Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Reverse (-)

21464653 .. 21469485

Gene Structure 4833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG211900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGGGCCTGCAATTTCAATTGCAGATGAGTTGGCAGCCGAGTCTACTGAATCAGAAGCGGAAGACAGGCCCGCCTCTAGGGTTGAAGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTTCAGTGCCTCACCTACACCCCTCCTCTCGCCAATTTCTGCCTCCGAAACCAGCACTCCTCCCTCTGTGACTCTTCCGACAAGGAACGCAAGCGCGAGTGTCCGTTTTGCATGCTGGAGAGGCGAATAGTCCGCTCCCTCAGTGTGGATCTCAGTCTAGATGCGCCGGCGAAGATTCGGAGCTGTCTGAATATTTTCGCCGAACACTTTCGCCACGGTCGTCAGGAAGACGCTCATGAGTTCCTGCGTTACGTTATTGATGCTTGCCACAACACTTGCCTTCGCCTGAAGAAGCTCCGGCGCAACATCACCGGCAATTGTTTGTCCAACGGCAATGGCAATGGCCACGCCAACGGGAATGGTCAGGCCAACGGCAAAGCCAATGGGACCGCTCCGGCTTCGTCCACGGTGGTGATGGAGATATTCGGGGGAGCTTTGCAGAGCCAGGTGAAGTGTCTATCCTGTGGCACAGAGTCCAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAATTCGCTTAAAGACGCCTTGCAAAGGTTCTTCCAGTCTGAGCTTTTGGATGGCCAAAACAAGTACAAGTGCGAAAGATGTAACAAATTGGTGGCGGCTAGGAAGCAAATGTCTATACTTCAAGCACCTAATGTTCTTGTAATCCAACTTAAGAGATTTGAGGGTCTATTGGGTGGGAAGATTGATAAATCCATTGCATTTGAAGAGTTTTTGGTGCTGTCGAGCTTCATGTGCAAAACAAGTCAGGATCCACGTCCAGAATATAAGCTTTGTGGTACTATTGTGCATTCTGGTTTTTCACCCGAGTCTGGTCATTATTATGCATATATTAAGGATGCGATGGGTCGTTGGTATTGCTGCAACGATCAGTTTGTCTCTCTTTCAACTTTGCAAGAGGTCTTATCTGAAAAGGTTTACATCCTTTTCTTCTCCCGGACCAACCAAAGGTCGGTTAATGCTGCTTCAAATGGGTTAAGGTCTCAAAATTGTAATGGTCATGAAGCTTCCAAAAAACCGAAGCCTGCTCTTCCACCAAAAGGACCACAAATAAAAATTTCTGAACAGTCTTCTTGGAAGGATATTTCTACTAAATCTCAGGTTGATAAAGTGCCTTCAGGCCCACGGATGAAGTTTAACATCAATGGAAACTTGAGTACCAAAAGAACTCCCGCAACTGATAATGGAAACATTGCTTACAAGAACCAATCTGTGGGATCAAATGGGGAGGTGAAGGACTCGGTTAGTTTGGACAAAAGTGAGAAAGCCAAGATGACTTTGATAAATGGGGATGGTTTGAACGGGAATATAACATCTGATACTGTTGAAGCTAACAACACCCAACCATTTTCTTCACCAATAGAAAATGGTAGTGTGGGTTCAGTGAAATCCGAACTCTCTGAAGTTACTGCTTCAGTGAAAACCGAACTCCCTGATCACTCTGAATTGGATAGCAGTGGTCCCAATGGTCACTCCATGGTCCTTGGGCCCAAAAGGAAATCTCGGGGTTCATGCATTTTGTTTGAACATGATGCTCAATCTCTGGAAAAAGTTGAAGAATTGAAGGCTGGTCTCAAGAAAGAAGCTCTCTCAGTTTTGCGCTCATGCGGTTGGGCAGATGAGGTTTTCAGTTTTATGCGTTCCCGGAAGAGGTTATGTGTAGATCAAGTTGGACTCACTCAGAATGGTGATGAAGCAAAGAAACTGTTGATCAGGGATTCCAAATCAACTTTTATTTCAAAGATACCCGAGTCTTTGAAGGGGGGCTTCATCAAACGTATTAAATCATTTAGCCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

647

Amino Acids

71.45

Weight (kDa)

9.12

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	27 - 358	3e-55	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	27 - 339	2.9e-18	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1354
AccBSI	CCGCTC	2 cut(s)	255, 512
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	1 cut(s)	216
AciI	CCGC	7 cut(s)	58, 71, 253, 510, 740, 1314, 1749
AclWI	GGATC	4 cut(s)	276, 887, 900, 1366
AcoI	YGGCCR	2 cut(s)	463, 697
AcsI	RAATTY	1 cut(s)	1197
AcuI	CTGAAG	5 cut(s)	107, 428, 1242, 1539, 1563
AcyI	GRCGYC	1 cut(s)	660
AfaI	GTAC	3 cut(s)	710, 922, 1300
AfiI	CCNNNNNNNGG	9 cut(s)	77, 265, 669, 953, 1089, 1093, 1181, 1354, 1791
AflII	CTTAAG	1 cut(s)	794
AjiI	CACGTC	1 cut(s)	899
AjnI	CCWGG	1 cut(s)	564
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	9 cut(s)	303, 415, 554, 688, 870, 913, 1148, 1472, 1727
AluI	AGCT	9 cut(s)	303, 415, 554, 688, 870, 913, 1148, 1472, 1727
Alw26I	GTCTC	3 cut(s)	1024, 1128, 1718
AlwI	GGATC	4 cut(s)	276, 887, 900, 1366
Ama87I	CYCGRG	3 cut(s)	947, 1644, 1889
AoxI	GGCC	7 cut(s)	4, 67, 463, 486, 697, 1261, 1628
ApaI	GGGCCC	1 cut(s)	1632
ApeKI	GCWGC	3 cut(s)	34, 1002, 1103
ApoI	RAATTY	1 cut(s)	1197
Asp700I	GAANNNNTTC	2 cut(s)	314, 327
AspLEI	GCGC	4 cut(s)	216, 286, 423, 1743
AsuC2I	CCSGG	2 cut(s)	1078, 1786
AsuHPI	GGTGA	8 cut(s)	124, 421, 544, 580, 936, 1384, 1488, 1841
AvaI	CYCGRG	3 cut(s)	947, 1644, 1889
AvaII	GGWCC	5 cut(s)	507, 1080, 1184, 1601, 1621
BaeGI	GKGCMC	1 cut(s)	1632
BaeI	ACNNNNGTAYC	6 cut(s)	912, 945, 1282, 1315, 1877, 1910
BalI	TGGCCA	2 cut(s)	465, 699
BamHI	GGATCC	1 cut(s)	892
BanII	GRGCYC	1 cut(s)	1632
BbsI	GAAGAC	3 cut(s)	68, 354, 1203
BbvI	GCAGC	3 cut(s)	46, 989, 1090
BccI	CCATC	4 cut(s)	529, 689, 979, 1427
BceAI	ACGGC	2 cut(s)	466, 508
BciT130I	CCWGG	1 cut(s)	566
BclI	TGATCA	2 cut(s)	1576, 1851
BcnI	CCSGG	2 cut(s)	1078, 1786
BcoDI	GTCTC	3 cut(s)	1024, 1128, 1718
BfaI	CTAG	3 cut(s)	77, 278, 744
BfrI	CTTAAG	1 cut(s)	794
BisI	GCNGC	4 cut(s)	35, 741, 1003, 1104
BlsI	GCNGC	4 cut(s)	36, 742, 1004, 1105
Bme1390I	CCNGG	3 cut(s)	566, 1078, 1786
Bme18I	GGWCC	5 cut(s)	507, 1080, 1184, 1601, 1621
BmeT110I	CYCGRG	3 cut(s)	947, 1644, 1889
BmgBI	CACGTC	1 cut(s)	899
BmiI	GGNNCC	4 cut(s)	508, 894, 1603, 1630
BmrFI	CCNGG	3 cut(s)	566, 1078, 1786
BmsI	GCATC	4 cut(s)	271, 370, 970, 1663
BpiI	GAAGAC	3 cut(s)	68, 354, 1203
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	1315, 1700
BpuMI	CCSGG	2 cut(s)	1078, 1786
BsaHI	GRCGYC	1 cut(s)	660
BsaI	GGTCTC	2 cut(s)	1128, 1718
BsaJI	CCNNGG	6 cut(s)	91, 334, 525, 1265, 1617, 1624
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	9 cut(s)	77, 265, 669, 953, 1089, 1093, 1181, 1354, 1791
Bse118I	RCCGGY	2 cut(s)	286, 431
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	4 cut(s)	460, 466, 837, 1332
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	6 cut(s)	91, 334, 525, 1265, 1617, 1624
BseGI	GGATG	5 cut(s)	700, 985, 1062, 1275, 1438
BseLI	CCNNNNNNNGG	9 cut(s)	77, 265, 669, 953, 1089, 1093, 1181, 1354, 1791
BseMI	GCAATG	4 cut(s)	460, 466, 837, 1332
BseMII	CTCAG	6 cut(s)	274, 286, 675, 1253, 1746, 1835
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	2 cut(s)	135, 169
BseSI	GKGCMC	1 cut(s)	1632
BseXI	GCAGC	3 cut(s)	46, 989, 1090
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	7 cut(s)	6, 69, 465, 488, 699, 1263, 1630
BsiEI	CGRYCG	1 cut(s)	340
BsiHKCI	CYCGRG	3 cut(s)	947, 1644, 1889
BsiSI	CCGG	6 cut(s)	287, 418, 432, 515, 1078, 1786
BslFI	GGGAC	2 cut(s)	520, 1587
BslI	CCNNNNNNNGG	9 cut(s)	77, 265, 669, 953, 1089, 1093, 1181, 1354, 1791
BsmAI	GTCTC	3 cut(s)	1024, 1128, 1718
BsmFI	GGGAC	2 cut(s)	520, 1587
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	7 cut(s)	6, 69, 465, 488, 699, 1263, 1630
Bso31I	GGTCTC	2 cut(s)	1128, 1718
BsoBI	CYCGRG	3 cut(s)	947, 1644, 1889
Bsp120I	GGGCCC	1 cut(s)	1628
Bsp1286I	GDGCHC	1 cut(s)	1632
Bsp143I	GATC	7 cut(s)	268, 892, 1009, 1358, 1576, 1804, 1851
Bsp19I	CCATGG	1 cut(s)	1617
BspACI	CCGC	7 cut(s)	58, 71, 253, 510, 740, 1314, 1749
BspANI	GGCC	7 cut(s)	6, 69, 465, 488, 699, 1263, 1630
BspCNI	CTCAG	6 cut(s)	273, 285, 676, 1252, 1745, 1834
BspFNI	CGCG	1 cut(s)	216
BspHI	TCATGA	2 cut(s)	355, 1141
BspLI	GGNNCC	4 cut(s)	508, 894, 1603, 1630
BspPI	GGATC	4 cut(s)	276, 887, 900, 1366
BspQI	GCTCTTC	1 cut(s)	1176
BspTI	CTTAAG	1 cut(s)	794
BspTNI	GGTCTC	2 cut(s)	1128, 1718
BsrBI	CCGCTC	2 cut(s)	255, 512
BsrDI	GCAATG	4 cut(s)	460, 466, 837, 1332
BsrFI	RCCGGY	2 cut(s)	286, 431
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	2 cut(s)	286, 431
BssECI	CCNNGG	6 cut(s)	91, 334, 525, 1265, 1617, 1624
BssMI	GATC	7 cut(s)	268, 892, 1009, 1358, 1576, 1804, 1851
BssNI	GRCGYC	1 cut(s)	660
BssT1I	CCWWGG	2 cut(s)	1617, 1624
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	5 cut(s)	338, 529, 1209, 1465, 1848
Bst6I	CTCTTC	4 cut(s)	199, 843, 1176, 1784
BstACI	GRCGYC	1 cut(s)	660
BstAFI	CTTAAG	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	7 cut(s)	8, 71, 212, 233, 288, 385, 1167
BstDEI	CTNAG	6 cut(s)	260, 272, 684, 1239, 1732, 1821
BstDSI	CCRYGG	4 cut(s)	334, 525, 1265, 1617
BstENI	CCTNNNNNAGG	1 cut(s)	667
BstF5I	GGATG	5 cut(s)	700, 985, 1062, 1275, 1438
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	4 cut(s)	216, 286, 423, 1743
BstKTI	GATC	7 cut(s)	271, 895, 1012, 1361, 1579, 1807, 1854
BstMAI	GTCTC	3 cut(s)	1024, 1128, 1718
BstMBI	GATC	7 cut(s)	268, 892, 1009, 1358, 1576, 1804, 1851
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 241, 876
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	3 cut(s)	564, 1076, 1784
BstSLI	GKGCMC	1 cut(s)	1632
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	46, 989, 1090
BstV2I	GAAGAC	3 cut(s)	68, 354, 1203
BstX2I	RGATCY	2 cut(s)	268, 892
BstYI	RGATCY	2 cut(s)	268, 892
BsuRI	GGCC	7 cut(s)	6, 69, 465, 488, 699, 1263, 1630
BtgI	CCRYGG	4 cut(s)	334, 525, 1265, 1617
BtgZI	GCGATG	1 cut(s)	998
BtrI	CACGTC	1 cut(s)	899
BtsCI	GGATG	5 cut(s)	700, 985, 1062, 1275, 1438
BtsI	GCAGTG	1 cut(s)	1603
BtsIMutI	CAGTG	5 cut(s)	131, 268, 1530, 1563, 1603
Cac8I	GCNNGC	7 cut(s)	8, 71, 212, 233, 288, 385, 1167
CciI	TCATGA	2 cut(s)	355, 1141
CfoI	GCGC	4 cut(s)	216, 286, 423, 1743
Cfr10I	RCCGGY	2 cut(s)	286, 431
CseI	GACGC	3 cut(s)	106, 359, 668
Csp6I	GTAC	3 cut(s)	709, 921, 1299
CspCI	CAANNNNNGTGG	2 cut(s)	377, 412
CviAII	CATG	8 cut(s)	232, 356, 874, 1142, 1618, 1653, 1670, 1746
CviQI	GTAC	3 cut(s)	709, 921, 1299
DdeI	CTNAG	6 cut(s)	260, 272, 684, 1239, 1732, 1821
DpnI	GATC	7 cut(s)	270, 894, 1011, 1360, 1578, 1806, 1853
DpnII	GATC	7 cut(s)	268, 892, 1009, 1358, 1576, 1804, 1851
EaeI	YGGCCR	2 cut(s)	463, 697
Eam1104I	CTCTTC	4 cut(s)	199, 843, 1176, 1784
EarI	CTCTTC	4 cut(s)	199, 843, 1176, 1784
Eco130I	CCWWGG	2 cut(s)	1617, 1624
Eco24I	GRGCYC	1 cut(s)	1632
Eco31I	GGTCTC	2 cut(s)	1128, 1718
Eco47I	GGWCC	5 cut(s)	507, 1080, 1184, 1601, 1621
Eco57I	CTGAAG	5 cut(s)	107, 428, 1242, 1539, 1563
Eco88I	CYCGRG	3 cut(s)	947, 1644, 1889
EcoNI	CCTNNNNNAGG	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	2 cut(s)	1617, 1624
EcoT22I	ATGCAT	2 cut(s)	970, 1658
EcoT38I	GRGCYC	1 cut(s)	1632
ErhI	CCWWGG	2 cut(s)	1617, 1624
FaeI	CATG	8 cut(s)	235, 359, 877, 1145, 1621, 1656, 1673, 1749
FalI	AAGNNNNNCTT	2 cut(s)	1892, 1924
FaqI	GGGAC	2 cut(s)	520, 1587
FatI	CATG	8 cut(s)	231, 355, 873, 1141, 1617, 1652, 1669, 1745
FauI	CCCGC	2 cut(s)	78, 1321
FbaI	TGATCA	2 cut(s)	1576, 1851
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	35, 741, 1003, 1104
FokI	GGATG	5 cut(s)	707, 992, 1049, 1282, 1445
FriOI	GRGCYC	1 cut(s)	1632
Fsp4HI	GCNGC	4 cut(s)	35, 741, 1003, 1104
FspBI	CTAG	3 cut(s)	77, 278, 744
GlaI	GCGC	4 cut(s)	215, 285, 422, 1742
GluI	GCNGC	4 cut(s)	35, 741, 1003, 1104
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	7 cut(s)	6, 69, 465, 488, 699, 1263, 1630
HapII	CCGG	6 cut(s)	287, 418, 432, 515, 1078, 1786
HgaI	GACGC	3 cut(s)	106, 359, 668
HhaI	GCGC	4 cut(s)	216, 286, 423, 1743
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	8 cut(s)	235, 359, 877, 1145, 1621, 1656, 1673, 1749
Hin6I	GCGC	4 cut(s)	214, 284, 421, 1741
HinP1I	GCGC	4 cut(s)	214, 284, 421, 1741
HindIII	AAGCTT	2 cut(s)	911, 1146
HpaII	CCGG	6 cut(s)	287, 418, 432, 515, 1078, 1786
HphI	GGTGA	8 cut(s)	124, 421, 544, 580, 936, 1384, 1488, 1841
Hpy166II	GTNNAC	3 cut(s)	44, 525, 1060
Hpy188III	TCNNGA	9 cut(s)	278, 344, 356, 629, 890, 902, 1142, 1685, 1717
Hpy8I	GTNNAC	3 cut(s)	44, 525, 1060
HpyAV	CCTTC	7 cut(s)	131, 410, 1213, 1266, 1369, 1699, 1894
HpyCH4III	ACNGT	5 cut(s)	338, 529, 1209, 1465, 1848
HpyCH4IV	ACGT	3 cut(s)	372, 898, 1918
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 241, 876
HpyF3I	CTNAG	6 cut(s)	260, 272, 684, 1239, 1732, 1821
HpySE526I	ACGT	3 cut(s)	372, 898, 1918
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	8 cut(s)	235, 359, 877, 1145, 1621, 1656, 1673, 1749
HspAI	GCGC	4 cut(s)	214, 284, 421, 1741
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	2 cut(s)	1576, 1851
Kzo9I	GATC	7 cut(s)	268, 892, 1009, 1358, 1576, 1804, 1851
LguI	GCTCTTC	1 cut(s)	1176
LmnI	GCTCC	5 cut(s)	260, 300, 420, 517, 551
Lsp1109I	GCAGC	3 cut(s)	46, 989, 1090
LweI	GCATC	4 cut(s)	271, 370, 970, 1663
MaeI	CTAG	3 cut(s)	77, 278, 744
MaeII	ACGT	3 cut(s)	372, 898, 1918
MaeIII	GTNAC	5 cut(s)	188, 368, 725, 1546, 1610
MalI	GATC	7 cut(s)	270, 894, 1011, 1360, 1578, 1806, 1853
MbiI	CCGCTC	2 cut(s)	255, 512
MboI	GATC	7 cut(s)	268, 892, 1009, 1358, 1576, 1804, 1851
MfeI	CAATTG	2 cut(s)	17, 436
MflI	RGATCY	2 cut(s)	268, 892
MhlI	GDGCHC	1 cut(s)	1632
MlsI	TGGCCA	2 cut(s)	465, 699
MluNI	TGGCCA	2 cut(s)	465, 699
MlyI	GAGTC	7 cut(s)	49, 185, 602, 959, 1373, 1809, 1901
MmeI	TCCRAC	4 cut(s)	222, 471, 814, 1792
Mox20I	TGGCCA	2 cut(s)	465, 699
Mph1103I	ATGCAT	2 cut(s)	970, 1658
MreI	CGCCGGCG	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	2 cut(s)	314, 327
MscI	TGGCCA	2 cut(s)	465, 699
MseI	TTAA	7 cut(s)	654, 795, 975, 1098, 1118, 1278, 1923
MslI	CAYNNNNRTG	2 cut(s)	530, 963
Msp20I	TGGCCA	2 cut(s)	465, 699
MspCI	CTTAAG	1 cut(s)	794
MspI	CCGG	6 cut(s)	287, 418, 432, 515, 1078, 1786
MspR9I	CCNGG	3 cut(s)	566, 1078, 1786
MunI	CAATTG	2 cut(s)	17, 436
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	102, 241, 876
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	2 cut(s)	1078, 1786
NcoI	CCATGG	1 cut(s)	1617
NdeII	GATC	7 cut(s)	268, 892, 1009, 1358, 1576, 1804, 1851
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	8 cut(s)	235, 359, 877, 1145, 1621, 1656, 1673, 1749
NlaIV	GGNNCC	4 cut(s)	508, 894, 1603, 1630
NmeAIII	GCCGAG	2 cut(s)	63, 72
NmuCI	GTSAC	2 cut(s)	188, 1610
NsiI	ATGCAT	2 cut(s)	970, 1658
NspI	RCATGY	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	530
PaeI	GCATGC	1 cut(s)	235
PagI	TCATGA	2 cut(s)	355, 1141
PciSI	GCTCTTC	1 cut(s)	1176
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PctI	GAATGC	1 cut(s)	931
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	2 cut(s)	314, 327
PfeI	GAWTC	3 cut(s)	49, 295, 1859
PflMI	CCANNNNNTGG	1 cut(s)	1354
PfoI	TCCNGGA	2 cut(s)	1076, 1784
PkrI	GCNGC	4 cut(s)	36, 742, 1004, 1105
PleI	GAGTC	7 cut(s)	48, 185, 601, 958, 1373, 1809, 1900
PpsI	GAGTC	7 cut(s)	48, 185, 601, 958, 1373, 1809, 1900
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	4 cut(s)	508, 894, 1603, 1630
PspOMI	GGGCCC	1 cut(s)	1628
PsrI	GAACNNNNNNTAC	2 cut(s)	1504, 1536
PsuI	RGATCY	2 cut(s)	268, 892
RsaI	GTAC	3 cut(s)	710, 922, 1300
RsaNI	GTAC	3 cut(s)	709, 921, 1299
RseI	CAYNNNNRTG	2 cut(s)	530, 963
SapI	GCTCTTC	1 cut(s)	1176
SaqAI	TTAA	7 cut(s)	654, 795, 975, 1098, 1118, 1278, 1923
SatI	GCNGC	4 cut(s)	35, 741, 1003, 1104
Sau3AI	GATC	7 cut(s)	268, 892, 1009, 1358, 1576, 1804, 1851
SchI	GAGTC	7 cut(s)	49, 185, 602, 959, 1373, 1809, 1901
ScrFI	CCNGG	3 cut(s)	566, 1078, 1786
SduI	GDGCHC	1 cut(s)	1632
SfaNI	GCATC	4 cut(s)	271, 370, 970, 1663
SgrAI	CRCCGGYG	1 cut(s)	286
SinI	GGWCC	5 cut(s)	507, 1080, 1184, 1601, 1621
SmiMI	CAYNNNNRTG	2 cut(s)	530, 963
SmlI	CTYRAG	3 cut(s)	794, 1294, 1715
SmoI	CTYRAG	3 cut(s)	794, 1294, 1715
SphI	GCATGC	1 cut(s)	235
SsiI	CCGC	7 cut(s)	58, 71, 253, 510, 740, 1314, 1749
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	77, 278, 744
StyD4I	CCNGG	3 cut(s)	564, 1076, 1784
StyI	CCWWGG	2 cut(s)	1617, 1624
TaaI	ACNGT	5 cut(s)	338, 529, 1209, 1465, 1848
TaiI	ACGT	3 cut(s)	375, 901, 1921
TaqI	TCGA	1 cut(s)	866
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	3 cut(s)	49, 295, 1859
Tru1I	TTAA	7 cut(s)	654, 795, 975, 1098, 1118, 1278, 1923
Tru9I	TTAA	7 cut(s)	654, 795, 975, 1098, 1118, 1278, 1923
TscAI	CASTG	5 cut(s)	131, 268, 1530, 1563, 1603
TseFI	GTSAC	2 cut(s)	188, 1610
TseI	GCWGC	3 cut(s)	34, 1002, 1103
Tsp45I	GTSAC	2 cut(s)	188, 1610
TspDTI	ATGAA	6 cut(s)	862, 1158, 1286, 1641, 1848, 1900
TspGWI	ACGGA	2 cut(s)	213, 1282
TspRI	CASTG	5 cut(s)	131, 268, 1530, 1563, 1603
Van91I	CCANNNNNTGG	1 cut(s)	1354
Vha464I	CTTAAG	1 cut(s)	794
VpaK11BI	GGWCC	5 cut(s)	507, 1080, 1184, 1601, 1621
XagI	CCTNNNNNAGG	1 cut(s)	667
XapI	RAATTY	1 cut(s)	1197
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	43
XmnI	GAANNNNTTC	2 cut(s)	314, 327
XspI	CTAG	3 cut(s)	77, 278, 744
Zsp2I	ATGCAT	2 cut(s)	970, 1658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.