Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Forward (+)

72771849 .. 72775265

Gene Structure 3417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATTACCAAGGGTGCTTTTCCTCTGGTGGCACCACTATCACCGGATTCCACACATGAAAAAGACTTCCAATTAGGCTACCCTCAAGGAAGGAATGGTGGCCTTGCTCGCACTACAATGGTCTTCCTGTTCAGATCAGGGAAATTGGATGCAACGGGTCGTTGGTATTGCTGCAACGATCAGTTTGTCTCGCTTTCAACTTTGCTAGATGTCTTATCTGAAAAGGTTTACATCCTTTTCTTCTCCCGTACCTACCAAAGGACCGTTAATGCGGCTTCAAATGGGGTAAAGTCACAAAATTGTAATGGTCATGAAGCTTCCAAAAAACCAAAGCCTGCTCTTCCACCAGAAGGACCACAAATAAAAATTTCTGAACAGTCTTCTTGGAAGGATATTTCTACTAAATCTCAGGCTGATAAAGTGCTGTCAGGCCCACGGACGAAGCTTAACATCAATGGAAACTTTAGCACCAAAAGAACTCCTGCAACTGATAATGGAAAAATTGCTTACAAGAACCAGTCTGTGGGATCAAATGGGGAGGTGAAGAACTTGGTTAGTTTGGACAAAACTAACAACAGCCAACAATTTTCTGCACCAATAGAAAATGGTAGTGTGGGTTCAGTGAAATCCGAACTCTCTGAAGGTACTGGTTCAGTGAAAACCGAACTCCCTGATCACTCTGAATTGCATGGCAGTGGTCTCCATGGCCACGCCGTGGTCCTTGGGCCCAAAAGGAAATCTCGGGGTTCATGCATTTTGTTTGAACATGATGCTCAATCTCTGGAAAAAGTTGAAGAATTGAAGGCATGTCTCAAGAAAGAAGCTCTCTCAGTTTTGCGCTCATGCGGTTGGGCAGATGAGGTTTTCAGTTTTATGCGTTCCCGGAAGAGGTTATGTGTAGATCAAGTTGGACTCACTCAGAATGGTGATGAAGCAAAAGTTGCATATGTGCCCATTTCCTATTATTCACCAACTGCAACTGAATTTCTTTCAGTGGCCAAGTTTTTACTTCTCGGAATACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

341

Amino Acids

37.14

Weight (kDa)

9.17

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccB7I	CCANNNNNTGG	2 cut(s)	523, 715
AciI	CCGC	2 cut(s)	272, 846
AclWI	GGATC	1 cut(s)	535
AcoI	YGGCCR	2 cut(s)	706, 996
AcsI	RAATTY	2 cut(s)	366, 983
AcuI	CTGAAG	1 cut(s)	660
AdeI	CACNNNGTG	1 cut(s)	715
AfaI	GTAC	2 cut(s)	250, 646
AfiI	CCNNNNNNNGG	5 cut(s)	258, 350, 523, 715, 888
AgsI	TTSAA	5 cut(s)	198, 279, 764, 794, 802
AluBI	AGCT	3 cut(s)	317, 445, 824
AluI	AGCT	3 cut(s)	317, 445, 824
Alw26I	GTCTC	3 cut(s)	193, 704, 815
AlwI	GGATC	1 cut(s)	535
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	5 cut(s)	100, 430, 706, 725, 996
ApaI	GGGCCC	1 cut(s)	729
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	366, 983
AspLEI	GCGC	1 cut(s)	840
AspS9I	GGNCC	6 cut(s)	261, 353, 431, 718, 725, 726
AsuC2I	CCSGG	1 cut(s)	883
AsuHPI	GGTGA	4 cut(s)	33, 553, 938, 960
AvaI	CYCGRG	1 cut(s)	741
AvaII	GGWCC	3 cut(s)	261, 353, 718
BaeGI	GKGCMC	2 cut(s)	729, 954
BalI	TGGCCA	2 cut(s)	708, 998
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	729
BbsI	GAAGAC	2 cut(s)	115, 372
BbvI	GCAGC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	698
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	883
BcoDI	GTCTC	3 cut(s)	193, 704, 815
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	172, 273
BlsI	GCNGC	2 cut(s)	173, 274
Bme1390I	CCNGG	1 cut(s)	883
Bme18I	GGWCC	3 cut(s)	261, 353, 718
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	6 cut(s)	261, 353, 431, 718, 725, 726
BmiI	GGNNCC	2 cut(s)	33, 727
BmrFI	CCNGG	1 cut(s)	883
BmsI	GCATC	2 cut(s)	139, 760
BpiI	GAAGAC	2 cut(s)	115, 372
BpuEI	CTTGAG	2 cut(s)	69, 797
BpuMI	CCSGG	1 cut(s)	883
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	5 cut(s)	9, 434, 703, 714, 721
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	5 cut(s)	258, 350, 523, 715, 888
Bse1I	ACTGG	2 cut(s)	517, 652
BseDI	CCNNGG	5 cut(s)	9, 434, 703, 714, 721
BseGI	GGATG	2 cut(s)	154, 231
BseLI	CCNNNNNNNGG	5 cut(s)	258, 350, 523, 715, 888
BseMII	CTCAG	3 cut(s)	422, 843, 932
BseNI	ACTGG	2 cut(s)	517, 652
BseSI	GKGCMC	2 cut(s)	729, 954
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	5 cut(s)	102, 432, 708, 727, 998
BshNI	GGYRCC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	2 cut(s)	44, 883
BslI	CCNNNNNNNGG	5 cut(s)	258, 350, 523, 715, 888
BsmAI	GTCTC	3 cut(s)	193, 704, 815
BsnI	GGCC	5 cut(s)	102, 432, 708, 727, 998
Bso31I	GGTCTC	1 cut(s)	704
BsoBI	CYCGRG	1 cut(s)	741
Bsp120I	GGGCCC	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	729, 954
Bsp143I	GATC	5 cut(s)	134, 178, 527, 673, 901
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	2 cut(s)	272, 846
BspANI	GGCC	5 cut(s)	102, 432, 708, 727, 998
BspCNI	CTCAG	3 cut(s)	421, 842, 931
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	33, 727
BspPI	GGATC	1 cut(s)	535
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	517, 652
BssECI	CCNNGG	5 cut(s)	9, 434, 703, 714, 721
BssMI	GATC	5 cut(s)	134, 178, 527, 673, 901
BssT1I	CCWWGG	3 cut(s)	9, 703, 721
Bst4CI	ACNGT	2 cut(s)	265, 378
Bst6I	CTCTTC	2 cut(s)	345, 881
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstC8I	GCNNGC	2 cut(s)	109, 336
BstDEI	CTNAG	3 cut(s)	408, 829, 918
BstDSI	CCRYGG	3 cut(s)	434, 703, 714
BstENI	CCTNNNNNAGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	154, 231
BstHHI	GCGC	1 cut(s)	840
BstKTI	GATC	5 cut(s)	137, 181, 530, 676, 904
BstMAI	GTCTC	3 cut(s)	193, 704, 815
BstMBI	GATC	5 cut(s)	134, 178, 527, 673, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 941
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	881
BstSLI	GKGCMC	2 cut(s)	729, 954
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	2 cut(s)	115, 372
BsuRI	GGCC	5 cut(s)	102, 432, 708, 727, 998
BtgI	CCRYGG	3 cut(s)	434, 703, 714
BtsCI	GGATG	2 cut(s)	154, 231
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	4 cut(s)	627, 660, 700, 999
Cac8I	GCNNGC	2 cut(s)	109, 336
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	840
Cfr13I	GGNCC	6 cut(s)	261, 353, 431, 718, 725, 726
Csp6I	GTAC	2 cut(s)	249, 645
CviAII	CATG	8 cut(s)	56, 311, 689, 704, 750, 767, 807, 843
CviQI	GTAC	2 cut(s)	249, 645
DdeI	CTNAG	3 cut(s)	408, 829, 918
DpnI	GATC	5 cut(s)	136, 180, 529, 675, 903
DpnII	GATC	5 cut(s)	134, 178, 527, 673, 901
DraIII	CACNNNGTG	1 cut(s)	715
EaeI	YGGCCR	2 cut(s)	706, 996
Eam1104I	CTCTTC	2 cut(s)	345, 881
EarI	CTCTTC	2 cut(s)	345, 881
Eco130I	CCWWGG	3 cut(s)	9, 703, 721
Eco24I	GRGCYC	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	3 cut(s)	261, 353, 718
Eco57I	CTGAAG	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	741
EcoNI	CCTNNNNNAGG	1 cut(s)	256
EcoT14I	CCWWGG	3 cut(s)	9, 703, 721
EcoT22I	ATGCAT	1 cut(s)	755
EcoT38I	GRGCYC	1 cut(s)	729
ErhI	CCWWGG	3 cut(s)	9, 703, 721
FaeI	CATG	8 cut(s)	59, 314, 692, 707, 753, 770, 810, 846
FatI	CATG	8 cut(s)	55, 310, 688, 703, 749, 766, 806, 842
FauNDI	CATATG	1 cut(s)	946
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	172, 273
FokI	GGATG	2 cut(s)	161, 218
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	2 cut(s)	172, 273
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	839
GluI	GCNGC	2 cut(s)	172, 273
HaeIII	GGCC	5 cut(s)	102, 432, 708, 727, 998
HapII	CCGG	2 cut(s)	44, 883
HhaI	GCGC	1 cut(s)	840
Hin1II	CATG	8 cut(s)	59, 314, 692, 707, 753, 770, 810, 846
Hin6I	GCGC	1 cut(s)	838
HinP1I	GCGC	1 cut(s)	838
HindIII	AAGCTT	2 cut(s)	315, 443
HinfI	GANTC	2 cut(s)	47, 912
HpaII	CCGG	2 cut(s)	44, 883
HphI	GGTGA	4 cut(s)	33, 553, 938, 960
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	8 cut(s)	134, 220, 373, 631, 640, 682, 921, 1016
Hpy188III	TCNNGA	3 cut(s)	311, 782, 814
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	5 cut(s)	84, 344, 382, 635, 796
HpyCH4III	ACNGT	2 cut(s)	265, 378
HpyCH4V	TGCA	8 cut(s)	152, 174, 485, 593, 688, 753, 944, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 941
HpyF3I	CTNAG	3 cut(s)	408, 829, 918
Hsp92II	CATG	8 cut(s)	59, 314, 692, 707, 753, 770, 810, 846
HspAI	GCGC	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	5 cut(s)	134, 178, 527, 673, 901
LguI	GCTCTTC	1 cut(s)	345
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	2 cut(s)	139, 760
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	5 cut(s)	136, 180, 529, 675, 903
MboI	GATC	5 cut(s)	134, 178, 527, 673, 901
MboII	GAAGA	7 cut(s)	115, 232, 332, 372, 556, 806, 898
MhlI	GDGCHC	2 cut(s)	729, 954
MlsI	TGGCCA	2 cut(s)	708, 998
MluCI	AATT	9 cut(s)	71, 143, 298, 366, 501, 584, 683, 797, 983
MluNI	TGGCCA	2 cut(s)	708, 998
MlyI	GAGTC	1 cut(s)	906
MmeI	TCCRAC	1 cut(s)	889
MnlI	CCTC	5 cut(s)	33, 93, 532, 853, 882
Mox20I	TGGCCA	2 cut(s)	708, 998
Mph1103I	ATGCAT	1 cut(s)	755
MscI	TGGCCA	2 cut(s)	708, 998
MseI	TTAA	2 cut(s)	267, 447
MslI	CAYNNNNRTG	2 cut(s)	116, 693
Msp20I	TGGCCA	2 cut(s)	708, 998
MspI	CCGG	2 cut(s)	44, 883
MspR9I	CCNGG	1 cut(s)	883
MwoI	GCNNNNNNNGC	2 cut(s)	108, 941
NciI	CCSGG	1 cut(s)	883
NcoI	CCATGG	1 cut(s)	703
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	5 cut(s)	134, 178, 527, 673, 901
NlaIII	CATG	8 cut(s)	59, 314, 692, 707, 753, 770, 810, 846
NlaIV	GGNNCC	2 cut(s)	33, 727
NmuCI	GTSAC	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	755
NspI	RCATGY	1 cut(s)	810
PagI	TCATGA	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	2 cut(s)	523, 715
PfoI	TCCNGGA	1 cut(s)	881
PkrI	GCNGC	2 cut(s)	173, 274
PleI	GAGTC	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	906
PspN4I	GGNNCC	2 cut(s)	33, 727
PspOMI	GGGCCC	1 cut(s)	725
PspPI	GGNCC	6 cut(s)	261, 353, 431, 718, 725, 726
PsrI	GAACNNNNNNTAC	2 cut(s)	601, 633
RsaI	GTAC	2 cut(s)	250, 646
RsaNI	GTAC	2 cut(s)	249, 645
RseI	CAYNNNNRTG	2 cut(s)	116, 693
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	267, 447
SatI	GCNGC	2 cut(s)	172, 273
Sau3AI	GATC	5 cut(s)	134, 178, 527, 673, 901
Sau96I	GGNCC	6 cut(s)	261, 353, 431, 718, 725, 726
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	1 cut(s)	883
SduI	GDGCHC	2 cut(s)	729, 954
SfaNI	GCATC	2 cut(s)	139, 760
SinI	GGWCC	3 cut(s)	261, 353, 718
SmiMI	CAYNNNNRTG	2 cut(s)	116, 693
SmlI	CTYRAG	2 cut(s)	84, 812
SmoI	CTYRAG	2 cut(s)	84, 812
Sse9I	AATT	9 cut(s)	71, 143, 298, 366, 501, 584, 683, 797, 983
SsiI	CCGC	2 cut(s)	272, 846
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	881
StyI	CCWWGG	3 cut(s)	9, 703, 721
TaaI	ACNGT	2 cut(s)	265, 378
TasI	AATT	9 cut(s)	71, 143, 298, 366, 501, 584, 683, 797, 983
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	267, 447
Tru9I	TTAA	2 cut(s)	267, 447
TscAI	CASTG	4 cut(s)	627, 660, 700, 999
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	4 cut(s)	72, 327, 738, 945
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	4 cut(s)	627, 660, 700, 999
Van91I	CCANNNNNTGG	2 cut(s)	523, 715
VpaK11BI	GGWCC	3 cut(s)	261, 353, 718
XagI	CCTNNNNNAGG	1 cut(s)	256
XapI	RAATTY	2 cut(s)	366, 983
XceI	RCATGY	1 cut(s)	810
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.