Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Reverse (-)

21521806 .. 21522243

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG193400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTCGTTGGTATTGCTGCAACGATCAGTTTGTCTCGCTTTCAACTTTGCTAGATGTCTTATCTGAAAAGGTTTACATCCTTTTCTTCTCCCGTACCAACCAAAGGACCGTTAATGCAGCTTCAAATGGGGTAAAGTCACAAAATTGTAATGGTCATGAAGCTTCCAAAAAACCAAAGCCTGCTCTTCCACCAGAAGGACCACAAATAAAAATTTCTGAACAGTCTTCTTGGAAGGATATTTCTACTAAATCTCAGGCTGATAAAGTGCTGTCAGGCCCACGGATGAAGTTTAACATCAATGGAAACTTTAGCACCAAAAGAACTCCTGCAACTGATAATGGAAAAATTGCTTACAAGAACCAATCTGTGGGATCAAATGGGGAGGTGAAGAACTTGGTTAGTTTGGACAAAAGTGAGAAAGCAAGATGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

145

Amino Acids

16.0

Weight (kDa)

9.64

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	370
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	3 cut(s)	105, 197, 370
AgsI	TTSAA	2 cut(s)	45, 126
AluBI	AGCT	2 cut(s)	122, 164
AluI	AGCT	2 cut(s)	122, 164
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	382
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	18, 119
ApoI	RAATTY	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	108, 200, 278
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	2 cut(s)	108, 200
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	5, 131
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	2 cut(s)	19, 120
BlsI	GCNGC	2 cut(s)	20, 121
Bme18I	GGWCC	2 cut(s)	108, 200
BmgT120I	GGNCC	3 cut(s)	108, 200, 278
BpiI	GAAGAC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 197, 370
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	78, 291
BseLI	CCNNNNNNNGG	3 cut(s)	105, 197, 370
BseMII	CTCAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	5, 131
BshFI	GGCC	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	105, 197, 370
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	25, 374
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	157
BspPI	GGATC	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	25, 374
Bst4CI	ACNGT	2 cut(s)	112, 225
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	78, 291
BstKTI	GATC	2 cut(s)	28, 377
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	2 cut(s)	25, 374
BstV1I	GCAGC	2 cut(s)	5, 131
BstV2I	GAAGAC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	78, 291
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	108, 200, 278
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	5 cut(s)	122, 164, 181, 260, 279
CviKI_1	RGCY	5 cut(s)	122, 164, 181, 260, 279
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	27, 376
DpnII	GATC	2 cut(s)	25, 374
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	108, 200
FaeI	CATG	1 cut(s)	161
FaiI	YATR	1 cut(s)	159
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	19, 120
FokI	GGATG	2 cut(s)	65, 298
Fsp4HI	GCNGC	2 cut(s)	19, 120
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	2 cut(s)	19, 120
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	162
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	67, 220
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	191, 229
HpyCH4III	ACNGT	2 cut(s)	112, 225
HpyCH4V	TGCA	3 cut(s)	21, 119, 332
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	25, 374
LguI	GCTCTTC	1 cut(s)	192
LpnPI	CCDG	5 cut(s)	195, 207, 242, 261, 342
Lsp1109I	GCAGC	2 cut(s)	5, 131
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	2 cut(s)	27, 376
MboI	GATC	2 cut(s)	25, 374
MboII	GAAGA	4 cut(s)	79, 179, 219, 403
MluCI	AATT	3 cut(s)	145, 213, 348
MnlI	CCTC	1 cut(s)	379
MseI	TTAA	2 cut(s)	114, 294
NdeII	GATC	2 cut(s)	25, 374
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	138
PagI	TCATGA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	20, 121
PspPI	GGNCC	3 cut(s)	108, 200, 278
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	114, 294
SatI	GCNGC	2 cut(s)	19, 120
Sau3AI	GATC	2 cut(s)	25, 374
Sau96I	GGNCC	3 cut(s)	108, 200, 278
SetI	ASST	4 cut(s)	75, 124, 166, 390
SinI	GGWCC	2 cut(s)	108, 200
Sse9I	AATT	3 cut(s)	145, 213, 348
SspMI	CTAG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	112, 225
TasI	AATT	3 cut(s)	145, 213, 348
Tru1I	TTAA	2 cut(s)	114, 294
Tru9I	TTAA	2 cut(s)	114, 294
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	2 cut(s)	18, 119
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	174, 302
TspGWI	ACGGA	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	108, 200
XapI	RAATTY	1 cut(s)	213
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.