Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

67541074 .. 67541373

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG501300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACGGCACCGTCTTCTCCTCCAAAAGATCTGGACCACCGGTGGGACACCAAACAAACCTGCATATTCCACCGCCATAGCAACCCATCCCGGAGCATGCTTCCTTGCCCATCTGCAAAACCACTCCCAGGTATGCCGCGAGACTCCATCTTTGATGAATCAAGCCCTTCGCCGTCAAACCATCCACAAGAACCCATAAGCACAGCCGCATACCTCCACCCACAACTGTCAACGTTCAGATCATTTGAAGAAGGCCGCCGATCTCGTTTTCCTGTCAGGCATGAAATCGTAGAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.28

Weight (kDa)

7.91

Isoelectric Point (pI)

103.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	139
AciI	CCGC	4 cut(s)	73, 137, 207, 256
AclI	AACGTT	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	43, 128
AgeI	ACCGGT	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AsiGI	ACCGGT	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	6
BccI	CCATC	4 cut(s)	94, 118, 155, 189
BceAI	ACGGC	2 cut(s)	21, 157
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	3 cut(s)	137, 207, 256
BlsI	GCNGC	3 cut(s)	138, 208, 257
Bme1390I	CCNGG	2 cut(s)	91, 129
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	91, 129
BpiI	GAAGAC	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 128
Bse118I	RCCGGY	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	86, 181
BseLI	CCNNNNNNNGG	2 cut(s)	43, 128
BseRI	GAGGAG	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	40, 91
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	43, 128
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	28, 239, 260
BspACI	CCGC	4 cut(s)	73, 137, 207, 256
BspANI	GGCC	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	28, 239, 260
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	12, 228, 297
BstC8I	GCNNGC	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	86, 181
BstFNI	CGCG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	31, 242, 263
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	3 cut(s)	28, 239, 260
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	89, 127
BstSFI	CTRYAG	1 cut(s)	296
BstUI	CGCG	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	86, 181
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	34
CspAI	ACCGGT	1 cut(s)	39
CviAII	CATG	2 cut(s)	97, 281
CviJI	RGCY	3 cut(s)	165, 206, 255
CviKI_1	RGCY	3 cut(s)	165, 206, 255
DpnI	GATC	3 cut(s)	30, 241, 262
DpnII	GATC	3 cut(s)	28, 239, 260
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	100, 284
FaiI	YATR	7 cut(s)	65, 78, 98, 134, 197, 211, 282
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	96, 280
Fnu4HI	GCNGC	3 cut(s)	137, 207, 256
FokI	GGATG	2 cut(s)	73, 168
Fsp4HI	GCNGC	3 cut(s)	137, 207, 256
GluI	GCNGC	3 cut(s)	137, 207, 256
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	40, 91
Hin1II	CATG	2 cut(s)	100, 284
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	143, 158
HpaII	CCGG	2 cut(s)	40, 91
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	2 cut(s)	177, 245
HpyCH4III	ACNGT	3 cut(s)	12, 228, 297
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	63, 116
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	100, 284
Kzo9I	GATC	3 cut(s)	28, 239, 260
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	8 cut(s)	17, 53, 73, 104, 114, 141, 262, 285
MaeII	ACGT	1 cut(s)	233
MalI	GATC	3 cut(s)	30, 241, 262
MboI	GATC	3 cut(s)	28, 239, 260
MboII	GAAGA	2 cut(s)	6, 260
MflI	RGATCY	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	2 cut(s)	30, 224
MspI	CCGG	2 cut(s)	40, 91
MspR9I	CCNGG	2 cut(s)	91, 129
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	139
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	3 cut(s)	28, 239, 260
NlaIII	CATG	2 cut(s)	100, 284
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	100
PaeI	GCATGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	138, 208, 257
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	28
SatI	GCNGC	3 cut(s)	137, 207, 256
Sau3AI	GATC	3 cut(s)	28, 239, 260
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	91, 129
SetI	ASST	4 cut(s)	62, 133, 216, 236
SfcI	CTRYAG	1 cut(s)	296
SgrAI	CRCCGGYG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	34
SphI	GCATGC	1 cut(s)	100
SsiI	CCGC	4 cut(s)	73, 137, 207, 256
StyD4I	CCNGG	2 cut(s)	89, 127
TaaI	ACNGT	3 cut(s)	12, 228, 297
TaiI	ACGT	1 cut(s)	236
TauI	GCSGC	3 cut(s)	139, 209, 258
TfiI	GAWTC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	171, 297
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.