Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Forward (+)

8814529 .. 8816471

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0099600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTAAAGCGGAAAGTTCTTTCTGCATGCTCATCCTTTTCCTTCTGCAGGTTCTGTTTTTCCCCAAAGGACAAATGGAAACTAGCAGAGCGGCGTATGTGAAGACGTGGTGCATTGCAAAGCCTTCAACGAGTAAAGAAGCACTGGAGAACAATCTACAATATGCCTGCAATAACATAAATGCAATGGATTGCAAGGCAATTCAAGAAGGAGGTCCCTGCTCCAAACCTAATGATCTTTTGCTTTATGCTTCATTTGCCATGAATGCTTACTACCAGGCCAAGGGGAGGCACTACTGGAACTGTGACTTCAGCAACTCTGGTCTCATTTCCTTGACAGATCCAAGTTATGGTAATTGCACATATGAAGGGGGAGAGACAGCGGTGGATGACTCAAATTCGGGCAAGTGGTGTGTAGCAAGCCCTTCAGCAAGTGATGATCAGCTACATGCATGCATTGAGTTTGCTTGTGGCAAAGTAGATTGTAGCATTATAAGGTCTGGTGGTGCCTGTTTCGAGCCAAACACCGTCAAGAACCGCGCCTCAGTTGCCATGAATCTTTACTATCACCAAACAGGTCAAGCGGATATGAGTTGTGATTTTAATGGCAGTGGTAACATTGTCAGAACCGATCCAAGTTATGGTGATTGCAAACTGAAGAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

222

Amino Acids

24.16

Weight (kDa)

5.36

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	36 - 108	2.6e-18	X8 domain
X8	PF07983	136 - 205	2.4e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	506
AccB7I	CCANNNNNTGG	2 cut(s)	350, 641
AccBSI	CCGCTC	1 cut(s)	92
AccII	CGCG	1 cut(s)	540
AciI	CCGC	5 cut(s)	11, 92, 383, 538, 584
AclWI	GGATC	2 cut(s)	335, 626
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	2 cut(s)	295, 411
AfiI	CCNNNNNNNGG	5 cut(s)	49, 283, 288, 350, 641
AgsI	TTSAA	2 cut(s)	129, 206
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	329, 371
AlwI	GGATC	2 cut(s)	335, 626
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	560, 656
AvaII	GGWCC	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	329, 371
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	217, 508
BmrFI	CCNGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 283, 288, 350, 641
Bse1I	ACTGG	2 cut(s)	150, 302
Bse3DI	GCAATG	2 cut(s)	114, 192
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	33, 394
BseLI	CCNNNNNNNGG	5 cut(s)	49, 283, 288, 350, 641
BseMI	GCAATG	2 cut(s)	114, 192
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	2 cut(s)	150, 302
Bsh1236I	CGCG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	5 cut(s)	49, 283, 288, 350, 641
BsmAI	GTCTC	2 cut(s)	329, 371
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	235, 340, 439, 631
BspACI	CCGC	5 cut(s)	11, 92, 383, 538, 584
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	557
BspFNI	CGCG	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	217, 508
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	335, 626
BspT107I	GGYRCC	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	114, 192
BsrI	ACTGG	2 cut(s)	150, 302
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	235, 340, 439, 631
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	305, 529
Bst6I	CTCTTC	1 cut(s)	653
BstC8I	GCNNGC	4 cut(s)	29, 169, 421, 454
BstDEI	CTNAG	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	33, 394
BstFNI	CGCG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	4 cut(s)	238, 343, 442, 634
BstMAI	GTCTC	2 cut(s)	329, 371
BstMBI	GATC	4 cut(s)	235, 340, 439, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 266, 548
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	3 cut(s)	31, 452, 456
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	540
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	33, 394
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	2 cut(s)	143, 616
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	4 cut(s)	29, 169, 421, 454
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	5 cut(s)	28, 262, 449, 453, 553
CviJI	RGCY	7 cut(s)	5, 124, 281, 423, 445, 520, 666
CviKI_1	RGCY	7 cut(s)	5, 124, 281, 423, 445, 520, 666
DdeI	CTNAG	1 cut(s)	544
DpnI	GATC	4 cut(s)	237, 342, 441, 633
DpnII	GATC	4 cut(s)	235, 340, 439, 631
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	2 cut(s)	295, 411
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	2 cut(s)	454, 458
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	31, 265, 452, 456, 556
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	5 cut(s)	27, 261, 448, 452, 552
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	2 cut(s)	20, 401
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	31, 265, 452, 456, 556
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HinfI	GANTC	2 cut(s)	392, 556
HphI	GGTGA	2 cut(s)	560, 656
Hpy188I	TCNGA	1 cut(s)	626
Hpy188III	TCNNGA	2 cut(s)	206, 532
HpyAV	CCTTC	5 cut(s)	53, 135, 203, 362, 435
HpyCH4III	ACNGT	2 cut(s)	305, 529
HpyCH4IV	ACGT	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 266, 548
HpyF3I	CTNAG	1 cut(s)	544
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	5 cut(s)	31, 265, 452, 456, 556
HspAI	GCGC	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	235, 340, 439, 631
LmnI	GCTCC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	305, 614
MalI	GATC	4 cut(s)	237, 342, 441, 633
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	4 cut(s)	235, 340, 439, 631
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	3 cut(s)	201, 355, 397
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	3 cut(s)	206, 282, 553
Mph1103I	ATGCAT	2 cut(s)	454, 458
MseI	TTAA	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	257, 266, 548
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	4 cut(s)	235, 340, 439, 631
NlaIII	CATG	5 cut(s)	31, 265, 452, 456, 556
NlaIV	GGNNCC	2 cut(s)	217, 508
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	2 cut(s)	454, 458
NspI	RCATGY	3 cut(s)	31, 452, 456
PaeI	GCATGC	2 cut(s)	31, 456
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	556
PflMI	CCANNNNNTGG	2 cut(s)	350, 641
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	217, 508
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	4 cut(s)	235, 340, 439, 631
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	7 cut(s)	54, 110, 217, 232, 447, 500, 580
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	215
SphI	GCATGC	2 cut(s)	31, 456
Sse9I	AATT	3 cut(s)	201, 355, 397
SsiI	CCGC	5 cut(s)	11, 92, 383, 538, 584
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	305, 529
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	516
TasI	AATT	3 cut(s)	201, 355, 397
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	150, 616
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	243, 278, 381, 569
TspRI	CASTG	2 cut(s)	150, 616
Van91I	CCANNNNNTGG	2 cut(s)	350, 641
VpaK11BI	GGWCC	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	3 cut(s)	31, 452, 456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	2 cut(s)	454, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.