Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326735.1

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 947

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

tccgacaaagaacggaagcgcgagtgtccgttttgcatgctggagaggcgaatagtccgctccttgagtgtggatctcagtctagatgcgccggcgaagattcggagctgtctgaatattttcgccgaacactttcgccacggtcgtcaggaagacgctcatgaattcctgcgttacgttattgatgcttgccacaacacgtgccttcgcctgaagaagctccggcgcaacatcaccagcaatggccacgccaatggaaacggtctagccaacggcaaagccaatgggacggctccggggtcgtccacggtggtgatggagattttcgggggagctttgcagagccaggtgaagtgtctatcctgtggcacagagtccaataaggttgatgagataatggatattagtcttgatgttttgcatagtaattcgcttaaagacgccttgcaaaggttcttccagtctgagcttttggatggccagaacaagtacaagtgtgaaagatgtaataaattggtggcggctaggaagcagatgtcgatacttcaagcacctaatgttcttgtaatccaacttaagagatttgagggtctattgggtgggaagattgataaatccattgcatttgaagagtttttggtgctgtcgagcttcatgtgcaaaacaagtcaggtatgcttaatttgttttttctttggtctcaaggtatgtttaagttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

240

Amino Acids

26.86

Weight (kDa)

8.93

Isoelectric Point (pI)

61.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	58, 521
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	2 cut(s)	244, 478
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	233
AcvI	CACGTG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	450
AflII	CTTAAG	1 cut(s)	575
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	548, 629
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	5 cut(s)	108, 220, 335, 469, 651
AluI	AGCT	5 cut(s)	108, 220, 335, 469, 651
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	244, 478
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	2 cut(s)	119, 132
AspLEI	GCGC	3 cut(s)	21, 91, 228
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	226, 325, 361
BalI	TGGCCA	2 cut(s)	246, 480
BbrPI	CACGTG	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	159
BccI	CCATC	2 cut(s)	310, 470
BceAI	ACGGC	2 cut(s)	289, 306
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	3 cut(s)	83, 266, 525
BfrI	CTTAAG	1 cut(s)	575
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	2 cut(s)	297, 347
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	297, 347
BmsI	GCATC	2 cut(s)	76, 175
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	85, 686
BpuMI	CCSGG	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	3 cut(s)	139, 296, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	2 cut(s)	247, 618
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	139, 296, 306
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMI	GCAATG	2 cut(s)	247, 618
BseMII	CTCAG	2 cut(s)	91, 456
BseNI	ACTGG	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	246, 480
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	92, 223, 296
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	246, 480
Bso31I	GGTCTC	1 cut(s)	704
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	2 cut(s)	58, 521
BspANI	GGCC	2 cut(s)	246, 480
BspCNI	CTCAG	2 cut(s)	90, 457
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	247, 618
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	139, 296, 306
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	143, 263, 310
Bst6I	CTCTTC	1 cut(s)	624
BstACI	GRCGYC	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	38, 93, 190
BstDEI	CTNAG	2 cut(s)	77, 465
BstDSI	CCRYGG	2 cut(s)	139, 306
BstENI	CCTNNNNNAGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	3 cut(s)	21, 91, 228
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 657
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	295, 345
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	246, 480
BtgI	CCRYGG	2 cut(s)	139, 306
BtsCI	GGATG	1 cut(s)	481
Cac8I	GCNNGC	3 cut(s)	38, 93, 190
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	3 cut(s)	21, 91, 228
Cfr10I	RCCGGY	1 cut(s)	91
CseI	GACGC	2 cut(s)	164, 449
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	3 cut(s)	37, 161, 655
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	2 cut(s)	77, 465
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	2 cut(s)	244, 478
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	233
Eco72I	CACGTG	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	345
FaeI	CATG	3 cut(s)	40, 164, 658
FaiI	YATR	6 cut(s)	38, 162, 423, 656, 676, 709
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	36, 160, 654
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	3 cut(s)	83, 266, 525
GlaI	GCGC	3 cut(s)	20, 90, 227
GluI	GCNGC	1 cut(s)	522
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	246, 480
HapII	CCGG	3 cut(s)	92, 223, 296
HgaI	GACGC	2 cut(s)	164, 449
HhaI	GCGC	3 cut(s)	21, 91, 228
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	3 cut(s)	40, 164, 658
Hin6I	GCGC	3 cut(s)	19, 89, 226
HinP1I	GCGC	3 cut(s)	19, 89, 226
HinfI	GANTC	2 cut(s)	100, 374
HpaII	CCGG	3 cut(s)	92, 223, 296
HphI	GGTGA	3 cut(s)	226, 325, 361
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	4 cut(s)	4, 105, 114, 466
Hpy188III	TCNNGA	4 cut(s)	83, 149, 161, 410
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	3 cut(s)	143, 263, 310
HpyCH4IV	ACGT	2 cut(s)	177, 200
HpyCH4V	TGCA	6 cut(s)	36, 340, 421, 448, 623, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 657
HpyF3I	CTNAG	2 cut(s)	77, 465
HpySE526I	ACGT	2 cut(s)	177, 200
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	3 cut(s)	40, 164, 658
HspAI	GCGC	3 cut(s)	19, 89, 226
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	5 cut(s)	65, 105, 225, 298, 332
LweI	GCATC	2 cut(s)	76, 175
MaeI	CTAG	3 cut(s)	83, 266, 525
MaeII	ACGT	2 cut(s)	177, 200
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	75
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	73
MboII	GAAGA	6 cut(s)	109, 164, 226, 448, 616, 641
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	2 cut(s)	246, 480
MluCI	AATT	4 cut(s)	164, 427, 512, 681
MluNI	TGGCCA	2 cut(s)	246, 480
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	27, 595
MnlI	CCTC	2 cut(s)	39, 580
Mox20I	TGGCCA	2 cut(s)	246, 480
MreI	CGCCGGCG	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	2 cut(s)	119, 132
MscI	TGGCCA	2 cut(s)	246, 480
MseI	TTAA	4 cut(s)	435, 576, 680, 713
MslI	CAYNNNNRTG	2 cut(s)	252, 311
Msp20I	TGGCCA	2 cut(s)	246, 480
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	3 cut(s)	92, 223, 296
MspR9I	CCNGG	2 cut(s)	297, 347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	46, 657
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	40, 164, 658
NlaIV	GGNNCC	1 cut(s)	294
NspI	RCATGY	1 cut(s)	40
OliI	CACNNNNGTG	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	40
PagI	TCATGA	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	2 cut(s)	119, 132
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	382
PmaCI	CACGTG	1 cut(s)	201
PmlI	CACGTG	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	382
Ppu21I	YACGTR	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	345
PspCI	CACGTG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	2 cut(s)	252, 311
SaqAI	TTAA	4 cut(s)	435, 576, 680, 713
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	297, 347
SfaNI	GCATC	2 cut(s)	76, 175
SgrAI	CRCCGGYG	1 cut(s)	91
SmiMI	CAYNNNNRTG	2 cut(s)	252, 311
SmlI	CTYRAG	3 cut(s)	64, 575, 701
SmoI	CTYRAG	3 cut(s)	64, 575, 701
SphI	GCATGC	1 cut(s)	40
Sse9I	AATT	4 cut(s)	164, 427, 512, 681
SsiI	CCGC	2 cut(s)	58, 521
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	3 cut(s)	83, 266, 525
StyD4I	CCNGG	2 cut(s)	295, 345
TaaI	ACNGT	3 cut(s)	143, 263, 310
TaiI	ACGT	2 cut(s)	180, 203
TaqI	TCGA	2 cut(s)	539, 647
TasI	AATT	4 cut(s)	164, 427, 512, 681
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	4 cut(s)	435, 576, 680, 713
Tru9I	TTAA	4 cut(s)	435, 576, 680, 713
TspDTI	ATGAA	2 cut(s)	177, 643
TspGWI	ACGGA	2 cut(s)	18, 28
Vha464I	CTTAAG	1 cut(s)	575
XagI	CCTNNNNNAGG	1 cut(s)	448
XapI	RAATTY	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	2 cut(s)	119, 132
XspI	CTAG	3 cut(s)	83, 266, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.