Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Forward (+)

35991254 .. 35993336

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGATGGGGCATGTCAAGCTGAACCCAACAATTCCTTGGCCGTAAGCAGTCTTCTGAGACATCCTCAACGGATTCTTTTGGACAATCACACAATGGCTACGAGGTTGGCGACCCCTACTCCGACCACAACTGCCGGGAGAGGCAGTTGTACGCGCCGAGGACCTGATGCCGCAGACTTGTCGTTTGTCTCAGGGGCTGAAGACGACGAAGACGAGGAGGGGGTGATCAGCAATGGCAAGGAGCACCAGATCCCTACGACGCAGCCGATCACGGACTACGACATCGTCATCGGACGCGCTGCTTTCCAGAACCATCAACGATCTTCACGAGATCGTGTAGCGGTGGTGGCGATCTGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

121

Amino Acids

12.9

Weight (kDa)

5.2

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	154, 297
AciI	CCGC	2 cut(s)	171, 341
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	151
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	52, 193
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	262, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspLEI	GCGC	2 cut(s)	156, 299
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	161
BarI	GAAGNNNNNNTAC	2 cut(s)	36, 68
BauI	CACGAG	1 cut(s)	327
BbsI	GAAGAC	3 cut(s)	44, 207, 216
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	274, 286
BccI	CCATC	1 cut(s)	321
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	52, 193
BisI	GCNGC	3 cut(s)	171, 263, 300
BlsI	GCNGC	3 cut(s)	172, 264, 301
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	3 cut(s)	44, 207, 216
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpuMI	CCSGG	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	36, 157
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 130, 133, 160
Bse3DI	GCAATG	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	36, 157
BseGI	GGATG	2 cut(s)	10, 61
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	47, 204
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	274, 286
Bsh1236I	CGCG	2 cut(s)	154, 297
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	52, 193
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	225, 249, 267, 320, 331, 351
BspACI	CCGC	2 cut(s)	171, 341
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	48, 203
BspFNI	CGCG	2 cut(s)	154, 297
BspPI	GGATC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	36, 157
BssMI	GATC	6 cut(s)	225, 249, 267, 320, 331, 351
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	56, 190
BstF5I	GGATG	2 cut(s)	10, 61
BstFNI	CGCG	2 cut(s)	154, 297
BstHHI	GCGC	2 cut(s)	156, 299
BstKTI	GATC	6 cut(s)	228, 252, 270, 323, 334, 354
BstMAI	GTCTC	2 cut(s)	52, 193
BstMBI	GATC	6 cut(s)	225, 249, 267, 320, 331, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 347
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	134
BstUI	CGCG	2 cut(s)	154, 297
BstV1I	GCAGC	2 cut(s)	274, 286
BstV2I	GAAGAC	3 cut(s)	44, 207, 216
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	10, 61
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	2 cut(s)	156, 299
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	2 cut(s)	268, 303
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	5 cut(s)	20, 41, 98, 197, 265
CviKI_1	RGCY	5 cut(s)	20, 41, 98, 197, 265
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	2 cut(s)	56, 190
DpnI	GATC	6 cut(s)	227, 251, 269, 322, 333, 353
DpnII	GATC	6 cut(s)	225, 249, 267, 320, 331, 351
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	15
FaiI	YATR	1 cut(s)	13
FatI	CATG	1 cut(s)	11
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	171, 263, 300
FokI	GGATG	2 cut(s)	17, 48
Fsp4HI	GCNGC	3 cut(s)	171, 263, 300
GlaI	GCGC	2 cut(s)	155, 298
GluI	GCNGC	3 cut(s)	171, 263, 300
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	2 cut(s)	268, 303
HhaI	GCGC	2 cut(s)	156, 299
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	2 cut(s)	154, 297
HinP1I	GCGC	2 cut(s)	154, 297
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	57, 123, 293
Hpy188III	TCNNGA	2 cut(s)	307, 327
Hpy99I	CGWCG	2 cut(s)	209, 262
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 347
HpyF3I	CTNAG	2 cut(s)	56, 190
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	2 cut(s)	154, 297
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	225, 249, 267, 320, 331, 351
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	5 cut(s)	148, 177, 177, 260, 320
Lsp1109I	GCAGC	2 cut(s)	274, 286
LweI	GCATC	1 cut(s)	157
MalI	GATC	6 cut(s)	227, 251, 269, 322, 333, 353
MboI	GATC	6 cut(s)	225, 249, 267, 320, 331, 351
MboII	GAAGA	4 cut(s)	44, 212, 221, 315
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	75, 96, 134, 152, 208, 211
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	136
MvnI	CGCG	2 cut(s)	154, 297
MwoI	GCNNNNNNNGC	2 cut(s)	17, 347
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	6 cut(s)	225, 249, 267, 320, 331, 351
NlaIII	CATG	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	182
NspI	RCATGY	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	4 cut(s)	107, 210, 263, 325
PfeI	GAWTC	1 cut(s)	73
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	172, 264, 301
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	249
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SatI	GCNGC	3 cut(s)	171, 263, 300
Sau3AI	GATC	6 cut(s)	225, 249, 267, 320, 331, 351
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	3 cut(s)	22, 107, 166
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	171, 341
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	36
TasI	AATT	1 cut(s)	31
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	262, 299
TspGWI	ACGGA	2 cut(s)	85, 287
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.