Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003033

Physical Location & Seq

Genomic Coordinates Reverse (-)

67629126 .. 67629320

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG467900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTCGCGTGTCTTGTACGAGTTCAGGACCCTAGACCTGATGCAGCAGACCTTGTTCTGGCTGGAGGACGAGTTCAGGACCTTGGTGGAGCGCGGCCGTGAGTCGCTCGATCTCAATCGCGCGTTTCGGAGCGAGTCAAATGGTAACTTGTCGTTTGACTCGGGGGCTGAAGACGACGAAGATGAGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001101 GO:0002237 GO:0002238 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016192 GO:0023051 GO:0023056 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043621 GO:0043900 GO:0043902 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045229 GO:0046903 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0065007 GO:0070062 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090333 GO:0098542 GO:0099023 GO:0099568 GO:1900150 GO:1900424 GO:1900426 GO:1901419 GO:1901421 GO:1901700 GO:1902288 GO:1902290 GO:1903561 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

64

Amino Acids

7.64

Weight (kDa)

4.17

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58430
fragaria_vesca	FvH4_3g39790
malus_domestica	MD03G1056800.v1.1
prunus_persica	Prupe.6G048000_v2.0.a1
pyrus_communis	pycom03g04520 pycom11g04860
rosa_chinensis	RchiOBHm_Chr5g0004641 RchiOBHm_Chr5g0071681
rosa_laevigata	RLG00000002358 RLG00000008736 RLG00000018357 RLG00000026108 RLG00000029385 RLG00000036239
rosa_multiflora	Rmu_sc0002255.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005050 Rroxscaffold_1G00009490 Rroxscaffold_4G00312970
rosa_rugosa	Rorug05G0399200 Rorug06G0105500
rosa_samantha	Rh1BG001700 Rh1DG215500 Rh2CG371300 Rh5AG470200 Rh5BG236300 Rh5BG489700 Rh5BG566000 Rh5CG513500 Rh5CG588000 Rh5DG500500 Rh6AG501300 Rh6BG021300 Rh6BG467900 Rh7AG147100 Rh7BG007900 Rh7CG151300
rosa_wichuraiana	Rw5G036600 Rw5G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	7, 93, 120, 122
AciI	CCGC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	57
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	93, 122
AspS9I	GGNCC	2 cut(s)	27, 78
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	27, 78
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	44, 94
BlsI	GCNGC	2 cut(s)	45, 95
Bme18I	GGWCC	2 cut(s)	27, 78
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	27, 78
BmiI	GGNNCC	1 cut(s)	29
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	4 cut(s)	7, 93, 120, 122
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	57
BsnI	GGCC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	96
BspFNI	CGCG	4 cut(s)	7, 93, 120, 122
BspLI	GGNNCC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	81
BstFNI	CGCG	4 cut(s)	7, 93, 120, 122
BstHHI	GCGC	2 cut(s)	93, 122
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMCI	CGRYCG	1 cut(s)	97
BstUI	CGCG	4 cut(s)	7, 93, 120, 122
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	96
CfoI	GCGC	2 cut(s)	93, 122
Cfr13I	GGNCC	2 cut(s)	27, 78
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	3 cut(s)	61, 96, 167
CviKI_1	RGCY	3 cut(s)	61, 96, 167
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	27, 78
Eco52I	CGGCCG	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	160
EcoO109I	RGGNCCY	2 cut(s)	27, 78
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	44, 94
Fsp4HI	GCNGC	2 cut(s)	44, 94
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	92, 121
GluI	GCNGC	2 cut(s)	44, 94
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	93, 122
Hin6I	GCGC	2 cut(s)	91, 120
HinP1I	GCGC	2 cut(s)	91, 120
HinfI	GANTC	3 cut(s)	101, 134, 158
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	25, 76
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	43
HspAI	GCGC	2 cut(s)	91, 120
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	2 cut(s)	88, 129
LpnPI	CCDG	5 cut(s)	10, 43, 47, 50, 61
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	182, 191
MlyI	GAGTC	3 cut(s)	110, 143, 152
MnlI	CCTC	3 cut(s)	58, 178, 181
MvnI	CGCG	4 cut(s)	7, 93, 120, 122
NdeII	GATC	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	45, 95
PleI	GAGTC	3 cut(s)	109, 142, 152
PpsI	GAGTC	3 cut(s)	109, 142, 152
PpuMI	RGGWCCY	2 cut(s)	27, 78
Psp5II	RGGWCCY	2 cut(s)	27, 78
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	27, 78
PspPPI	RGGWCCY	2 cut(s)	27, 78
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	44, 94
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	2 cut(s)	27, 78
SchI	GAGTC	3 cut(s)	110, 143, 152
SetI	ASST	3 cut(s)	39, 53, 83
SfaNI	GCATC	1 cut(s)	30
SinI	GGWCC	2 cut(s)	27, 78
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	81
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	27, 78
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.