Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Forward (+)

8756704 .. 8801647

Gene Structure 44944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0099400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCGAGTTCCCGGTTGTACATGCGCATCCTCCTTGGAGTTATCATTTGTCTGGGACAAATTCATATTTCACCTTTGAAGGCATTTGCACAGACTTGGTGTGTAGCCAATCCATCATTAGGTTATGATACTTCGGAAAACGTGGAAAGCTATGCATGCAATTACGTGGATTGCTCTTCAATTCACAGTGGAGATCCATGCTCTGTCCCCTCGAACTTGTTTAGTCGTGCATCCTTTGCCATGGATGCTTACTACCAACAGGGACATGATTGCACATTTGGTGGCTCTGGACTCAAATCTATTACTGATCCAAGCTACGGAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTGCCCCTTATAGTTTACTGCAAATGAACATTGACTTCGCTTGTAGTCAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCAGAACAGATTTGAGCTGTCATTTCAAGTCGACCGGCATGATTGTGATTGACGATCCAAGTTTTGGAACTTGTTTGTACAAAAGAAAAGGGAAGGAAGGAGGTGCTGGTGTGAGTCTCGTAAAAAAGCATGGGAAATCTAGTGTCATTTTAAAACTGATAGTTGCGTCGATAATTACTTTTGGGTTGGTAGGGACTGTAACTGTTGTGTGCGTGTGCCGGCGTTCTCGGAATCCCTCACAAGCAATAAAAAGTGAGATGCAACACATGCCAACCCCAGCCCCCTCTCAGTCCCATCCACAGCCATCATGTTCAGTGACAGTATCAGTTCCCTGTGAGGCGGTATCAGTTCCTCTCAGTCCCCCTCCCGGTCCTTCTCAAACACAGCCCAAGAAAGACGACGGCCAACTTGACATTGTTATTTCAGGTAATCAAGTCAATGGAAACAAAGGAGACCATAATGGACAGTTCTCCGTTGGCAACACTATACACAAGACTGTCCATATCAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

353

Amino Acids

37.72

Weight (kDa)

7.83

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	32 - 97	2.1e-11	X8 domain
X8	PF07983	126 - 196	3.7e-18	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccI	GTMKAC	2 cut(s)	450, 578
AccII	CGCG	1 cut(s)	512
AciI	CCGC	1 cut(s)	887
AclWI	GGATC	3 cut(s)	188, 302, 596
AcoI	YGGCCR	1 cut(s)	949
AcsI	RAATTY	2 cut(s)	60, 329
AfaI	GTAC	2 cut(s)	20, 626
AfiI	CCNNNNNNNGG	4 cut(s)	119, 317, 611, 914
AflIII	ACRYGT	1 cut(s)	510
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	79, 180, 467, 574
AluBI	AGCT	4 cut(s)	150, 315, 368, 564
AluI	AGCT	4 cut(s)	150, 315, 368, 564
Alw26I	GTCTC	2 cut(s)	668, 993
AlwI	GGATC	3 cut(s)	188, 302, 596
AoxI	GGCC	1 cut(s)	949
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	2 cut(s)	60, 329
AsiGI	ACCGGT	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	917
AsuC2I	CCSGG	2 cut(s)	13, 915
AsuHPI	GGTGA	2 cut(s)	63, 488
AvaII	GGWCC	1 cut(s)	917
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	3 cut(s)	121, 849, 859
BceAI	ACGGC	1 cut(s)	964
BcnI	CCSGG	2 cut(s)	13, 915
BcoDI	GTCTC	2 cut(s)	668, 993
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	454
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	13, 915
Bme18I	GGWCC	1 cut(s)	917
BmgT120I	GGNCC	1 cut(s)	917
BmrFI	CCNGG	2 cut(s)	13, 915
BmsI	GCATC	4 cut(s)	36, 235, 239, 795
BpmI	CTGGAG	1 cut(s)	345
BpuMI	CCSGG	2 cut(s)	13, 915
BsaAI	YACGTR	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	993
BsaJI	CCNNGG	2 cut(s)	34, 240
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 317, 611, 914
Bse118I	RCCGGY	3 cut(s)	470, 581, 765
BseDI	CCNNGG	2 cut(s)	34, 240
BseGI	GGATG	4 cut(s)	27, 230, 250, 841
BseLI	CCNNNNNNNGG	4 cut(s)	119, 317, 611, 914
BseMII	CTCAG	3 cut(s)	362, 848, 916
BseXI	GCAGC	1 cut(s)	377
BseYI	CCCAGC	1 cut(s)	823
Bsh1236I	CGCG	1 cut(s)	512
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	951
BshTI	ACCGGT	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	582
BsiSI	CCGG	5 cut(s)	13, 471, 582, 766, 915
BslFI	GGGAC	6 cut(s)	69, 191, 276, 754, 823, 891
BslI	CCNNNNNNNGG	4 cut(s)	119, 317, 611, 914
BsmAI	GTCTC	2 cut(s)	668, 993
BsmFI	GGGAC	6 cut(s)	69, 191, 276, 754, 823, 891
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	951
Bso31I	GGTCTC	1 cut(s)	993
Bsp1407I	TGTACA	2 cut(s)	18, 624
Bsp143I	GATC	3 cut(s)	193, 307, 601
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	1 cut(s)	887
BspANI	GGCC	1 cut(s)	951
BspCNI	CTCAG	3 cut(s)	363, 847, 915
BspFNI	CGCG	1 cut(s)	512
BspPI	GGATC	3 cut(s)	188, 302, 596
BspQI	GCTCTTC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	993
BsrFI	RCCGGY	3 cut(s)	470, 581, 765
BsrGI	TGTACA	2 cut(s)	18, 624
BssAI	RCCGGY	3 cut(s)	470, 581, 765
BssECI	CCNNGG	2 cut(s)	34, 240
BssMI	GATC	3 cut(s)	193, 307, 601
BssT1I	CCWWGG	2 cut(s)	34, 240
Bst4CI	ACNGT	7 cut(s)	188, 455, 745, 751, 868, 1014, 1045
Bst6I	CTCTTC	1 cut(s)	181
BstAPI	GCANNNNNTGC	2 cut(s)	236, 814
BstAUI	TGTACA	2 cut(s)	18, 624
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	157, 767
BstDEI	CTNAG	3 cut(s)	371, 834, 902
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	4 cut(s)	27, 230, 250, 841
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	196, 310, 604
BstMAI	GTCTC	2 cut(s)	668, 993
BstMBI	GATC	3 cut(s)	193, 307, 601
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 236, 245, 365, 518, 814
BstNSI	RCATGY	3 cut(s)	25, 159, 817
BstSCI	CCNGG	2 cut(s)	11, 913
BstSFI	CTRYAG	1 cut(s)	454
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	951
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	4 cut(s)	27, 230, 250, 841
BtsIMutI	CAGTG	2 cut(s)	193, 867
Cac8I	GCNNGC	2 cut(s)	157, 767
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	3 cut(s)	470, 581, 765
Cfr13I	GGNCC	1 cut(s)	917
CseI	GACGC	2 cut(s)	501, 702
Csp6I	GTAC	2 cut(s)	19, 625
CspAI	ACCGGT	1 cut(s)	470
CviQI	GTAC	2 cut(s)	19, 625
DdeI	CTNAG	3 cut(s)	371, 834, 902
DpnI	GATC	3 cut(s)	195, 309, 603
DpnII	GATC	3 cut(s)	193, 307, 601
DraI	TTTAAA	1 cut(s)	699
EaeI	YGGCCR	1 cut(s)	949
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco130I	CCWWGG	2 cut(s)	34, 240
Eco31I	GGTCTC	1 cut(s)	993
Eco47I	GGWCC	1 cut(s)	917
EcoT14I	CCWWGG	2 cut(s)	34, 240
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	34, 240
FaqI	GGGAC	6 cut(s)	69, 191, 276, 754, 823, 891
FblI	GTMKAC	2 cut(s)	450, 578
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	4 cut(s)	14, 217, 257, 828
Fsp4HI	GCNGC	1 cut(s)	366
FspAI	RTGCGCAY	1 cut(s)	26
FspBI	CTAG	1 cut(s)	687
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	366
GsaI	CCCAGC	1 cut(s)	827
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	951
HapII	CCGG	5 cut(s)	13, 471, 582, 766, 915
HgaI	GACGC	2 cut(s)	501, 702
HhaI	GCGC	1 cut(s)	27
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	2 cut(s)	451, 579
HindII	GTYRAC	2 cut(s)	451, 579
HinfI	GANTC	4 cut(s)	291, 526, 661, 778
HpaII	CCGG	5 cut(s)	13, 471, 582, 766, 915
HphI	GGTGA	2 cut(s)	63, 488
Hpy166II	GTNNAC	3 cut(s)	413, 451, 579
Hpy188I	TCNGA	4 cut(s)	136, 343, 372, 777
Hpy188III	TCNNGA	1 cut(s)	288
Hpy8I	GTNNAC	3 cut(s)	413, 451, 579
Hpy99I	CGWCG	2 cut(s)	718, 950
HpyAV	CCTTC	4 cut(s)	73, 634, 638, 930
HpyCH4III	ACNGT	7 cut(s)	188, 455, 745, 751, 868, 1014, 1045
HpyCH4IV	ACGT	2 cut(s)	141, 165
HpyCH4V	TGCA	9 cut(s)	89, 155, 159, 230, 273, 327, 389, 418, 808
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 236, 245, 365, 518, 814
HpyF3I	CTNAG	3 cut(s)	371, 834, 902
HpySE526I	ACGT	2 cut(s)	141, 165
HspAI	GCGC	1 cut(s)	25
KroI	GCCGGC	1 cut(s)	765
KroNI	GCCGGC	1 cut(s)	767
Kzo9I	GATC	3 cut(s)	193, 307, 601
LguI	GCTCTTC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	4 cut(s)	36, 235, 239, 795
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	2 cut(s)	141, 165
MaeIII	GTNAC	2 cut(s)	745, 862
MalI	GATC	3 cut(s)	195, 309, 603
MboI	GATC	3 cut(s)	193, 307, 601
MboII	GAAGA	2 cut(s)	168, 356
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	7 cut(s)	60, 160, 180, 329, 462, 485, 720
MluI	ACGCGT	1 cut(s)	510
MlyI	GAGTC	2 cut(s)	285, 670
MnlI	CCTC	8 cut(s)	41, 220, 641, 793, 841, 877, 909, 921
Mph1103I	ATGCAT	1 cut(s)	157
MroNI	GCCGGC	1 cut(s)	765
MseI	TTAA	1 cut(s)	698
MslI	CAYNNNNRTG	2 cut(s)	500, 590
MspI	CCGG	5 cut(s)	13, 471, 582, 766, 915
MspR9I	CCNGG	2 cut(s)	13, 915
Mva1269I	GAATGC	1 cut(s)	485
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	6 cut(s)	156, 236, 245, 365, 518, 814
NaeI	GCCGGC	1 cut(s)	767
NciI	CCSGG	2 cut(s)	13, 915
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	193, 307, 601
NgoMIV	GCCGGC	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	862
NsbI	TGCGCA	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	3 cut(s)	25, 159, 817
PaeI	GCATGC	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	767
PfeI	GAWTC	2 cut(s)	526, 778
PflMI	CCANNNNNTGG	1 cut(s)	611
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	2 cut(s)	285, 669
PpsI	GAGTC	2 cut(s)	285, 669
Ppu21I	YACGTR	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	823
PspPI	GGNCC	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	2 cut(s)	20, 626
RsaNI	GTAC	2 cut(s)	19, 625
RseI	CAYNNNNRTG	2 cut(s)	500, 590
SalI	GTCGAC	2 cut(s)	449, 577
SapI	GCTCTTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	3 cut(s)	193, 307, 601
Sau96I	GGNCC	1 cut(s)	917
SchI	GAGTC	2 cut(s)	285, 670
ScrFI	CCNGG	2 cut(s)	13, 915
SfaNI	GCATC	4 cut(s)	36, 235, 239, 795
SfcI	CTRYAG	1 cut(s)	454
SinI	GGWCC	1 cut(s)	917
SmiMI	CAYNNNNRTG	2 cut(s)	500, 590
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	7 cut(s)	60, 160, 180, 329, 462, 485, 720
SsiI	CCGC	1 cut(s)	887
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	11, 913
StyI	CCWWGG	2 cut(s)	34, 240
TaaI	ACNGT	7 cut(s)	188, 455, 745, 751, 868, 1014, 1045
TaiI	ACGT	2 cut(s)	144, 168
TaqI	TCGA	5 cut(s)	5, 212, 450, 578, 716
TasI	AATT	7 cut(s)	60, 160, 180, 329, 462, 485, 720
TatI	WGTACW	2 cut(s)	18, 624
TfiI	GAWTC	2 cut(s)	526, 778
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	2 cut(s)	193, 867
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	4 cut(s)	53, 437, 518, 539
TspGWI	ACGGA	2 cut(s)	333, 1009
TspRI	CASTG	2 cut(s)	193, 867
Van91I	CCANNNNNTGG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	917
XapI	RAATTY	2 cut(s)	60, 329
XceI	RCATGY	3 cut(s)	25, 159, 817
XmiI	GTMKAC	2 cut(s)	450, 578
XspI	CTAG	1 cut(s)	687
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.