Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Forward (+)

36190526 .. 36191119

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCGACGATATTTTGCAAATTTTTTCCAACATCGACGGGCGATTTTCTCGGGGAGAAAATGGACGACGACAATCGGAGAAACTCGCGACTCTTGAGCCGACGCTCAAGTCGCCGGAGCAGCAAATCTTGCGGTATGTCATCACCGACCAGCCAATTTGGTCCAACTCTGCCGATTCCGCGGCCTTTCTCGACGCCATCGACGACTTGATAGCGACTATCAAGGACCGGACTCCGATTGCGGGGGATAAGTTTGTAGACGTAAGGGGTGAAGACGACGAAGACAAGGAGGGAGTGATTGGCGACAGTGAGGAGCATCGTATCCCTACGGAGCAGCCGATCAACGACTATGACATTGTCAACGATGCGTTGCCATCCGGGACCATCAACGATCTTCACGAGATCGCGAAGCGGATGGTGGCGATCCGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

144

Amino Acids

16.11

Weight (kDa)

4.38

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	3 cut(s)	89, 182, 407
AciI	CCGC	6 cut(s)	133, 180, 182, 242, 412, 427
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	242
AlwI	GGATC	1 cut(s)	418
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	2 cut(s)	3, 183
ApeKI	GCWGC	2 cut(s)	121, 334
ApoI	RAATTY	1 cut(s)	21
AspS9I	GGNCC	3 cut(s)	162, 226, 381
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	136, 281
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	3 cut(s)	162, 226, 381
BauI	CACGAG	1 cut(s)	398
BbsI	GAAGAC	2 cut(s)	279, 288
BbvI	GCAGC	2 cut(s)	133, 346
BccI	CCATC	4 cut(s)	206, 382, 392, 409
BciVI	GTATCC	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	3 cut(s)	122, 183, 335
BlsI	GCNGC	3 cut(s)	123, 184, 336
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	3 cut(s)	162, 226, 381
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	162, 226, 381
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	325, 355
BpiI	GAAGAC	2 cut(s)	279, 288
BpuEI	CTTGAG	2 cut(s)	92, 116
BpuMI	CCSGG	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	374, 420
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	133, 346
Bsh1236I	CGCG	3 cut(s)	89, 182, 407
BshFI	GGCC	2 cut(s)	5, 185
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	3 cut(s)	116, 229, 378
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	5, 185
BsoBI	CYCGRG	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	339, 391, 402, 423
Bsp68I	TCGCGA	2 cut(s)	89, 407
BspACI	CCGC	6 cut(s)	133, 180, 182, 242, 412, 427
BspANI	GGCC	2 cut(s)	5, 185
BspFNI	CGCG	3 cut(s)	89, 182, 407
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	4 cut(s)	339, 391, 402, 423
BssNI	GRCGYC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	374, 420
BstFNI	CGCG	3 cut(s)	89, 182, 407
BstKTI	GATC	4 cut(s)	342, 394, 405, 426
BstMBI	GATC	4 cut(s)	339, 391, 402, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 121, 130, 179
BstSCI	CCNGG	1 cut(s)	377
BstUI	CGCG	3 cut(s)	89, 182, 407
BstV1I	GCAGC	2 cut(s)	133, 346
BstV2I	GAAGAC	2 cut(s)	279, 288
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	5, 185
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	374, 420
BtsIMutI	CAGTG	1 cut(s)	313
BtuMI	TCGCGA	2 cut(s)	89, 407
Cfr13I	GGNCC	3 cut(s)	162, 226, 381
Cfr42I	CCGCGG	1 cut(s)	183
CseI	GACGC	2 cut(s)	112, 203
CviJI	RGCY	5 cut(s)	5, 100, 154, 185, 337
CviKI_1	RGCY	5 cut(s)	5, 100, 154, 185, 337
DpnI	GATC	4 cut(s)	341, 393, 404, 425
DpnII	GATC	4 cut(s)	339, 391, 402, 423
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	3 cut(s)	162, 226, 381
Eco88I	CYCGRG	1 cut(s)	51
FaiI	YATR	2 cut(s)	138, 351
FaqI	GGGAC	1 cut(s)	394
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	122, 183, 335
FokI	GGATG	2 cut(s)	361, 427
Fsp4HI	GCNGC	3 cut(s)	122, 183, 335
GluI	GCNGC	3 cut(s)	122, 183, 335
HaeIII	GGCC	2 cut(s)	5, 185
HapII	CCGG	3 cut(s)	116, 229, 378
HgaI	GACGC	2 cut(s)	112, 203
Hin1I	GRCGYC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	91, 176, 232
HpaII	CCGG	3 cut(s)	116, 229, 378
HphI	GGTGA	2 cut(s)	136, 281
Hpy166II	GTNNAC	2 cut(s)	259, 361
Hpy188I	TCNGA	2 cut(s)	79, 237
Hpy188III	TCNNGA	5 cut(s)	88, 95, 191, 398, 406
Hpy8I	GTNNAC	2 cut(s)	259, 361
Hpy99I	CGWCG	7 cut(s)	11, 41, 72, 106, 197, 206, 281
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 121, 130, 179
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	195
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	339, 391, 402, 423
LmnI	GCTCC	3 cut(s)	118, 313, 331
LpnPI	CCDG	4 cut(s)	129, 164, 242, 391
Lsp1109I	GCAGC	2 cut(s)	133, 346
LweI	GCATC	2 cut(s)	325, 355
MaeII	ACGT	1 cut(s)	261
MalI	GATC	4 cut(s)	341, 393, 404, 425
MboI	GATC	4 cut(s)	339, 391, 402, 423
MboII	GAAGA	3 cut(s)	284, 293, 386
MluCI	AATT	2 cut(s)	21, 156
MlyI	GAGTC	2 cut(s)	85, 226
MmeI	TCCRAC	2 cut(s)	54, 189
MnlI	CCTC	2 cut(s)	283, 304
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	3 cut(s)	116, 229, 378
MspR9I	CCNGG	1 cut(s)	379
MvnI	CGCG	3 cut(s)	89, 182, 407
MwoI	GCNNNNNNNGC	4 cut(s)	112, 121, 130, 179
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	339, 391, 402, 423
NlaIV	GGNNCC	1 cut(s)	382
NruI	TCGCGA	2 cut(s)	89, 407
PcsI	WCGNNNNNNNCGW	4 cut(s)	198, 201, 335, 396
PfeI	GAWTC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	123, 184, 336
PleI	GAGTC	2 cut(s)	85, 226
PpsI	GAGTC	2 cut(s)	85, 226
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	3 cut(s)	162, 226, 381
PsyI	GACNNNGTC	1 cut(s)	356
RruI	TCGCGA	2 cut(s)	89, 407
SacII	CCGCGG	1 cut(s)	183
SatI	GCNGC	3 cut(s)	122, 183, 335
Sau3AI	GATC	4 cut(s)	339, 391, 402, 423
Sau96I	GGNCC	3 cut(s)	162, 226, 381
SchI	GAGTC	2 cut(s)	85, 226
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	1 cut(s)	264
SfaNI	GCATC	2 cut(s)	325, 355
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	3 cut(s)	162, 226, 381
SmlI	CTYRAG	2 cut(s)	95, 107
SmoI	CTYRAG	2 cut(s)	95, 107
Sse9I	AATT	2 cut(s)	21, 156
SsiI	CCGC	6 cut(s)	133, 180, 182, 242, 412, 427
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	36, 192, 201
TasI	AATT	2 cut(s)	21, 156
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	176
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	2 cut(s)	121, 334
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	313
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	3 cut(s)	162, 226, 381
XapI	RAATTY	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.