCG	2 cut(s)	166, 532
HpyAV	CCTTC	3 cut(s)	26, 560, 614
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	582, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	546, 646
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	145, 373, 466, 653
HspAI	GCGC	1 cut(s)	256
KpnI	GGTACC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	7 cut(s)	13, 39, 158, 209, 330, 387, 598
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	9 cut(s)	77, 228, 254, 347, 414, 430, 457, 526, 646
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	54
MalI	GATC	7 cut(s)	15, 41, 160, 211, 332, 389, 600
MboI	GATC	7 cut(s)	13, 39, 158, 209, 330, 387, 598
MboII	GAAGA	2 cut(s)	97, 418
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	7 cut(s)	198, 272, 324, 363, 374, 382, 532
MlyI	GAGTC	2 cut(s)	111, 403
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	8 cut(s)	13, 125, 130, 139, 143, 149, 512, 549
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	401, 445
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	546, 646
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	7 cut(s)	13, 39, 158, 209, 330, 387, 598
NlaIII	CATG	4 cut(s)	145, 373, 466, 653
NlaIV	GGNNCC	3 cut(s)	431, 500, 630
NmeAIII	GCCGAG	2 cut(s)	125, 179
PaeR7I	CTCGAG	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	67, 166, 278
PkrI	GCNGC	3 cut(s)	49, 127, 425
Ple19I	CGATCG	1 cut(s)	212
PleI	GAGTC	2 cut(s)	110, 403
PpsI	GAGTC	2 cut(s)	110, 403
Psp6I	CCWGG	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	431, 500, 630
PsuI	RGATCY	1 cut(s)	13
PvuI	CGATCG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	500, 508, 566
RsaNI	GTAC	3 cut(s)	499, 507, 565
SatI	GCNGC	3 cut(s)	48, 126, 424
Sau3AI	GATC	7 cut(s)	13, 39, 158, 209, 330, 387, 598
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	2 cut(s)	111, 403
ScrFI	CCNGG	2 cut(s)	401, 445
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	9 cut(s)	57, 117, 135, 150, 234, 349, 500, 504, 648
SfaNI	GCATC	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	7 cut(s)	198, 272, 324, 363, 374, 382, 532
SsiI	CCGC	3 cut(s)	126, 423, 426
StyD4I	CCNGG	2 cut(s)	399, 443
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	9 cut(s)	18, 30, 81, 161, 246, 276, 290, 394, 527
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	7 cut(s)	198, 272, 324, 363, 374, 382, 532
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	2 cut(s)	128, 426
TfiI	GAWTC	3 cut(s)	67, 166, 278
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	130, 358
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	4 cut(s)	272, 363, 382, 532
XhoI	CTCGAG	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.