Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007802.1

Orthogroup ID

OG0005652

Physical Location & Seq

Genomic Coordinates Reverse (-)

143121 .. 143884

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007802.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgggtcgttggtattgctgcaacgatcagtttgtctcgctttcaactttgctggatgtcttatctgaaaaggtttacatccttttcttctcccgtaccaaccaaaggtcggttaatgctgcttcaaatggggtaaagtctcaaaattgtaatggtcatgaagcttccaaaaaaccaaagcctgctcttccaccagaaggaccacaaataaaaatttctgaacagtcttcttggaaggatatttctactaaatctcaggctgataaagtgctgtcaggcccacggatgaagtttaacatcaatggaaactttagcaccaaaagaactcctgcaactgataatggaaaaattgcttacaagaaccaatctgtgggatcaaatggggaggtgaagaacttggttagtttggacaaaagtgagaaagccaagatgtctttgataaatggggatttgaaatccgaactctctgaagggactggttcagtgaaaaccgaactccctgatcactctgaattggatggcagtggtctccatggccacgccgtggtccttgggcccaaaaggaaatcttggggttcatgcattttgtttgaacgtgatgctcagtctctggaaaaagttgaagaattgaaggaagggtatgttatactcttctaccttcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

221

Amino Acids

24.33

Weight (kDa)

9.06

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14400
fragaria_vesca	FvH4_3g16490 FvH4_3g16490 FvH4_3g16490 FvH4_3g16490
malus_domestica	MD05G1209600.v1.1 MD10G1195900.v1.1
prunus_persica	Prupe.4G147900_v2.0.a1
pyrus_communis	pycom05g19560 pycom10g16950
rosa_chinensis	RchiOBHm_Chr5g0027541
rosa_laevigata	RLG00000033025
rosa_multiflora	Rmu_co8326735.1_g000001 Rmu_co8467017.1_g000001 Rmu_sc0004493.1_g000008 Rmu_sc0007802.1_g000039 Rmu_sc0011056.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052000 Rroxscaffold_1G00052020
rosa_rugosa	Rorug05G0099400 Rorug05G0099500 Rorug05G0099600
rosa_samantha	Rh5AG193700 Rh5BG191700 Rh5CG211900 Rh5DG193400 Rh5DG193600
rosa_wichuraiana	Rw5G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	370, 544
AclWI	GGATC	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	489
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	5 cut(s)	105, 109, 197, 370, 544
AgsI	TTSAA	6 cut(s)	45, 126, 454, 593, 623, 631
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	4 cut(s)	40, 144, 533, 612
AlwI	GGATC	1 cut(s)	382
AlwNI	CAGNNNCTG	1 cut(s)	610
AoxI	GGCC	3 cut(s)	277, 535, 554
ApaI	GGGCCC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	18, 119
ApoI	RAATTY	1 cut(s)	213
AspS9I	GGNCC	5 cut(s)	200, 278, 547, 554, 555
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	2 cut(s)	200, 547
BaeGI	GKGCMC	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	5, 106
BccI	CCATC	1 cut(s)	512
BceAI	ACGGC	1 cut(s)	527
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	4 cut(s)	40, 144, 533, 612
BisI	GCNGC	2 cut(s)	19, 120
BlsI	GCNGC	2 cut(s)	20, 121
Bme18I	GGWCC	2 cut(s)	200, 547
BmgT120I	GGNCC	5 cut(s)	200, 278, 547, 554, 555
BmiI	GGNNCC	1 cut(s)	556
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	4 cut(s)	281, 532, 543, 550
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 109, 197, 370, 544
Bse1I	ACTGG	1 cut(s)	481
BseDI	CCNNGG	4 cut(s)	281, 532, 543, 550
BseGI	GGATG	4 cut(s)	61, 78, 291, 523
BseLI	CCNNNNNNNGG	5 cut(s)	105, 109, 197, 370, 544
BseMII	CTCAG	2 cut(s)	269, 617
BseNI	ACTGG	1 cut(s)	481
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	2 cut(s)	5, 106
BshFI	GGCC	3 cut(s)	279, 537, 556
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	5 cut(s)	105, 109, 197, 370, 544
BsmAI	GTCTC	4 cut(s)	40, 144, 533, 612
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	3 cut(s)	279, 537, 556
Bso31I	GGTCTC	1 cut(s)	533
Bsp120I	GGGCCC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	25, 374, 502
Bsp19I	CCATGG	1 cut(s)	532
BspANI	GGCC	3 cut(s)	279, 537, 556
BspCNI	CTCAG	2 cut(s)	268, 616
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	4 cut(s)	281, 532, 543, 550
BssMI	GATC	3 cut(s)	25, 374, 502
BssT1I	CCWWGG	2 cut(s)	532, 550
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	2 cut(s)	192, 656
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	255, 603
BstDSI	CCRYGG	3 cut(s)	281, 532, 543
BstF5I	GGATG	4 cut(s)	61, 78, 291, 523
BstKTI	GATC	3 cut(s)	28, 377, 505
BstMAI	GTCTC	4 cut(s)	40, 144, 533, 612
BstMBI	GATC	3 cut(s)	25, 374, 502
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	5, 106
BstV2I	GAAGAC	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	279, 537, 556
BtgI	CCRYGG	3 cut(s)	281, 532, 543
BtsCI	GGATG	4 cut(s)	61, 78, 291, 523
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	2 cut(s)	489, 529
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	610
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	5 cut(s)	200, 278, 547, 554, 555
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	158, 533, 579
CviJI	RGCY	7 cut(s)	164, 181, 260, 279, 425, 537, 556
CviKI_1	RGCY	7 cut(s)	164, 181, 260, 279, 425, 537, 556
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	255, 603
DpnI	GATC	3 cut(s)	27, 376, 504
DpnII	GATC	3 cut(s)	25, 374, 502
DraIII	CACNNNGTG	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	192, 656
EarI	CTCTTC	2 cut(s)	192, 656
Eco130I	CCWWGG	2 cut(s)	532, 550
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	2 cut(s)	200, 547
Eco57I	CTGAAG	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	532, 550
EcoT22I	ATGCAT	1 cut(s)	584
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	2 cut(s)	532, 550
FaeI	CATG	3 cut(s)	161, 536, 582
FaiI	YATR	5 cut(s)	159, 534, 580, 642, 647
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	3 cut(s)	157, 532, 578
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	19, 120
FokI	GGATG	4 cut(s)	65, 68, 298, 530
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	2 cut(s)	19, 120
GluI	GCNGC	2 cut(s)	19, 120
HaeIII	GGCC	3 cut(s)	279, 537, 556
Hin1II	CATG	3 cut(s)	161, 536, 582
HindIII	AAGCTT	1 cut(s)	162
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	5 cut(s)	67, 220, 460, 469, 511
Hpy188III	TCNNGA	2 cut(s)	158, 611
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	5 cut(s)	191, 229, 464, 625, 629
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	3 cut(s)	21, 332, 582
HpyF3I	CTNAG	2 cut(s)	255, 603
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	3 cut(s)	161, 536, 582
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	25, 374, 502
LguI	GCTCTTC	1 cut(s)	192
LpnPI	CCDG	9 cut(s)	38, 195, 207, 242, 261, 342, 462, 513, 596
Lsp1109I	GCAGC	2 cut(s)	5, 106
LweI	GCATC	1 cut(s)	589
MaeII	ACGT	1 cut(s)	595
MalI	GATC	3 cut(s)	27, 376, 504
MboI	GATC	3 cut(s)	25, 374, 502
MboII	GAAGA	6 cut(s)	79, 179, 219, 403, 635, 643
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	5 cut(s)	145, 213, 348, 512, 626
MluNI	TGGCCA	1 cut(s)	537
MnlI	CCTC	1 cut(s)	379
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	2 cut(s)	114, 294
Msp20I	TGGCCA	1 cut(s)	537
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	3 cut(s)	25, 374, 502
NlaIII	CATG	3 cut(s)	161, 536, 582
NlaIV	GGNNCC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	584
PagI	TCATGA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	192
PflMI	CCANNNNNTGG	2 cut(s)	370, 544
PkrI	GCNGC	2 cut(s)	20, 121
PspN4I	GGNNCC	1 cut(s)	556
PspOMI	GGGCCC	1 cut(s)	554
PspPI	GGNCC	5 cut(s)	200, 278, 547, 554, 555
PstNI	CAGNNNCTG	1 cut(s)	610
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	114, 294
SatI	GCNGC	2 cut(s)	19, 120
Sau3AI	GATC	3 cut(s)	25, 374, 502
Sau96I	GGNCC	5 cut(s)	200, 278, 547, 554, 555
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	6 cut(s)	75, 110, 166, 390, 598, 660
SfaNI	GCATC	1 cut(s)	589
SinI	GGWCC	2 cut(s)	200, 547
Sse9I	AATT	5 cut(s)	145, 213, 348, 512, 626
StyI	CCWWGG	2 cut(s)	532, 550
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	598
TasI	AATT	5 cut(s)	145, 213, 348, 512, 626
Tru1I	TTAA	2 cut(s)	114, 294
Tru9I	TTAA	2 cut(s)	114, 294
TscAI	CASTG	2 cut(s)	489, 529
TseI	GCWGC	2 cut(s)	18, 119
TspDTI	ATGAA	3 cut(s)	174, 302, 567
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	489, 529
Van91I	CCANNNNNTGG	2 cut(s)	370, 544
VpaK11BI	GGWCC	2 cut(s)	200, 547
XapI	RAATTY	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.