Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

469966 .. 470346

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG007900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCCGTGGCAGGATCTCGAGGACGAAATCGAACGGTGGATCAAAGCAGCCAACGTCTCACTTCGGATTCTGTTCCCGATCGAGCGTAGACTCGTTGACCGAGTCTTCTACGGCCTCTCCTCCGCCGCTGACCTCTCGTTCATGGAGGTCTGCCGAGGATCGACGATTCAGATACTCAACTTCACCGACGCAGTCACAATCGGAAGCCGATCGCCGGAGCGATTGTTCAAGGTGTTGGATGTGTTCGAGACTATGCGCTACTTGATGCCTGAATTCGATTCCTTGTTCTCGAATCAGTACTGCTTGTTTCTCAAGAACGAAGCAATTACGATCCGGAAAAGATTAGGTGAAGCAAGCAGAGAGGAAGTTGATCGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

126

Amino Acids

14.8

Weight (kDa)

5.0

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	12 - 121	4e-26	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	2 cut(s)	123, 126
AclWI	GGATC	4 cut(s)	21, 47, 166, 325
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	229
AloI	GAACNNNNNNTCC	2 cut(s)	209, 241
Alw26I	GTCTC	2 cut(s)	61, 242
AlwI	GGATC	4 cut(s)	21, 47, 166, 325
Ama87I	CYCGRG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	175, 359
AvaI	CYCGRG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	61, 242
BisI	GCNGC	2 cut(s)	48, 126
BlsI	GCNGC	2 cut(s)	49, 127
BmcAI	AGTACT	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	5, 154
BsaWI	WCCGGW	1 cut(s)	333
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	5, 154
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	59
Bsh1285I	CGRYCG	2 cut(s)	81, 212
BshFI	GGCC	1 cut(s)	114
BsiEI	CGRYCG	2 cut(s)	81, 212
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	215, 334
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	61, 242
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	7 cut(s)	13, 39, 78, 158, 209, 330, 370
BspACI	CCGC	2 cut(s)	123, 126
BspANI	GGCC	1 cut(s)	114
BspEI	TCCGGA	1 cut(s)	333
BspPI	GGATC	4 cut(s)	21, 47, 166, 325
BssECI	CCNNGG	2 cut(s)	5, 154
BssMI	GATC	7 cut(s)	13, 39, 78, 158, 209, 330, 370
Bst4CI	ACNGT	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	355
BstDSI	CCRYGG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	7 cut(s)	16, 42, 81, 161, 212, 333, 373
BstMAI	GTCTC	2 cut(s)	61, 242
BstMBI	GATC	7 cut(s)	13, 39, 78, 158, 209, 330, 370
BstMCI	CGRYCG	2 cut(s)	81, 212
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	355
CfoI	GCGC	1 cut(s)	258
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	3 cut(s)	50, 114, 207
CviKI_1	RGCY	3 cut(s)	50, 114, 207
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	7 cut(s)	15, 41, 80, 160, 211, 332, 372
DpnII	GATC	7 cut(s)	13, 39, 78, 158, 209, 330, 370
EciI	GGCGGA	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	145
FaiI	YATR	2 cut(s)	143, 254
FatI	CATG	1 cut(s)	141
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	48, 126
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	48, 126
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	48, 126
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	215, 334
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	6 cut(s)	67, 90, 102, 166, 278, 292
HpaII	CCGG	2 cut(s)	215, 334
HphI	GGTGA	2 cut(s)	175, 359
Hpy166II	GTNNAC	2 cut(s)	89, 97
Hpy188I	TCNGA	3 cut(s)	66, 171, 203
Hpy188III	TCNNGA	7 cut(s)	17, 76, 247, 289, 313, 334, 374
Hpy8I	GTNNAC	2 cut(s)	89, 97
Hpy99I	CGWCG	2 cut(s)	166, 191
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	1 cut(s)	256
Kpn2I	TCCGGA	1 cut(s)	333
Kzo9I	GATC	7 cut(s)	13, 39, 78, 158, 209, 330, 370
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	228, 282, 347
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	7 cut(s)	15, 41, 80, 160, 211, 332, 372
MboI	GATC	7 cut(s)	13, 39, 78, 158, 209, 330, 370
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	2 cut(s)	272, 324
MlyI	GAGTC	2 cut(s)	84, 111
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	13, 125, 130, 139, 143, 149, 355
MroI	TCCGGA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	2 cut(s)	215, 334
NdeII	GATC	7 cut(s)	13, 39, 78, 158, 209, 330, 370
NlaIII	CATG	1 cut(s)	145
NmeAIII	GCCGAG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	193
PaeR7I	CTCGAG	1 cut(s)	17
PfeI	GAWTC	4 cut(s)	67, 166, 278, 292
PflFI	GACNNNGTC	2 cut(s)	101, 191
PkrI	GCNGC	2 cut(s)	49, 127
Ple19I	CGATCG	2 cut(s)	81, 212
PleI	GAGTC	2 cut(s)	84, 110
PpsI	GAGTC	2 cut(s)	84, 110
PsuI	RGATCY	1 cut(s)	13
PsyI	GACNNNGTC	2 cut(s)	101, 191
PvuI	CGATCG	2 cut(s)	81, 212
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SatI	GCNGC	2 cut(s)	48, 126
Sau3AI	GATC	7 cut(s)	13, 39, 78, 158, 209, 330, 370
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	2 cut(s)	84, 111
SetI	ASST	5 cut(s)	57, 135, 150, 234, 349
SfaNI	GCATC	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	17, 311
SmoI	CTYRAG	2 cut(s)	17, 311
Sse9I	AATT	2 cut(s)	272, 324
SsiI	CCGC	2 cut(s)	123, 126
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	8 cut(s)	18, 30, 81, 161, 246, 276, 290, 373
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	272, 324
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	4 cut(s)	67, 166, 278, 292
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	130
Tth111I	GACNNNGTC	2 cut(s)	101, 191
XapI	RAATTY	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	88
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.