Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Forward (+)

83310257 .. 83332591

Gene Structure 22335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG588000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACGGCACCGTCTTCCCTTCCAAAAGATCTGGACCACCGGTGGGACACCAAACAAACCTGCATATTCCACCGCCATAGCAACCCATCCCGGAGCACACTTCCTTGCCCATCTGCAAAACCAATCCCAGATGTCTCTCTTGTGCAGCTTAAGCATGGATTAGTTGGCTTTACAATGGGAAGTTTGTGGAGGTCGGGAGCAAATTGGACTATTTCAGTTTTCTTGTGCGCAATTGTTCGAGCATTGGGTTCTGTAGGGTATGTTTTGATCACCTCTTTCTTGATCAGAGAAAACATATTTGCTCTGATCACCATAAACATTCATGCTTCTCTAACATTCATCTTCACAGCAGCAGGCATCTATACAGTTCCATCGATGGAAGCAATATATGCCTTATTTAGTATTCTGTCTCTCTCTCTCTCACGTGTACAGCAGCTGCTGGCAAGAGTTCTTGGAGCAGGGTTCTTGGAGGAGAGCTTGTTGAGGCTAGGTTTACAAAAGCTGAGCATCGACGAAGTGCAGAAGATCCCGTGGCAGGATCTCGAGGACGAAATCGAACGGTGGATCAAAGCAGCCAACATCTCACTTAGGATTCTGTTCCCGATCGAGCGTAGATTCTTTGACCGAGTCTTCTATGGCCTCTCCTCCGTAGCTGACCTCTCGTTCATGGAGGTCTGCCGGGGATTGACGATTCAGATACTCAACTTCACCGACGCCGTCGCAATCGGAAGCCGATCGCCGGAGCGATTGTTCAAGGTGTTGGATGTGTTCGACTATGCGCTACTTGATGCCCGAATTCGATTCCTTGTTCTCGAATCAGTACTGCTTGTTTCTCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

280

Amino Acids

31.48

Weight (kDa)

7.71

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	187 - 258	1.2e-13	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc16I	TGCGCA	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	7
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	3 cut(s)	520, 546, 572
AcsI	RAATTY	1 cut(s)	795
AcvI	CACGTG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	2 cut(s)	429, 822
AfiI	CCNNNNNNNGG	3 cut(s)	43, 535, 739
AflII	CTTAAG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	424
AgeI	ACCGGT	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	754
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	5 cut(s)	148, 436, 477, 502, 653
AluI	AGCT	5 cut(s)	148, 436, 477, 502, 653
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	2 cut(s)	139, 414
AlwI	GGATC	3 cut(s)	520, 546, 572
AlwNI	CAGNNNCTG	2 cut(s)	436, 439
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	5 cut(s)	145, 350, 433, 436, 572
ApoI	RAATTY	1 cut(s)	795
AsiGI	ACCGGT	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	230, 781
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	91, 680
AsuHPI	GGTGA	3 cut(s)	262, 301, 700
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	7
BbrPI	CACGTG	1 cut(s)	425
BbsI	GAAGAC	2 cut(s)	6, 622
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	5 cut(s)	157, 362, 423, 445, 584
BccI	CCATC	4 cut(s)	94, 118, 370, 379
BceAI	ACGGC	2 cut(s)	21, 701
BclI	TGATCA	3 cut(s)	267, 282, 306
BcnI	CCSGG	2 cut(s)	91, 680
BcoDI	GTCTC	2 cut(s)	139, 414
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	5 cut(s)	146, 351, 434, 437, 573
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	5 cut(s)	147, 352, 435, 438, 574
BmcAI	AGTACT	1 cut(s)	822
Bme1390I	CCNGG	2 cut(s)	91, 680
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	91, 680
BmsI	GCATC	3 cut(s)	366, 516, 778
BpiI	GAAGAC	2 cut(s)	6, 622
Bpu1102I	GCTNAGC	1 cut(s)	503
BpuMI	CCSGG	2 cut(s)	91, 680
Bsa29I	ATCGAT	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	2 cut(s)	530, 679
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	4 cut(s)	464, 494, 734, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 535, 739
Bse118I	RCCGGY	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	530, 679
BseGI	GGATG	2 cut(s)	86, 769
BseLI	CCNNNNNNNGG	3 cut(s)	43, 535, 739
BseMII	CTCAG	1 cut(s)	494
BseRI	GAGGAG	2 cut(s)	485, 634
BseXI	GCAGC	5 cut(s)	157, 362, 423, 445, 584
BsgI	GTGCAG	2 cut(s)	164, 539
Bsh1285I	CGRYCG	2 cut(s)	606, 737
BshFI	GGCC	1 cut(s)	639
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	374
BsiEI	CGRYCG	2 cut(s)	606, 737
BsiHKAI	GWGCWC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	4 cut(s)	40, 91, 679, 740
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	43, 535, 739
BsmAI	GTCTC	2 cut(s)	139, 414
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	639
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	9 cut(s)	28, 267, 282, 306, 525, 538, 564, 603, 734
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	495
BspDI	ATCGAT	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	520, 546, 572
BspT107I	GGYRCC	1 cut(s)	7
BspTI	CTTAAG	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	530, 679
BssMI	GATC	9 cut(s)	28, 267, 282, 306, 525, 538, 564, 603, 734
BssNI	GRCGYC	1 cut(s)	714
Bst4CI	ACNGT	3 cut(s)	12, 367, 561
BstACI	GRCGYC	1 cut(s)	714
BstAFI	CTTAAG	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	427
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	355, 441
BstDEI	CTNAG	3 cut(s)	503, 587, 834
BstDSI	CCRYGG	1 cut(s)	530
BstF5I	GGATG	2 cut(s)	86, 769
BstHHI	GCGC	2 cut(s)	230, 781
BstKTI	GATC	9 cut(s)	31, 270, 285, 309, 528, 541, 567, 606, 737
BstMAI	GTCTC	2 cut(s)	139, 414
BstMBI	GATC	9 cut(s)	28, 267, 282, 306, 525, 538, 564, 603, 734
BstMCI	CGRYCG	2 cut(s)	606, 737
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 389
BstSCI	CCNGG	2 cut(s)	89, 678
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	5 cut(s)	157, 362, 423, 445, 584
BstV2I	GAAGAC	2 cut(s)	6, 622
BstX2I	RGATCY	3 cut(s)	28, 525, 538
BstYI	RGATCY	3 cut(s)	28, 525, 538
Bsu15I	ATCGAT	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	639
BsuTUI	ATCGAT	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	86, 769
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	355, 441
CaiI	CAGNNNCTG	2 cut(s)	436, 439
CfoI	GCGC	2 cut(s)	230, 781
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	374
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	2 cut(s)	428, 821
CspAI	ACCGGT	1 cut(s)	39
CviAII	CATG	3 cut(s)	155, 323, 667
CviQI	GTAC	2 cut(s)	428, 821
DdeI	CTNAG	3 cut(s)	503, 587, 834
DpnI	GATC	9 cut(s)	30, 269, 284, 308, 527, 540, 566, 605, 736
DpnII	GATC	9 cut(s)	28, 267, 282, 306, 525, 538, 564, 603, 734
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	795
FaeI	CATG	3 cut(s)	158, 326, 670
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	154, 322, 666
FbaI	TGATCA	3 cut(s)	267, 282, 306
Fnu4HI	GCNGC	5 cut(s)	146, 351, 434, 437, 573
FokI	GGATG	2 cut(s)	73, 776
Fsp4HI	GCNGC	5 cut(s)	146, 351, 434, 437, 573
FspBI	CTAG	1 cut(s)	488
FspI	TGCGCA	1 cut(s)	229
GlaI	GCGC	2 cut(s)	229, 780
GluI	GCNGC	5 cut(s)	146, 351, 434, 437, 573
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	4 cut(s)	40, 91, 679, 740
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	2 cut(s)	230, 781
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	3 cut(s)	158, 326, 670
Hin6I	GCGC	2 cut(s)	228, 779
HinP1I	GCGC	2 cut(s)	228, 779
HinfI	GANTC	6 cut(s)	592, 615, 627, 691, 801, 815
HpaII	CCGG	4 cut(s)	40, 91, 679, 740
HphI	GGTGA	3 cut(s)	262, 301, 700
Hpy166II	GTNNAC	2 cut(s)	428, 494
Hpy188I	TCNGA	4 cut(s)	287, 306, 696, 728
Hpy188III	TCNNGA	7 cut(s)	32, 195, 280, 542, 601, 812, 836
Hpy8I	GTNNAC	2 cut(s)	428, 494
Hpy99I	CGWCG	3 cut(s)	515, 716, 722
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	3 cut(s)	12, 367, 561
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	4 cut(s)	63, 116, 145, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 389
HpyF3I	CTNAG	3 cut(s)	503, 587, 834
HpySE526I	ACGT	1 cut(s)	424
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	3 cut(s)	158, 326, 670
HspAI	GCGC	2 cut(s)	228, 779
Ksp22I	TGATCA	3 cut(s)	267, 282, 306
Kzo9I	GATC	9 cut(s)	28, 267, 282, 306, 525, 538, 564, 603, 734
LmnI	GCTCC	4 cut(s)	93, 197, 455, 742
Lsp1109I	GCAGC	5 cut(s)	157, 362, 423, 445, 584
LweI	GCATC	3 cut(s)	366, 516, 778
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	424
MalI	GATC	9 cut(s)	30, 269, 284, 308, 527, 540, 566, 605, 736
MboI	GATC	9 cut(s)	28, 267, 282, 306, 525, 538, 564, 603, 734
MboII	GAAGA	4 cut(s)	6, 334, 535, 622
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	3 cut(s)	28, 525, 538
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	3 cut(s)	202, 231, 795
MlyI	GAGTC	1 cut(s)	636
MmeI	TCCRAC	1 cut(s)	741
MnlI	CCTC	9 cut(s)	183, 283, 463, 477, 538, 650, 655, 664, 668
MseI	TTAA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	436
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	4 cut(s)	40, 91, 679, 740
MspR9I	CCNGG	2 cut(s)	91, 680
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	151, 389
NciI	CCSGG	2 cut(s)	91, 680
NdeII	GATC	9 cut(s)	28, 267, 282, 306, 525, 538, 564, 603, 734
NlaIII	CATG	3 cut(s)	158, 326, 670
NlaIV	GGNNCC	1 cut(s)	9
NsbI	TGCGCA	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	542
PfeI	GAWTC	5 cut(s)	592, 615, 691, 801, 815
PflFI	GACNNNGTC	2 cut(s)	626, 716
PfoI	TCCNGGA	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	147, 352, 435, 438, 574
Ple19I	CGATCG	2 cut(s)	606, 737
PleI	GAGTC	1 cut(s)	635
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	635
Ppu21I	YACGTR	1 cut(s)	425
PspCI	CACGTG	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	2 cut(s)	436, 439
PsuI	RGATCY	3 cut(s)	28, 525, 538
PsyI	GACNNNGTC	2 cut(s)	626, 716
PvuI	CGATCG	2 cut(s)	606, 737
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	2 cut(s)	429, 822
RsaNI	GTAC	2 cut(s)	428, 821
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	5 cut(s)	146, 351, 434, 437, 573
Sau3AI	GATC	9 cut(s)	28, 267, 282, 306, 525, 538, 564, 603, 734
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	822
SchI	GAGTC	1 cut(s)	636
ScrFI	CCNGG	2 cut(s)	91, 680
SduI	GDGCHC	1 cut(s)	98
SfaNI	GCATC	3 cut(s)	366, 516, 778
SfcI	CTRYAG	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	542
SgrAI	CRCCGGYG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	149, 542
SmoI	CTYRAG	2 cut(s)	149, 542
Sse9I	AATT	3 cut(s)	202, 231, 795
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	89, 678
TaaI	ACNGT	3 cut(s)	12, 367, 561
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	9 cut(s)	238, 374, 510, 543, 555, 606, 771, 799, 813
TaqII	GACCGA	1 cut(s)	639
TasI	AATT	3 cut(s)	202, 231, 795
TatI	WGTACW	2 cut(s)	427, 820
TfiI	GAWTC	5 cut(s)	592, 615, 691, 801, 815
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseI	GCWGC	5 cut(s)	145, 350, 433, 436, 572
TspDTI	ATGAA	3 cut(s)	311, 328, 655
TspGWI	ACGGA	1 cut(s)	637
Tth111I	GACNNNGTC	2 cut(s)	626, 716
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	795
XhoI	CTCGAG	1 cut(s)	542
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.