Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Reverse (-)

21482000 .. 21487788

Gene Structure 5789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGGGCCTGCAATTTCAATTGCAGATGAGTTGGCAGCCGAGTCTACTGAATCAGAAGCGGAAGACAGGCCCGCCTCTAGGGTTGAAGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTTCAGTGCCTCACCTACACCCCTCCTCTCGCCAATTTCTGCCTCCGAAACCAGCACTCCTCCCTCTGTGACTCTTCCGACAAGGAACGCAAGCGCGAGTGTCCGTTCTGCATGCTGGAGAGGCGAATAGTCCGCTCCCTCAGTGTGGATCTCAGTCTAGATGCGCCGGCCAAGATTCGGAGCTGTCTGAATATTTTCGCCGAACACTTTCGCCACGGTCGTCAGGAAGACGCTCATGAGTTCCTGCGTTACGTTATTGATGCTTGCCACAACACTTGCCTTCGCCTGAAGAAGCTTCGGCGCAACATCACCGGCAATGGTTTGTCCAACGGCAACGGCCACGCCAACGGGAATGGTCAGGCCAACGGCAAAGCCAATGGGACGGCTCCGGCGTCGTCCACGGTGGTGATGGAGATATTCGGGGGAGCTATGCAGAGCCAGGTGAAGTGTCTATCCTGTGGCACAGAGTCCAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAATTCGCTTAAAGACGCCTTGCAAAGGTTCTTCCAGTCTGAGCTTTTGGATGGCCAAAACAAGTACAAGTGCGAAAGATGTAACAAATTGGTGGCGGCTAGGAAGCAAATGTCTATACTTCAAGCACCTAATGTTCTTGTAATCCAACTTAAGAGATTTGAGGGTCTATTGGGTGGGAAGATTGATAAATCCATTGCATTTGAAGAGTTTTTGGTGCTGTCGAGCTTCATGTGCAAAACAAGTCAGGATCCACGTCCAGAATATAAGCTTTGTGGTACTATTGTGCATTCTGGTTTTTCACCCGAGTCTGGTCATTATTATGCATATATTAAGGATGCGATGGGTCGTTGGTATTGCTGCAACGATCAGTTTGTCTCTCTTTCAACTTTGCAAGAGGTCTTATCTGAAAAGGTTTACATCCTTTTCTTCTCCCGTACCAACCAAAGGTCGGTTAATGCTGCTTCAAATGGGTTAAGGTCTCAAAATTGTAATGGTCATGAAGCTTCCAAAAAACCGAAGCCTGCTCTTCCACCAAAAGGACCACAAATAAAAATTTATGAACAGTCTTCTTGGAAGGATATTTCTACTAAATCTCAGGTTGATAAAGTGCCTTCAGGCCCACGGATGAAGTTTAACATCAATGGAAACTTGAGCACCAAAAGAACTCCTGCAACTGATAATGGAAACATTGCTTACAAGAACCAATCTGTGGGATCAAATGGGGAGGTGAAGGACTCGGTTAGTTTGGACAAAAGTGAGAAAGCCAAGATGACTTTGATAAATGGGGATGGTTTGAACGGGAATATAACATCTGATACTGTTGAAGCTAACAACACCCAACCATTTTCTTCACCAATAGAAAATGGTAGTGTGGGTTCAGTGAAATCCGAACTCTCTGAAGTAACTGCTTCAGTGAAAACCGAACTCCCTGATCACTCTGAATTGGATAGCAGTGGTCCCAAAGGTCACTCCATGGTCCTTGGGCCCAAAAGGAAATCTCGGGATTCATGCATTTTGTTTGAACATGATGCTCAATCTCTGGAAAAAGTTGAAGAATTGAAGGCAGGTCTCAAGAAAGAAGCTCTCTCAGTTTTGCGCTCATGCGGTTGGGCAGATGAGGTTTTCAGTTTTATGCGTTCCCGGAAGAGGTTATGTGTAGATCAAGTTGGAATCACTCAGAATGGTGATGAAGCAAAGAAACTGTTGATCAGGGATTCCAAATCAACTTTTATTTCAAAGATACCCGAGTCTTTGAAGGGGGGCTTCATCAAACGTATTAAATCATTTAGCCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

645

Amino Acids

71.4

Weight (kDa)

9.13

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	27 - 356	1.4e-55	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	27 - 337	2.7e-18	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1694
AccB7I	CCANNNNNTGG	1 cut(s)	1348
AccBSI	CCGCTC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	1 cut(s)	216
AciI	CCGC	5 cut(s)	58, 71, 253, 734, 1743
AclWI	GGATC	4 cut(s)	276, 881, 894, 1360
AcoI	YGGCCR	3 cut(s)	288, 457, 691
AcsI	RAATTY	1 cut(s)	1191
AcuI	CTGAAG	5 cut(s)	107, 428, 1236, 1533, 1557
AcyI	GRCGYC	2 cut(s)	512, 654
AfaI	GTAC	3 cut(s)	704, 916, 1075
AflII	CTTAAG	1 cut(s)	788
AjiI	CACGTC	1 cut(s)	893
AjnI	CCWGG	1 cut(s)	558
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	9 cut(s)	303, 415, 548, 682, 864, 907, 1142, 1466, 1721
AluI	AGCT	9 cut(s)	303, 415, 548, 682, 864, 907, 1142, 1466, 1721
Alw21I	GWGCWC	1 cut(s)	1295
Alw26I	GTCTC	3 cut(s)	1018, 1122, 1712
AlwI	GGATC	4 cut(s)	276, 881, 894, 1360
Ama87I	CYCGRG	3 cut(s)	941, 1638, 1883
AoxI	GGCC	8 cut(s)	4, 67, 288, 457, 480, 691, 1255, 1622
ApaI	GGGCCC	1 cut(s)	1626
ApeKI	GCWGC	3 cut(s)	34, 996, 1097
ApoI	RAATTY	1 cut(s)	1191
Asp700I	GAANNNNTTC	2 cut(s)	314, 327
AspLEI	GCGC	4 cut(s)	216, 286, 423, 1737
AspS9I	GGNCC	8 cut(s)	4, 68, 1178, 1256, 1595, 1615, 1622, 1623
AsuC2I	CCSGG	1 cut(s)	1780
AsuHPI	GGTGA	8 cut(s)	124, 421, 538, 574, 930, 1378, 1482, 1835
AvaI	CYCGRG	3 cut(s)	941, 1638, 1883
AvaII	GGWCC	3 cut(s)	1178, 1595, 1615
BaeGI	GKGCMC	1 cut(s)	1626
BaeI	ACNNNNGTAYC	4 cut(s)	906, 939, 1871, 1904
BalI	TGGCCA	1 cut(s)	693
BamHI	GGATCC	1 cut(s)	886
BanII	GRGCYC	1 cut(s)	1626
BbsI	GAAGAC	3 cut(s)	68, 354, 1197
Bbv12I	GWGCWC	1 cut(s)	1295
BbvI	GCAGC	3 cut(s)	46, 983, 1084
BccI	CCATC	4 cut(s)	523, 683, 973, 1421
BceAI	ACGGC	4 cut(s)	466, 472, 502, 519
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	2 cut(s)	1570, 1845
BcnI	CCSGG	1 cut(s)	1780
BcoDI	GTCTC	3 cut(s)	1018, 1122, 1712
BfaI	CTAG	3 cut(s)	77, 278, 738
BfrI	CTTAAG	1 cut(s)	788
BfuAI	ACCTGC	1 cut(s)	1694
BisI	GCNGC	4 cut(s)	35, 735, 997, 1098
BlsI	GCNGC	4 cut(s)	36, 736, 998, 1099
Bme1390I	CCNGG	2 cut(s)	560, 1780
Bme18I	GGWCC	3 cut(s)	1178, 1595, 1615
BmeT110I	CYCGRG	3 cut(s)	941, 1638, 1883
BmgBI	CACGTC	1 cut(s)	893
BmgT120I	GGNCC	8 cut(s)	4, 68, 1178, 1256, 1595, 1615, 1622, 1623
BmiI	GGNNCC	4 cut(s)	507, 888, 1597, 1624
BmrFI	CCNGG	2 cut(s)	560, 1780
BmsI	GCATC	4 cut(s)	271, 370, 964, 1657
BpiI	GAAGAC	3 cut(s)	68, 354, 1197
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	1309, 1694
BpuMI	CCSGG	1 cut(s)	1780
BsaHI	GRCGYC	2 cut(s)	512, 654
BsaI	GGTCTC	2 cut(s)	1122, 1712
BsaJI	CCNNGG	6 cut(s)	91, 334, 519, 1259, 1611, 1618
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse118I	RCCGGY	2 cut(s)	286, 431
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	3 cut(s)	442, 831, 1326
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	6 cut(s)	91, 334, 519, 1259, 1611, 1618
BseGI	GGATG	5 cut(s)	694, 979, 1056, 1269, 1432
BseMI	GCAATG	3 cut(s)	442, 831, 1326
BseMII	CTCAG	6 cut(s)	274, 286, 669, 1247, 1740, 1829
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	2 cut(s)	135, 169
BseSI	GKGCMC	1 cut(s)	1626
BseXI	GCAGC	3 cut(s)	46, 983, 1084
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	8 cut(s)	6, 69, 290, 459, 482, 693, 1257, 1624
BsiEI	CGRYCG	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	1295
BsiHKCI	CYCGRG	3 cut(s)	941, 1638, 1883
BsiSI	CCGG	4 cut(s)	287, 432, 509, 1780
BslFI	GGGAC	2 cut(s)	514, 1581
BsmAI	GTCTC	3 cut(s)	1018, 1122, 1712
BsmFI	GGGAC	2 cut(s)	514, 1581
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	8 cut(s)	6, 69, 290, 459, 482, 693, 1257, 1624
Bso31I	GGTCTC	2 cut(s)	1122, 1712
BsoBI	CYCGRG	3 cut(s)	941, 1638, 1883
Bsp120I	GGGCCC	1 cut(s)	1622
Bsp1286I	GDGCHC	2 cut(s)	1295, 1626
Bsp143I	GATC	7 cut(s)	268, 886, 1003, 1352, 1570, 1798, 1845
Bsp19I	CCATGG	1 cut(s)	1611
BspACI	CCGC	5 cut(s)	58, 71, 253, 734, 1743
BspANI	GGCC	8 cut(s)	6, 69, 290, 459, 482, 693, 1257, 1624
BspCNI	CTCAG	6 cut(s)	273, 285, 670, 1246, 1739, 1828
BspFNI	CGCG	1 cut(s)	216
BspHI	TCATGA	2 cut(s)	355, 1135
BspLI	GGNNCC	4 cut(s)	507, 888, 1597, 1624
BspMI	ACCTGC	1 cut(s)	1694
BspPI	GGATC	4 cut(s)	276, 881, 894, 1360
BspQI	GCTCTTC	1 cut(s)	1170
BspTI	CTTAAG	1 cut(s)	788
BspTNI	GGTCTC	2 cut(s)	1122, 1712
BsrBI	CCGCTC	1 cut(s)	255
BsrDI	GCAATG	3 cut(s)	442, 831, 1326
BsrFI	RCCGGY	2 cut(s)	286, 431
BsrI	ACTGG	1 cut(s)	673
BssAI	RCCGGY	2 cut(s)	286, 431
BssECI	CCNNGG	6 cut(s)	91, 334, 519, 1259, 1611, 1618
BssMI	GATC	7 cut(s)	268, 886, 1003, 1352, 1570, 1798, 1845
BssNI	GRCGYC	2 cut(s)	512, 654
BssT1I	CCWWGG	2 cut(s)	1611, 1618
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	5 cut(s)	338, 523, 1203, 1459, 1842
Bst6I	CTCTTC	4 cut(s)	199, 837, 1170, 1778
BstACI	GRCGYC	2 cut(s)	512, 654
BstAFI	CTTAAG	1 cut(s)	788
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	7 cut(s)	8, 71, 212, 233, 288, 385, 1161
BstDEI	CTNAG	6 cut(s)	260, 272, 678, 1233, 1726, 1815
BstDSI	CCRYGG	4 cut(s)	334, 519, 1259, 1611
BstENI	CCTNNNNNAGG	1 cut(s)	661
BstF5I	GGATG	5 cut(s)	694, 979, 1056, 1269, 1432
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	4 cut(s)	216, 286, 423, 1737
BstKTI	GATC	7 cut(s)	271, 889, 1006, 1355, 1573, 1801, 1848
BstMAI	GTCTC	3 cut(s)	1018, 1122, 1712
BstMBI	GATC	7 cut(s)	268, 886, 1003, 1352, 1570, 1798, 1845
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 241, 870
BstNI	CCWGG	1 cut(s)	560
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	558, 1778
BstSLI	GKGCMC	1 cut(s)	1626
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	46, 983, 1084
BstV2I	GAAGAC	3 cut(s)	68, 354, 1197
BstX2I	RGATCY	2 cut(s)	268, 886
BstYI	RGATCY	2 cut(s)	268, 886
BsuRI	GGCC	8 cut(s)	6, 69, 290, 459, 482, 693, 1257, 1624
BtgI	CCRYGG	4 cut(s)	334, 519, 1259, 1611
BtgZI	GCGATG	1 cut(s)	992
BtrI	CACGTC	1 cut(s)	893
BtsCI	GGATG	5 cut(s)	694, 979, 1056, 1269, 1432
BtsI	GCAGTG	1 cut(s)	1597
BtsIMutI	CAGTG	5 cut(s)	131, 268, 1524, 1557, 1597
BveI	ACCTGC	1 cut(s)	1694
Cac8I	GCNNGC	7 cut(s)	8, 71, 212, 233, 288, 385, 1161
CciI	TCATGA	2 cut(s)	355, 1135
CfoI	GCGC	4 cut(s)	216, 286, 423, 1737
Cfr10I	RCCGGY	2 cut(s)	286, 431
Cfr13I	GGNCC	8 cut(s)	4, 68, 1178, 1256, 1595, 1615, 1622, 1623
CseI	GACGC	4 cut(s)	106, 359, 501, 662
Csp6I	GTAC	3 cut(s)	703, 915, 1074
CspCI	CAANNNNNGTGG	2 cut(s)	377, 412
CviAII	CATG	8 cut(s)	232, 356, 868, 1136, 1612, 1647, 1664, 1740
CviQI	GTAC	3 cut(s)	703, 915, 1074
DdeI	CTNAG	6 cut(s)	260, 272, 678, 1233, 1726, 1815
DpnI	GATC	7 cut(s)	270, 888, 1005, 1354, 1572, 1800, 1847
DpnII	GATC	7 cut(s)	268, 886, 1003, 1352, 1570, 1798, 1845
EaeI	YGGCCR	3 cut(s)	288, 457, 691
Eam1104I	CTCTTC	4 cut(s)	199, 837, 1170, 1778
EarI	CTCTTC	4 cut(s)	199, 837, 1170, 1778
Eco130I	CCWWGG	2 cut(s)	1611, 1618
Eco24I	GRGCYC	1 cut(s)	1626
Eco31I	GGTCTC	2 cut(s)	1122, 1712
Eco47I	GGWCC	3 cut(s)	1178, 1595, 1615
Eco57I	CTGAAG	5 cut(s)	107, 428, 1236, 1533, 1557
Eco88I	CYCGRG	3 cut(s)	941, 1638, 1883
EcoNI	CCTNNNNNAGG	1 cut(s)	661
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	2 cut(s)	1611, 1618
EcoT22I	ATGCAT	2 cut(s)	964, 1652
EcoT38I	GRGCYC	1 cut(s)	1626
ErhI	CCWWGG	2 cut(s)	1611, 1618
FaeI	CATG	8 cut(s)	235, 359, 871, 1139, 1615, 1650, 1667, 1743
FalI	AAGNNNNNCTT	2 cut(s)	1886, 1918
FaqI	GGGAC	2 cut(s)	514, 1581
FatI	CATG	8 cut(s)	231, 355, 867, 1135, 1611, 1646, 1663, 1739
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	2 cut(s)	1570, 1845
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	35, 735, 997, 1098
FokI	GGATG	5 cut(s)	701, 986, 1043, 1276, 1439
FriOI	GRGCYC	1 cut(s)	1626
Fsp4HI	GCNGC	4 cut(s)	35, 735, 997, 1098
FspBI	CTAG	3 cut(s)	77, 278, 738
GlaI	GCGC	4 cut(s)	215, 285, 422, 1736
GluI	GCNGC	4 cut(s)	35, 735, 997, 1098
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	8 cut(s)	6, 69, 290, 459, 482, 693, 1257, 1624
HapII	CCGG	4 cut(s)	287, 432, 509, 1780
HgaI	GACGC	4 cut(s)	106, 359, 501, 662
HhaI	GCGC	4 cut(s)	216, 286, 423, 1737
Hin1I	GRCGYC	2 cut(s)	512, 654
Hin1II	CATG	8 cut(s)	235, 359, 871, 1139, 1615, 1650, 1667, 1743
Hin6I	GCGC	4 cut(s)	214, 284, 421, 1735
HinP1I	GCGC	4 cut(s)	214, 284, 421, 1735
HindIII	AAGCTT	3 cut(s)	413, 905, 1140
HpaII	CCGG	4 cut(s)	287, 432, 509, 1780
HphI	GGTGA	8 cut(s)	124, 421, 538, 574, 930, 1378, 1482, 1835
Hpy166II	GTNNAC	3 cut(s)	44, 519, 1054
Hpy8I	GTNNAC	3 cut(s)	44, 519, 1054
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	7 cut(s)	131, 410, 1207, 1260, 1363, 1693, 1888
HpyCH4III	ACNGT	5 cut(s)	338, 523, 1203, 1459, 1842
HpyCH4IV	ACGT	3 cut(s)	372, 892, 1912
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 241, 870
HpyF3I	CTNAG	6 cut(s)	260, 272, 678, 1233, 1726, 1815
HpySE526I	ACGT	3 cut(s)	372, 892, 1912
Hsp92I	GRCGYC	2 cut(s)	512, 654
Hsp92II	CATG	8 cut(s)	235, 359, 871, 1139, 1615, 1650, 1667, 1743
HspAI	GCGC	4 cut(s)	214, 284, 421, 1735
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	2 cut(s)	1570, 1845
Kzo9I	GATC	7 cut(s)	268, 886, 1003, 1352, 1570, 1798, 1845
LguI	GCTCTTC	1 cut(s)	1170
LmnI	GCTCC	4 cut(s)	260, 300, 511, 545
Lsp1109I	GCAGC	3 cut(s)	46, 983, 1084
LweI	GCATC	4 cut(s)	271, 370, 964, 1657
MaeI	CTAG	3 cut(s)	77, 278, 738
MaeII	ACGT	3 cut(s)	372, 892, 1912
MaeIII	GTNAC	5 cut(s)	188, 368, 719, 1540, 1604
MalI	GATC	7 cut(s)	270, 888, 1005, 1354, 1572, 1800, 1847
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	7 cut(s)	268, 886, 1003, 1352, 1570, 1798, 1845
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	2 cut(s)	268, 886
MhlI	GDGCHC	2 cut(s)	1295, 1626
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	9 cut(s)	11, 17, 154, 640, 725, 1123, 1191, 1580, 1694
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	6 cut(s)	49, 185, 596, 953, 1367, 1895
MmeI	TCCRAC	4 cut(s)	222, 471, 808, 1786
Mox20I	TGGCCA	1 cut(s)	693
Mph1103I	ATGCAT	2 cut(s)	964, 1652
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	2 cut(s)	314, 327
MscI	TGGCCA	1 cut(s)	693
MseI	TTAA	7 cut(s)	648, 789, 969, 1092, 1112, 1272, 1917
MslI	CAYNNNNRTG	2 cut(s)	524, 957
Msp20I	TGGCCA	1 cut(s)	693
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	4 cut(s)	287, 432, 509, 1780
MspR9I	CCNGG	2 cut(s)	560, 1780
MunI	CAATTG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	925
MvaI	CCWGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	102, 241, 870
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	1780
NcoI	CCATGG	1 cut(s)	1611
NdeII	GATC	7 cut(s)	268, 886, 1003, 1352, 1570, 1798, 1845
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	8 cut(s)	235, 359, 871, 1139, 1615, 1650, 1667, 1743
NlaIV	GGNNCC	4 cut(s)	507, 888, 1597, 1624
NmeAIII	GCCGAG	2 cut(s)	63, 72
NmuCI	GTSAC	2 cut(s)	188, 1604
NsiI	ATGCAT	2 cut(s)	964, 1652
NspI	RCATGY	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	524
PaeI	GCATGC	1 cut(s)	235
PagI	TCATGA	2 cut(s)	355, 1135
PciSI	GCTCTTC	1 cut(s)	1170
PcsI	WCGNNNNNNNCGW	2 cut(s)	337, 509
PctI	GAATGC	1 cut(s)	925
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	2 cut(s)	314, 327
PfeI	GAWTC	5 cut(s)	49, 295, 1643, 1809, 1853
PflMI	CCANNNNNTGG	1 cut(s)	1348
PfoI	TCCNGGA	1 cut(s)	1778
PkrI	GCNGC	4 cut(s)	36, 736, 998, 1099
PleI	GAGTC	6 cut(s)	48, 185, 595, 952, 1367, 1894
PpsI	GAGTC	6 cut(s)	48, 185, 595, 952, 1367, 1894
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	4 cut(s)	507, 888, 1597, 1624
PspOMI	GGGCCC	1 cut(s)	1622
PspPI	GGNCC	8 cut(s)	4, 68, 1178, 1256, 1595, 1615, 1622, 1623
PsrI	GAACNNNNNNTAC	2 cut(s)	1498, 1530
PsuI	RGATCY	2 cut(s)	268, 886
RsaI	GTAC	3 cut(s)	704, 916, 1075
RsaNI	GTAC	3 cut(s)	703, 915, 1074
RseI	CAYNNNNRTG	2 cut(s)	524, 957
SapI	GCTCTTC	1 cut(s)	1170
SaqAI	TTAA	7 cut(s)	648, 789, 969, 1092, 1112, 1272, 1917
SatI	GCNGC	4 cut(s)	35, 735, 997, 1098
Sau3AI	GATC	7 cut(s)	268, 886, 1003, 1352, 1570, 1798, 1845
Sau96I	GGNCC	8 cut(s)	4, 68, 1178, 1256, 1595, 1615, 1622, 1623
SchI	GAGTC	6 cut(s)	49, 185, 596, 953, 1367, 1895
ScrFI	CCNGG	2 cut(s)	560, 1780
SduI	GDGCHC	2 cut(s)	1295, 1626
SfaNI	GCATC	4 cut(s)	271, 370, 964, 1657
SinI	GGWCC	3 cut(s)	1178, 1595, 1615
SmiMI	CAYNNNNRTG	2 cut(s)	524, 957
SmlI	CTYRAG	3 cut(s)	788, 1288, 1709
SmoI	CTYRAG	3 cut(s)	788, 1288, 1709
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	9 cut(s)	11, 17, 154, 640, 725, 1123, 1191, 1580, 1694
SsiI	CCGC	5 cut(s)	58, 71, 253, 734, 1743
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	77, 278, 738
StyD4I	CCNGG	2 cut(s)	558, 1778
StyI	CCWWGG	2 cut(s)	1611, 1618
TaaI	ACNGT	5 cut(s)	338, 523, 1203, 1459, 1842
TaiI	ACGT	3 cut(s)	375, 895, 1915
TaqI	TCGA	1 cut(s)	860
TasI	AATT	9 cut(s)	11, 17, 154, 640, 725, 1123, 1191, 1580, 1694
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	5 cut(s)	49, 295, 1643, 1809, 1853
Tru1I	TTAA	7 cut(s)	648, 789, 969, 1092, 1112, 1272, 1917
Tru9I	TTAA	7 cut(s)	648, 789, 969, 1092, 1112, 1272, 1917
TscAI	CASTG	5 cut(s)	131, 268, 1524, 1557, 1597
TseFI	GTSAC	2 cut(s)	188, 1604
TseI	GCWGC	3 cut(s)	34, 996, 1097
Tsp45I	GTSAC	2 cut(s)	188, 1604
TspDTI	ATGAA	7 cut(s)	856, 1152, 1212, 1280, 1635, 1842, 1894
TspGWI	ACGGA	2 cut(s)	213, 1276
TspRI	CASTG	5 cut(s)	131, 268, 1524, 1557, 1597
Van91I	CCANNNNNTGG	1 cut(s)	1348
Vha464I	CTTAAG	1 cut(s)	788
VpaK11BI	GGWCC	3 cut(s)	1178, 1595, 1615
XagI	CCTNNNNNAGG	1 cut(s)	661
XapI	RAATTY	1 cut(s)	1191
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	43
XmnI	GAANNNNTTC	2 cut(s)	314, 327
XspI	CTAG	3 cut(s)	77, 278, 738
Zsp2I	ATGCAT	2 cut(s)	964, 1652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.