Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Forward (+)

37874954 .. 37877845

Gene Structure 2892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029385

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTGGTCTGGTGGAGTATTGTTTCGGAAAATATATCATCAGTATCTGAGCAGCAGCGTCGGTCTGTGCAAGGGGGCCGAGACTTGCCAACAAGACCAGACCAGATGCTTTTATTCAAGAGGTTTGAGGATTGGTACAATTGTTGGACTTGGTTCAAGCAAAGAGAAGGGGTGCCTCCTCACAAACGGGGTCGCACTGACCAGGCCCGTGTCAAGGAAGTTGGTGACATGATGATGACGGAGCTGACGACCGAAGCTCCGCAAGAGTTCTTGGAGGAGAGCTTGTCGAGGCTAGGTTTACAAAAGCTGAGCATCGACGAGGTGCAGAAGATGTCGTGGCAGGATCTCGAGGATGAAATCAAACTGTGGATCAAAGCAGCCAACGTCTCACTTCGGATTCTGTTCCAGATCAAGCGTAGACTAGTTGACCGAGTCTTCTACGGCCTCTCCTCTGCCACTGACCTCTCGTTCATGGAGATACTCAACTTCACCGAAGCCGTTGCAATCGGAAGCCGGCTTCCGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

177

Amino Acids

20.61

Weight (kDa)

5.96

Isoelectric Point (pI)

62.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	418
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	351, 377
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	118, 157
AhlI	ACTAGT	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	4 cut(s)	244, 257, 282, 307
AluI	AGCT	4 cut(s)	244, 257, 282, 307
Alw26I	GTCTC	2 cut(s)	75, 391
AlwI	GGATC	2 cut(s)	351, 377
AlwNI	CAGNNNCTG	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	3 cut(s)	76, 204, 442
ApeKI	GCWGC	3 cut(s)	52, 55, 377
AspS9I	GGNCC	2 cut(s)	76, 205
AsuHPI	GGTGA	2 cut(s)	236, 481
AvaI	CYCGRG	1 cut(s)	347
BaeI	ACNNNNGTAYC	2 cut(s)	127, 160
BanI	GGYRCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	64, 67, 389
BceAI	ACGGC	2 cut(s)	457, 482
BcgI	CGANNNNNNTGC	4 cut(s)	41, 75, 482, 516
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	75, 391
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	2 cut(s)	293, 422
BisI	GCNGC	3 cut(s)	53, 56, 378
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	3 cut(s)	54, 57, 379
Bme1390I	CCNGG	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	76, 205
BmiI	GGNNCC	2 cut(s)	77, 174
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	96, 321
BpiI	GAAGAC	1 cut(s)	427
Bpu1102I	GCTNAGC	1 cut(s)	308
BsaXI	ACNNNNNCTCC	6 cut(s)	241, 269, 271, 299, 431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	39, 299
BseRI	GAGGAG	3 cut(s)	168, 290, 439
BseXI	GCAGC	3 cut(s)	64, 67, 389
BsgI	GTGCAG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	78, 206, 444
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	75, 391
BsmBI	CGTCTC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	78, 206, 444
BsoBI	CYCGRG	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	343, 369, 408
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	3 cut(s)	78, 206, 444
BspCNI	CTCAG	2 cut(s)	40, 300
BspLI	GGNNCC	2 cut(s)	77, 174
BspPI	GGATC	2 cut(s)	351, 377
BspT107I	GGYRCC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	513
BssMI	GATC	3 cut(s)	343, 369, 408
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	48, 308
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	3 cut(s)	346, 372, 411
BstMAI	GTCTC	2 cut(s)	75, 391
BstMBI	GATC	3 cut(s)	343, 369, 408
BstMCI	CGRYCG	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	64, 67, 389
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	78, 206, 444
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	195, 456
Cac8I	GCNNGC	1 cut(s)	515
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	2 cut(s)	76, 205
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	229, 472
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	48, 308
DpnI	GATC	3 cut(s)	345, 371, 410
DpnII	GATC	3 cut(s)	343, 369, 408
Eco88I	CYCGRG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	391
FaeI	CATG	2 cut(s)	232, 475
FaiI	YATR	3 cut(s)	35, 230, 473
FatI	CATG	2 cut(s)	228, 471
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	53, 56, 378
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	53, 56, 378
FspBI	CTAG	2 cut(s)	293, 422
GluI	GCNGC	3 cut(s)	53, 56, 378
HaeIII	GGCC	3 cut(s)	78, 206, 444
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	232, 475
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	2 cut(s)	397, 432
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	2 cut(s)	236, 481
Hpy166II	GTNNAC	3 cut(s)	299, 419, 427
Hpy188I	TCNGA	5 cut(s)	28, 49, 396, 509, 522
Hpy188III	TCNNGA	3 cut(s)	118, 347, 406
Hpy8I	GTNNAC	3 cut(s)	299, 419, 427
Hpy99I	CGWCG	2 cut(s)	63, 320
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	70, 325, 503
HpyF3I	CTNAG	2 cut(s)	48, 308
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	232, 475
KroI	GCCGGC	1 cut(s)	513
KroNI	GCCGGC	1 cut(s)	515
Kzo9I	GATC	3 cut(s)	343, 369, 408
LmnI	GCTCC	2 cut(s)	241, 262
LpnPI	CCDG	7 cut(s)	111, 116, 188, 215, 326, 419, 527
Lsp1109I	GCAGC	3 cut(s)	64, 67, 389
LweI	GCATC	2 cut(s)	96, 321
MaeI	CTAG	2 cut(s)	293, 422
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	3 cut(s)	345, 371, 410
MboI	GATC	3 cut(s)	343, 369, 408
MboII	GAAGA	2 cut(s)	340, 427
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	125
MroNI	GCCGGC	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	203
NaeI	GCCGGC	1 cut(s)	515
NdeII	GATC	3 cut(s)	343, 369, 408
NgoMIV	GCCGGC	1 cut(s)	513
NlaIII	CATG	2 cut(s)	232, 475
NlaIV	GGNNCC	2 cut(s)	77, 174
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	397
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	54, 57, 379
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	77, 174
PspPI	GGNCC	2 cut(s)	76, 205
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	233
SatI	GCNGC	3 cut(s)	53, 56, 378
Sau3AI	GATC	3 cut(s)	343, 369, 408
Sau96I	GGNCC	2 cut(s)	76, 205
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	9 cut(s)	125, 246, 259, 284, 298, 309, 324, 387, 465
SfaNI	GCATC	2 cut(s)	96, 321
Sfr274I	CTCGAG	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	2 cut(s)	293, 422
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	3 cut(s)	287, 315, 348
TaqII	GACCGA	3 cut(s)	51, 266, 444
TasI	AATT	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	397
TscAI	CASTG	2 cut(s)	202, 463
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	3 cut(s)	52, 55, 377
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	369, 460
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	202, 463
Tth111I	GACNNNGTC	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	418
XspI	CTAG	2 cut(s)	293, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.