Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

42196856 .. 42197654

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGACGGCACCATCTTCCCCTCCAAAAGATCTGGACCACCTGTTGGACACCAAACAAACCTGCATATTCCACCGCCATAGCAACCCATCCCGGAGCATGCTTCCTTGCCCATCTGCAAAACCAATCCCAGGTATGCCACAAGACACCATCTTTGATGAATCAAGCCCTTCGCCGTCAAACCGCCCCCAAGAACCCATAAGCACAGCCGCATACCTCCACCCACAACCGTCAACGTCCAGATCCGATGAAGGAGGCCGCCGATCCCGTTTTCCTGTCAGGCATGAAATCGTAGAACTGTCATCGCCGCCATTGAGAACAAGTAGCCATATTGCACCAGCGCCGCGCCTCAACCACCACAGAACCTCCCAAAACCCGTCCAGCAGCAAACCCCCCACACCGGTGGAGCCAAAGGCCCACGCCGACGCTAGGACGCCGCCGGACGAGAGCCACCAAGTAAAACTGAAGAAAACCAACTCTCTGTTTTGCAACCCTAGAGCTCCGAGAAAAGTGTTTCACATTGATATTGATATCTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.8

Weight (kDa)

9.42

Isoelectric Point (pI)

80.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccII	CGCG	1 cut(s)	343
AciI	CCGC	7 cut(s)	73, 181, 207, 256, 305, 341, 434
AclWI	GGATC	2 cut(s)	234, 255
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	431
AfiI	CCNNNNNNNGG	4 cut(s)	43, 128, 397, 426
AgeI	ACCGGT	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	127
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	2 cut(s)	497, 537
AluI	AGCT	2 cut(s)	497, 537
Alw21I	GWGCWC	1 cut(s)	499
AlwI	GGATC	2 cut(s)	234, 255
AoxI	GGCC	2 cut(s)	253, 411
ApeKI	GCWGC	1 cut(s)	381
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AsiGI	ACCGGT	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	340, 345
AspS9I	GGNCC	2 cut(s)	34, 412
AsuC2I	CCSGG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	4 cut(s)	19, 94, 118, 155
BceAI	ACGGC	2 cut(s)	21, 157
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	91
BfaI	CTAG	2 cut(s)	426, 492
BfmI	CTRYAG	1 cut(s)	532
BfoI	RGCGCY	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	6 cut(s)	207, 256, 305, 341, 382, 434
BlsI	GCNGC	6 cut(s)	208, 257, 306, 342, 383, 435
Bme1390I	CCNGG	2 cut(s)	91, 129
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 412
BmiI	GGNNCC	2 cut(s)	9, 405
BmrFI	CCNGG	2 cut(s)	91, 129
BpuMI	CCSGG	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 128, 397, 426
Bse118I	RCCGGY	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	4 cut(s)	43, 128, 397, 426
BseXI	GCAGC	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	255, 413
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	3 cut(s)	91, 398, 437
BslI	CCNNNNNNNGG	4 cut(s)	43, 128, 397, 426
BsnI	GGCC	2 cut(s)	255, 413
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	28, 239, 260
BspACI	CCGC	7 cut(s)	73, 181, 207, 256, 305, 341, 434
BspANI	GGCC	2 cut(s)	255, 413
BspFNI	CGCG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	9, 405
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	234, 255
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	28, 239, 260
BssNI	GRCGYC	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	228, 297
BstACI	GRCGYC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	2 cut(s)	340, 345
BstKTI	GATC	3 cut(s)	31, 242, 263
BstMBI	GATC	3 cut(s)	28, 239, 260
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	89, 127
BstSFI	CTRYAG	1 cut(s)	532
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	393
BstX2I	RGATCY	2 cut(s)	28, 239
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	2 cut(s)	28, 239
BsuRI	GGCC	2 cut(s)	255, 413
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	2 cut(s)	340, 345
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	34, 412
CseI	GACGC	2 cut(s)	431, 439
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	2 cut(s)	97, 281
CviJI	RGCY	9 cut(s)	165, 206, 255, 324, 406, 413, 447, 497, 537
CviKI_1	RGCY	9 cut(s)	165, 206, 255, 324, 406, 413, 447, 497, 537
DpnI	GATC	3 cut(s)	30, 241, 262
DpnII	GATC	3 cut(s)	28, 239, 260
Ecl136II	GAGCTC	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	499
FaeI	CATG	2 cut(s)	100, 284
FaiI	YATR	8 cut(s)	65, 78, 98, 134, 197, 211, 282, 327
FatI	CATG	2 cut(s)	96, 280
Fnu4HI	GCNGC	6 cut(s)	207, 256, 305, 341, 382, 434
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	6 cut(s)	207, 256, 305, 341, 382, 434
FspBI	CTAG	2 cut(s)	426, 492
GlaI	GCGC	2 cut(s)	339, 344
GluI	GCNGC	6 cut(s)	207, 256, 305, 341, 382, 434
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	255, 413
HapII	CCGG	3 cut(s)	91, 398, 437
HgaI	GACGC	2 cut(s)	431, 439
HhaI	GCGC	2 cut(s)	340, 345
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	2 cut(s)	100, 284
Hin6I	GCGC	2 cut(s)	338, 343
HinP1I	GCGC	2 cut(s)	338, 343
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	3 cut(s)	91, 398, 437
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	244, 501
Hpy188III	TCNNGA	2 cut(s)	32, 237
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	177, 242
HpyCH4III	ACNGT	2 cut(s)	228, 297
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	63, 116, 332, 486
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	2 cut(s)	100, 284
HspAI	GCGC	2 cut(s)	338, 343
Kzo9I	GATC	3 cut(s)	28, 239, 260
LmnI	GCTCC	3 cut(s)	93, 403, 502
Lsp1109I	GCAGC	1 cut(s)	393
MaeI	CTAG	2 cut(s)	426, 492
MaeII	ACGT	1 cut(s)	233
MalI	GATC	3 cut(s)	30, 241, 262
MboI	GATC	3 cut(s)	28, 239, 260
MboII	GAAGA	2 cut(s)	6, 475
MflI	RGATCY	2 cut(s)	28, 239
MhlI	GDGCHC	1 cut(s)	499
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	5 cut(s)	30, 224, 245, 356, 373
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	3 cut(s)	91, 398, 437
MspR9I	CCNGG	2 cut(s)	91, 129
MteI	GCGCNGCGC	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	343
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	3 cut(s)	28, 239, 260
NlaIII	CATG	2 cut(s)	100, 284
NlaIV	GGNNCC	2 cut(s)	9, 405
NspI	RCATGY	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	397
PkrI	GCNGC	6 cut(s)	208, 257, 306, 342, 383, 435
Psp124BI	GAGCTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	9, 405
PspPI	GGNCC	2 cut(s)	34, 412
PsuI	RGATCY	2 cut(s)	28, 239
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	499
SatI	GCNGC	6 cut(s)	207, 256, 305, 341, 382, 434
Sau3AI	GATC	3 cut(s)	28, 239, 260
Sau96I	GGNCC	2 cut(s)	34, 412
ScrFI	CCNGG	2 cut(s)	91, 129
SduI	GDGCHC	1 cut(s)	499
SetI	ASST	8 cut(s)	42, 62, 133, 216, 236, 365, 499, 539
SfcI	CTRYAG	1 cut(s)	532
SgrAI	CRCCGGYG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	100
SsiI	CCGC	7 cut(s)	73, 181, 207, 256, 305, 341, 434
SspMI	CTAG	2 cut(s)	426, 492
SstI	GAGCTC	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	89, 127
TaaI	ACNGT	2 cut(s)	228, 297
TaiI	ACGT	1 cut(s)	236
TauI	GCSGC	5 cut(s)	209, 258, 307, 343, 436
TfiI	GAWTC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	381
TspDTI	ATGAA	3 cut(s)	171, 261, 297
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	2 cut(s)	426, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.